Wall clock time and date at job start Mon Mar 30 2020 01:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47547 * 2 1 4 4 C 1.50700 * 109.47480 * 120.00153 * 2 1 3 5 5 C 1.41379 * 126.57777 * 300.04798 * 4 2 1 6 6 C 1.34515 * 106.84199 * 179.97438 * 5 4 2 7 7 O 1.34304 * 108.41686 * 359.73115 * 6 5 4 8 8 C 1.34304 * 109.47542 * 0.43944 * 7 6 5 9 9 C 1.50700 * 125.78579 * 179.82892 * 8 7 6 10 10 C 1.50702 * 109.46869 * 269.68837 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48496 * 109.47341 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46983 * 120.00379 * 14 12 10 17 17 H 1.48503 * 109.47491 * 240.00192 * 14 12 10 18 18 H 1.08998 * 109.46770 * 300.00246 * 1 2 3 19 19 H 1.09003 * 109.46969 * 59.99891 * 1 2 3 20 20 H 1.08991 * 109.47522 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.46810 * 240.00409 * 2 1 3 22 22 H 1.08998 * 109.47684 * 180.02562 * 3 2 1 23 23 H 1.09000 * 109.46962 * 300.00573 * 3 2 1 24 24 H 1.08999 * 109.46642 * 59.99680 * 3 2 1 25 25 H 1.08007 * 126.57859 * 359.96951 * 5 4 2 26 26 H 1.07999 * 125.79230 * 180.02562 * 6 5 4 27 27 H 1.09004 * 109.47210 * 149.69130 * 9 8 7 28 28 H 1.08994 * 109.47551 * 29.68783 * 9 8 7 29 29 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.7773 -0.3513 2.5738 6 6 2.4134 -1.2511 3.3453 7 8 3.0318 -2.1346 2.5448 8 6 2.8090 -1.8082 1.2612 9 6 3.3345 -2.5501 0.0593 10 6 4.6696 -1.9767 -0.3405 11 1 5.0952 -1.1574 0.2199 12 6 5.3508 -2.5023 -1.4181 13 7 4.8327 -3.5002 -2.1002 14 14 7.0092 -1.7966 -1.9090 15 1 7.3680 -0.6886 -0.9878 16 1 8.0427 -2.8601 -1.8296 17 1 6.9357 -1.2807 -3.2995 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8933 -0.5138 -0.8901 22 1 3.1301 1.4425 -0.0005 23 1 1.6767 1.9564 -0.8899 24 1 1.6767 1.9563 0.8900 25 1 1.1854 0.4851 2.9152 26 1 2.4212 -1.2639 4.4252 27 1 2.6320 -2.4460 -0.7677 28 1 3.4515 -3.6052 0.3061 29 1 5.3117 -3.8697 -2.8585 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261271593.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:10 Heat of formation + Delta-G solvation = -13.923275 kcal Electronic energy + Delta-G solvation = -12123.118456 eV Core-core repulsion = 10012.069597 eV Total energy + Delta-G solvation = -2111.048859 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.73000 -35.54738 -33.32222 -30.95563 -30.41002 -26.63900 -26.49897 -23.10078 -22.07457 -20.01297 -18.50382 -16.50049 -16.08252 -14.95505 -14.60977 -14.29454 -13.45700 -12.97572 -12.65297 -12.35703 -12.03389 -11.94878 -11.78538 -11.21702 -10.82773 -10.70780 -10.69411 -10.42320 -10.13051 -9.79264 -9.49208 -8.87312 -8.48335 -7.38253 -6.09326 -4.13816 2.65306 3.28035 3.34831 3.38630 3.45238 3.96336 4.42034 5.25783 5.38428 5.44053 5.70174 5.77776 5.85473 6.05176 6.14904 6.21647 6.25130 6.40251 6.54103 6.69573 6.80987 6.99799 7.08894 7.21693 7.37295 7.52773 7.85723 8.18336 8.20404 8.89356 9.49992 11.00003 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.035727 B = 0.011635 C = 0.010383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.533735 B = 2405.875622 C = 2696.074115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.022 4.022 3 C -0.135 4.135 4 C -0.208 4.208 5 C -0.200 4.200 6 C -0.085 4.085 7 O -0.179 6.179 8 C 0.053 3.947 9 C 0.087 3.913 10 C -0.513 4.513 11 H 0.059 0.941 12 C 0.060 3.940 13 N -0.893 5.893 14 Si 0.898 3.102 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 H 0.047 0.953 19 H 0.049 0.951 20 H 0.051 0.949 21 H 0.085 0.915 22 H 0.057 0.943 23 H 0.048 0.952 24 H 0.045 0.955 25 H 0.132 0.868 26 H 0.187 0.813 27 H 0.053 0.947 28 H 0.035 0.965 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.961 6.151 5.167 10.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.040 4.040 3 C -0.193 4.193 4 C -0.209 4.209 5 C -0.220 4.220 6 C -0.152 4.152 7 O -0.076 6.076 8 C 0.002 3.998 9 C 0.050 3.950 10 C -0.551 4.551 11 H 0.078 0.922 12 C -0.142 4.142 13 N -0.532 5.532 14 Si 0.726 3.274 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 H 0.066 0.934 19 H 0.068 0.932 20 H 0.070 0.930 21 H 0.104 0.896 22 H 0.076 0.924 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.150 0.850 26 H 0.204 0.796 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.759 5.794 5.114 9.638 hybrid contribution 0.785 0.543 -0.119 0.962 sum -4.974 6.337 4.995 9.479 Atomic orbital electron populations 1.21787 0.95807 1.01295 1.00560 1.19405 0.94128 0.95109 0.95376 1.21739 1.01591 0.95680 1.00246 1.19913 1.06645 0.99801 0.94554 1.21459 1.05312 1.01968 0.93234 1.23626 1.02000 0.93494 0.96088 1.84056 1.59574 1.46892 1.17048 1.23600 0.96220 0.96711 0.83254 1.18011 0.96487 0.95029 0.85475 1.21030 1.02792 1.17772 1.13493 0.92227 1.24979 0.98173 0.94904 0.96119 1.69957 1.38670 1.24737 1.19842 0.86424 0.83520 0.79081 0.78406 1.19629 1.20850 1.20805 0.93388 0.93217 0.92981 0.89642 0.92406 0.93331 0.93589 0.84969 0.79567 0.92939 0.94671 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.10 37.16 0.34 -1.77 15 2 C -0.02 -0.40 3.23 -91.77 -0.30 -0.70 15 3 C -0.14 -2.22 9.10 37.16 0.34 -1.89 15 4 C -0.21 -4.27 4.83 -104.75 -0.51 -4.78 15 5 C -0.20 -3.60 10.46 -39.70 -0.42 -4.01 15 6 C -0.09 -1.52 12.09 29.42 0.36 -1.16 15 7 O -0.18 -3.98 10.65 5.70 0.06 -3.92 15 8 C 0.05 1.24 6.51 -35.63 -0.23 1.01 15 9 C 0.09 2.27 5.16 -29.03 -0.15 2.12 15 10 C -0.51 -14.46 9.09 -34.44 -0.31 -14.77 15 11 H 0.06 1.70 7.74 -52.49 -0.41 1.29 15 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 13 N -0.89 -26.07 13.29 55.43 0.74 -25.33 15 14 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 15 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 18 H 0.05 0.68 8.05 -51.93 -0.42 0.26 15 19 H 0.05 0.67 8.14 -51.93 -0.42 0.25 15 20 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 21 H 0.09 1.76 6.80 -51.93 -0.35 1.41 15 22 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.05 0.70 8.14 -51.93 -0.42 0.27 15 24 H 0.04 0.69 8.06 -51.93 -0.42 0.27 15 25 H 0.13 2.00 8.06 -52.48 -0.42 1.57 15 26 H 0.19 2.46 8.06 -52.49 -0.42 2.03 15 27 H 0.05 1.40 7.13 -51.93 -0.37 1.03 15 28 H 0.04 0.97 8.14 -51.93 -0.42 0.55 15 29 H 0.26 7.22 8.31 -40.82 -0.34 6.88 15 LS Contribution 252.74 15.07 3.81 3.81 Total: -1.00 -29.61 252.74 -5.45 -35.06 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -4.06 Total: -1.75 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: -0.98 Total: -24.36 kcal Atomic # 7 Polarization: -26.07 SS G_CDS: 0.74 Total: -25.33 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: 0.06 Total: -3.92 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.61 -5.45 -35.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261271593.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.137 kcal (2) G-P(sol) polarization free energy of solvation -29.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds