Wall clock time and date at job start Mon Mar 30 2020 01:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 C 1.34511 * 125.78855 * 240.00348 * 4 2 1 6 6 C 1.41385 * 106.84127 * 179.97438 * 5 4 2 7 7 C 1.34510 * 106.83883 * 359.97438 * 6 5 4 8 8 C 1.50703 * 125.78843 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.47194 * 89.99527 * 8 7 6 10 10 H 1.08003 * 119.99719 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99663 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00025 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99630 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46725 * 90.00084 * 13 11 9 15 15 H 1.48495 * 109.46998 * 209.99803 * 13 11 9 16 16 H 1.48495 * 109.47159 * 330.00251 * 13 11 9 17 17 O 1.34297 * 125.78844 * 59.68629 * 4 2 1 18 18 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 19 19 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 21 21 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 22 22 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 23 23 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 25 25 H 1.08005 * 126.57893 * 359.95173 * 5 4 2 26 26 H 1.07993 * 126.57854 * 179.97438 * 6 5 4 27 27 H 1.09001 * 109.46858 * 209.99532 * 8 7 6 28 28 H 1.09002 * 109.46941 * 329.99371 * 8 7 6 29 29 H 0.97003 * 119.99365 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 6 2.8089 -1.8086 -1.2429 6 6 3.0378 -2.1331 -2.5999 7 6 2.3870 -1.2141 -3.3355 8 6 2.3459 -1.1583 -4.8409 9 6 1.1723 -1.9602 -5.3415 10 1 0.5210 -2.4600 -4.6397 11 6 0.9294 -2.0550 -6.6955 12 7 1.7222 -1.4460 -7.5500 13 14 -0.5249 -3.0497 -7.3160 14 1 -1.7185 -2.1719 -7.4154 15 1 -0.2078 -3.6074 -8.6552 16 1 -0.8045 -4.1603 -6.3708 17 8 1.7758 -0.3576 -2.5007 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 -0.8900 21 1 1.8934 -0.5138 0.8899 22 1 1.6767 1.9563 0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 3.1856 -2.3403 -0.3816 26 1 3.6229 -2.9602 -2.9739 27 1 2.2420 -0.1222 -5.1633 28 1 3.2689 -1.5738 -5.2452 29 1 1.5515 -1.5131 -8.5025 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261244624.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:07 Heat of formation + Delta-G solvation = -31.445876 kcal Electronic energy + Delta-G solvation = -11833.484416 eV Core-core repulsion = 9721.675720 eV Total energy + Delta-G solvation = -2111.808696 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.39117 -36.54693 -35.45706 -33.78607 -32.01928 -28.22813 -28.03310 -25.29477 -22.58860 -22.40228 -20.62971 -18.68743 -17.40164 -16.78746 -16.46314 -15.66873 -15.24911 -14.43046 -14.13351 -14.05503 -13.92137 -13.59764 -13.29814 -13.03215 -12.73357 -12.55510 -12.11823 -12.06862 -11.97784 -11.73303 -11.66847 -10.68859 -10.66701 -9.05476 -8.26541 -6.42935 0.97130 1.38516 1.40025 1.51826 1.82986 2.19225 2.38953 3.03595 3.73057 4.01543 4.21879 4.26011 4.32710 4.51412 4.77868 4.86663 4.90751 4.94762 4.98946 5.10465 5.13367 5.24920 5.34812 5.41041 5.47859 5.62523 5.80850 6.02819 6.48701 6.65247 7.25909 8.81660 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.050821 B = 0.008570 C = 0.008175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.816560 B = 3266.302556 C = 3424.115368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.008 4.008 3 C -0.145 4.145 4 C -0.039 4.039 5 C -0.212 4.212 6 C -0.243 4.243 7 C 0.006 3.994 8 C 0.095 3.905 9 C -0.541 4.541 10 H 0.052 0.948 11 C 0.010 3.990 12 N -0.926 5.926 13 Si 0.972 3.028 14 H -0.270 1.270 15 H -0.273 1.273 16 H -0.266 1.266 17 O -0.195 6.195 18 H 0.093 0.907 19 H 0.052 0.948 20 H 0.038 0.962 21 H 0.125 0.875 22 H 0.092 0.908 23 H 0.057 0.943 24 H 0.038 0.962 25 H 0.174 0.826 26 H 0.146 0.854 27 H 0.009 0.991 28 H 0.037 0.963 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.800 1.775 14.547 14.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 C -0.202 4.202 4 C -0.088 4.088 5 C -0.230 4.230 6 C -0.262 4.262 7 C -0.044 4.044 8 C 0.058 3.942 9 C -0.578 4.578 10 H 0.070 0.930 11 C -0.189 4.189 12 N -0.565 5.565 13 Si 0.796 3.204 14 H -0.196 1.196 15 H -0.198 1.198 16 H -0.191 1.191 17 O -0.092 6.092 18 H 0.112 0.888 19 H 0.071 0.929 20 H 0.057 0.943 21 H 0.143 0.857 22 H 0.111 0.889 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.191 0.809 26 H 0.163 0.837 27 H 0.027 0.973 28 H 0.055 0.945 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.938 2.055 14.278 14.456 hybrid contribution -0.310 -0.598 -0.926 1.145 sum -1.248 1.457 13.352 13.489 Atomic orbital electron populations 1.21863 0.93644 1.02203 1.02680 1.19934 0.96497 0.96252 0.89953 1.21854 1.01335 0.94322 1.02704 1.23175 1.02531 0.98928 0.84176 1.21792 1.04600 0.99362 0.97277 1.21669 1.07903 1.02843 0.93803 1.23245 0.96105 0.91350 0.93748 1.17672 0.97878 0.97053 0.81615 1.21286 1.11988 1.32171 0.92393 0.92960 1.25924 0.99758 0.96623 0.96607 1.70057 1.39441 1.44071 1.02933 0.85337 0.78545 0.78731 0.77802 1.19580 1.19826 1.19059 1.83930 1.59880 1.48766 1.16671 0.88808 0.92868 0.94322 0.85725 0.88925 0.92417 0.94228 0.80902 0.83651 0.97258 0.94484 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.18 71.98 0.66 -2.80 15 2 C -0.01 -0.20 3.32 -11.54 -0.04 -0.24 15 3 C -0.14 -3.22 9.17 71.98 0.66 -2.56 15 4 C -0.04 -1.39 5.83 24.83 0.14 -1.25 15 5 C -0.21 -7.49 10.78 22.19 0.24 -7.25 15 6 C -0.24 -10.46 10.81 22.19 0.24 -10.22 15 7 C 0.01 0.27 6.51 24.83 0.16 0.44 15 8 C 0.09 5.35 5.51 29.10 0.16 5.51 15 9 C -0.54 -32.14 9.09 25.60 0.23 -31.90 15 10 H 0.05 3.10 7.74 -2.91 -0.02 3.08 15 11 C 0.01 0.57 5.46 84.66 0.46 1.03 15 12 N -0.93 -55.88 13.29 21.45 0.28 -55.60 15 13 Si 0.97 44.70 29.54 68.60 2.03 46.73 15 14 H -0.27 -12.02 7.11 99.48 0.71 -11.32 15 15 H -0.27 -11.99 7.11 99.48 0.71 -11.29 15 16 H -0.27 -11.88 7.11 99.48 0.71 -11.18 15 17 O -0.19 -8.99 10.65 -2.48 -0.03 -9.01 15 18 H 0.09 1.55 8.14 -2.39 -0.02 1.53 15 19 H 0.05 1.30 8.14 -2.39 -0.02 1.28 15 20 H 0.04 1.08 8.14 -2.38 -0.02 1.06 15 21 H 0.12 2.28 8.10 -2.39 -0.02 2.26 15 22 H 0.09 1.44 8.14 -2.39 -0.02 1.42 15 23 H 0.06 1.27 8.14 -2.39 -0.02 1.25 15 24 H 0.04 1.04 8.14 -2.39 -0.02 1.02 15 25 H 0.17 4.64 8.06 -2.91 -0.02 4.61 15 26 H 0.15 5.87 8.06 -2.91 -0.02 5.85 15 27 H 0.01 0.55 8.14 -2.39 -0.02 0.53 15 28 H 0.04 2.14 8.14 -2.39 -0.02 2.12 15 29 H 0.27 15.12 8.31 -92.71 -0.77 14.35 15 Total: -1.00 -66.84 255.86 6.31 -60.53 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 1.11 Total: 6.59 kcal Atomic # 6 Polarization: -52.17 SS G_CDS: 2.92 Total: -49.24 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.28 Total: -55.60 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.03 Total: -9.01 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -66.84 6.31 -60.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244624.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.083 kcal (2) G-P(sol) polarization free energy of solvation -66.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds