Wall clock time and date at job start Mon Mar 30 2020 01:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47547 * 2 1 4 4 C 1.50700 * 109.47480 * 120.00153 * 2 1 3 5 5 C 1.41379 * 126.57777 * 300.04798 * 4 2 1 6 6 C 1.34515 * 106.84199 * 179.97438 * 5 4 2 7 7 O 1.34304 * 108.41686 * 359.73115 * 6 5 4 8 8 C 1.34304 * 109.47542 * 0.43944 * 7 6 5 9 9 C 1.50700 * 125.78579 * 179.82892 * 8 7 6 10 10 C 1.50702 * 109.46869 * 269.68837 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48496 * 109.47341 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46983 * 120.00379 * 14 12 10 17 17 H 1.48503 * 109.47491 * 240.00192 * 14 12 10 18 18 H 1.08998 * 109.46770 * 300.00246 * 1 2 3 19 19 H 1.09003 * 109.46969 * 59.99891 * 1 2 3 20 20 H 1.08991 * 109.47522 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.46810 * 240.00409 * 2 1 3 22 22 H 1.08998 * 109.47684 * 180.02562 * 3 2 1 23 23 H 1.09000 * 109.46962 * 300.00573 * 3 2 1 24 24 H 1.08999 * 109.46642 * 59.99680 * 3 2 1 25 25 H 1.08007 * 126.57859 * 359.96951 * 5 4 2 26 26 H 1.07999 * 125.79230 * 180.02562 * 6 5 4 27 27 H 1.09004 * 109.47210 * 149.69130 * 9 8 7 28 28 H 1.08994 * 109.47551 * 29.68783 * 9 8 7 29 29 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.7773 -0.3513 2.5738 6 6 2.4134 -1.2511 3.3453 7 8 3.0318 -2.1346 2.5448 8 6 2.8090 -1.8082 1.2612 9 6 3.3345 -2.5501 0.0593 10 6 4.6696 -1.9767 -0.3405 11 1 5.0952 -1.1574 0.2199 12 6 5.3508 -2.5023 -1.4181 13 7 4.8327 -3.5002 -2.1002 14 14 7.0092 -1.7966 -1.9090 15 1 7.3680 -0.6886 -0.9878 16 1 8.0427 -2.8601 -1.8296 17 1 6.9357 -1.2807 -3.2995 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8933 -0.5138 -0.8901 22 1 3.1301 1.4425 -0.0005 23 1 1.6767 1.9564 -0.8899 24 1 1.6767 1.9563 0.8900 25 1 1.1854 0.4851 2.9152 26 1 2.4212 -1.2639 4.4252 27 1 2.6320 -2.4460 -0.7677 28 1 3.4515 -3.6052 0.3061 29 1 5.3117 -3.8697 -2.8585 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261271593.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:10 Heat of formation + Delta-G solvation = -30.969775 kcal Electronic energy + Delta-G solvation = -12123.857648 eV Core-core repulsion = 10012.069597 eV Total energy + Delta-G solvation = -2111.788051 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.32045 -37.03328 -35.41884 -32.43642 -32.33873 -28.35426 -27.89865 -25.10989 -23.56108 -21.56122 -20.06763 -18.64492 -17.66668 -16.67263 -16.49845 -15.83673 -14.95811 -14.46179 -14.33742 -13.99707 -13.92249 -13.50392 -13.06217 -12.96766 -12.74686 -12.50360 -12.06836 -12.04685 -11.78256 -11.62417 -11.44082 -10.66134 -10.35168 -9.04104 -8.23916 -6.39344 1.07265 1.38411 1.38910 1.52571 1.88544 2.36032 2.45255 3.06132 3.96681 4.06858 4.23501 4.43479 4.50925 4.66682 4.77823 4.87144 4.98186 5.02455 5.12084 5.18422 5.22030 5.37268 5.49048 5.49739 5.59916 5.65796 5.90506 6.07409 6.54769 6.68924 7.28972 8.84173 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.035727 B = 0.011635 C = 0.010383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.533735 B = 2405.875622 C = 2696.074115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.030 4.030 3 C -0.129 4.129 4 C -0.194 4.194 5 C -0.206 4.206 6 C -0.070 4.070 7 O -0.204 6.204 8 C -0.006 4.006 9 C 0.099 3.901 10 C -0.531 4.531 11 H 0.050 0.950 12 C 0.009 3.991 13 N -0.926 5.926 14 Si 0.968 3.032 15 H -0.268 1.268 16 H -0.274 1.274 17 H -0.271 1.271 18 H 0.068 0.932 19 H 0.069 0.931 20 H 0.040 0.960 21 H 0.049 0.951 22 H 0.032 0.968 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.171 0.829 26 H 0.237 0.763 27 H 0.034 0.966 28 H 0.004 0.996 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.367 8.212 6.279 12.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.049 4.049 3 C -0.186 4.186 4 C -0.195 4.195 5 C -0.224 4.224 6 C -0.135 4.135 7 O -0.102 6.102 8 C -0.056 4.056 9 C 0.062 3.938 10 C -0.569 4.569 11 H 0.069 0.931 12 C -0.189 4.189 13 N -0.566 5.566 14 Si 0.792 3.208 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.196 1.196 18 H 0.087 0.913 19 H 0.088 0.912 20 H 0.059 0.941 21 H 0.067 0.933 22 H 0.052 0.948 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.188 0.812 26 H 0.254 0.746 27 H 0.052 0.948 28 H 0.022 0.978 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.176 7.856 6.225 11.774 hybrid contribution 0.842 -0.091 -0.382 0.929 sum -5.334 7.765 5.843 11.086 Atomic orbital electron populations 1.21715 0.92981 1.01290 1.02622 1.19523 0.96501 0.95828 0.93060 1.21687 1.00004 0.94457 1.02468 1.20342 1.04240 0.98115 0.96794 1.21825 1.05916 1.03227 0.91463 1.24710 0.99389 0.91597 0.97848 1.84000 1.60752 1.48541 1.16900 1.23085 1.00193 0.99071 0.83253 1.17586 0.95733 0.93568 0.86915 1.21260 1.03902 1.17794 1.13900 0.93137 1.25886 1.02089 0.95100 0.95854 1.70065 1.40373 1.25818 1.20320 0.85349 0.78590 0.78482 0.78369 1.19214 1.19968 1.19596 0.91277 0.91169 0.94070 0.93276 0.94836 0.91177 0.91299 0.81159 0.74644 0.94765 0.97820 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 9.10 71.98 0.65 -3.02 15 2 C -0.03 -1.11 3.23 -11.54 -0.04 -1.14 15 3 C -0.13 -3.99 9.10 71.98 0.65 -3.34 15 4 C -0.19 -7.87 4.83 -19.95 -0.10 -7.96 15 5 C -0.21 -6.74 10.46 22.19 0.23 -6.51 15 6 C -0.07 -2.29 12.09 66.97 0.81 -1.48 15 7 O -0.20 -9.12 10.65 -2.51 -0.03 -9.15 15 8 C -0.01 -0.31 6.51 24.83 0.16 -0.14 15 9 C 0.10 5.53 5.16 29.10 0.15 5.68 15 10 C -0.53 -31.23 9.09 25.60 0.23 -31.00 15 11 H 0.05 2.98 7.74 -2.91 -0.02 2.96 15 12 C 0.01 0.55 5.46 84.66 0.46 1.01 15 13 N -0.93 -55.77 13.29 21.45 0.28 -55.48 15 14 Si 0.97 44.69 29.54 68.60 2.03 46.72 15 15 H -0.27 -12.08 7.11 99.48 0.71 -11.38 15 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 18 H 0.07 1.68 8.05 -2.39 -0.02 1.67 15 19 H 0.07 1.71 8.14 -2.39 -0.02 1.69 15 20 H 0.04 1.24 8.14 -2.39 -0.02 1.22 15 21 H 0.05 2.11 6.80 -2.38 -0.02 2.10 15 22 H 0.03 1.17 8.14 -2.39 -0.02 1.15 15 23 H 0.07 1.85 8.14 -2.39 -0.02 1.83 15 24 H 0.07 1.81 8.06 -2.39 -0.02 1.79 15 25 H 0.17 4.24 8.06 -2.91 -0.02 4.22 15 26 H 0.24 5.08 8.06 -2.91 -0.02 5.05 15 27 H 0.03 1.98 7.13 -2.38 -0.02 1.96 15 28 H 0.00 0.21 8.14 -2.39 -0.02 0.19 15 29 H 0.27 15.02 8.31 -92.70 -0.77 14.25 15 Total: -1.00 -66.51 252.74 6.62 -59.89 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: 1.11 Total: 5.93 kcal Atomic # 6 Polarization: -51.14 SS G_CDS: 3.22 Total: -47.91 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.28 Total: -55.48 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.03 Total: -9.15 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -66.51 6.62 -59.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261271593.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.922 kcal (2) G-P(sol) polarization free energy of solvation -66.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds