Wall clock time and date at job start Mon Mar 30 2020 02:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.30843 * 125.89540 * 299.68905 * 4 2 1 6 6 N 1.40081 * 108.20026 * 179.84986 * 5 4 2 7 7 H 0.97004 * 126.03191 * 180.16704 * 6 5 4 8 8 C 1.34942 * 107.92859 * 0.42166 * 6 5 4 9 9 C 1.35314 * 107.74848 * 359.74593 * 8 6 5 10 10 C 1.50700 * 126.04290 * 179.97438 * 9 8 6 11 11 C 1.50704 * 109.47241 * 265.03049 * 10 9 8 12 12 H 1.08001 * 119.99915 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99986 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99998 * 0.02562 * 13 11 10 15 15 Si 1.86792 * 120.00084 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47517 * 59.99770 * 15 13 11 17 17 H 1.48502 * 109.47215 * 180.02562 * 15 13 11 18 18 H 1.48512 * 109.47175 * 300.00013 * 15 13 11 19 19 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 23 23 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 24 24 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 26 26 H 1.08003 * 126.12767 * 179.72114 * 8 6 5 27 27 H 1.08996 * 109.46967 * 25.03055 * 10 9 8 28 28 H 1.08994 * 109.47133 * 145.02996 * 10 9 8 29 29 H 0.96998 * 119.99941 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7931 -0.3623 2.4688 6 7 2.4340 -1.2786 3.3126 7 1 2.4242 -1.2647 4.2825 8 6 3.0720 -2.1807 2.5379 9 6 2.8398 -1.8525 1.2459 10 6 3.3599 -2.5871 0.0372 11 6 4.6316 -1.9335 -0.4391 12 1 5.0237 -1.0721 0.0812 13 6 5.2944 -2.4353 -1.5390 14 7 4.8167 -3.4839 -2.1729 15 14 6.8710 -1.6257 -2.1289 16 1 7.8864 -1.6719 -1.0464 17 1 7.3835 -2.3495 -3.3201 18 1 6.5964 -0.2115 -2.4899 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.6768 1.9562 0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 3.6625 -3.0151 2.8867 27 1 3.5618 -3.6249 0.3019 28 1 2.6144 -2.5531 -0.7572 29 1 5.2828 -3.8367 -2.9469 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279168.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:01 Heat of formation + Delta-G solvation = 47.476311 kcal Electronic energy + Delta-G solvation = -12089.487448 eV Core-core repulsion = 10013.393825 eV Total energy + Delta-G solvation = -2076.093622 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.45709 -34.99034 -33.25540 -30.74088 -29.66475 -26.64311 -26.52766 -22.89458 -22.57782 -19.44897 -18.25710 -16.90599 -16.13948 -14.42824 -14.16952 -13.95825 -13.90994 -12.65723 -12.46766 -12.31523 -11.90249 -11.71547 -11.31241 -10.87632 -10.75840 -10.68590 -10.60287 -10.17400 -9.93318 -9.47637 -9.29178 -8.62712 -8.32668 -7.43588 -5.94467 -3.97141 2.63316 3.36149 3.40370 3.42719 3.57652 3.68734 4.52030 5.26900 5.38568 5.46149 5.74099 5.77434 5.92255 6.08918 6.17470 6.29492 6.44758 6.52264 6.63453 6.78667 6.90597 6.96912 7.49931 7.71361 7.82313 8.00729 8.03425 8.45991 8.49754 9.08100 9.66073 11.14805 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.035274 B = 0.011713 C = 0.010397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.606303 B = 2389.984719 C = 2692.402624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.015 4.015 3 C -0.136 4.136 4 C 0.087 3.913 5 N -0.312 5.312 6 N -0.496 5.496 7 H 0.428 0.572 8 C 0.024 3.976 9 C -0.179 4.179 10 C 0.085 3.915 11 C -0.504 4.504 12 H 0.053 0.947 13 C 0.057 3.943 14 N -0.897 5.897 15 Si 0.890 3.110 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.277 1.277 19 H 0.054 0.946 20 H 0.053 0.947 21 H 0.052 0.948 22 H 0.099 0.901 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.166 0.834 27 H 0.022 0.978 28 H 0.027 0.973 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.070 4.495 5.896 8.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.035 4.035 3 C -0.194 4.194 4 C -0.079 4.079 5 N -0.136 5.136 6 N -0.205 5.205 7 H 0.270 0.730 8 C -0.120 4.120 9 C -0.189 4.189 10 C 0.047 3.953 11 C -0.543 4.543 12 H 0.071 0.929 13 C -0.144 4.144 14 N -0.537 5.537 15 Si 0.718 3.282 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.202 1.202 19 H 0.073 0.927 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.118 0.882 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.183 0.817 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.598 5.180 6.488 10.014 hybrid contribution 1.503 -0.313 -0.244 1.555 sum -4.094 4.868 6.244 8.913 Atomic orbital electron populations 1.21790 0.94996 1.01586 1.01240 1.19562 0.94734 0.95345 0.93892 1.21740 1.01643 0.95124 1.00934 1.22091 0.97613 0.95576 0.92670 1.76995 1.21069 1.14293 1.01219 1.46010 1.43053 1.23254 1.08152 0.73007 1.22263 1.00850 0.97090 0.91776 1.20856 1.02971 0.99114 0.95993 1.17640 0.95212 0.94089 0.88365 1.21103 1.07617 1.13599 1.11936 0.92892 1.24989 0.97605 0.95101 0.96655 1.69946 1.39771 1.23385 1.20548 0.86693 0.83832 0.79586 0.78113 1.20403 1.21339 1.20242 0.92674 0.92803 0.92870 0.88239 0.92996 0.92338 0.92776 0.81673 0.95973 0.95529 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.18 37.16 0.34 -1.82 15 2 C -0.01 -0.28 3.30 -91.77 -0.30 -0.58 15 3 C -0.14 -2.29 9.17 37.15 0.34 -1.95 15 4 C 0.09 1.81 5.73 -82.40 -0.47 1.34 15 5 N -0.31 -6.11 12.70 33.67 0.43 -5.69 15 6 N -0.50 -8.47 7.36 30.44 0.22 -8.24 15 7 H 0.43 5.47 8.96 -182.61 -1.64 3.83 15 8 C 0.02 0.46 11.90 -17.23 -0.21 0.26 15 9 C -0.18 -3.99 5.29 -105.05 -0.56 -4.55 15 10 C 0.08 2.19 5.02 -29.03 -0.15 2.05 15 11 C -0.50 -14.08 9.09 -34.44 -0.31 -14.39 15 12 H 0.05 1.49 7.74 -52.49 -0.41 1.08 15 13 C 0.06 1.61 5.46 -17.82 -0.10 1.52 15 14 N -0.90 -26.42 13.29 55.43 0.74 -25.68 15 15 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 15 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 19 H 0.05 0.74 8.14 -51.93 -0.42 0.31 15 20 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 21 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 22 H 0.10 2.03 7.03 -51.93 -0.37 1.67 15 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.06 1.07 8.14 -51.93 -0.42 0.64 15 25 H 0.05 0.78 8.14 -51.93 -0.42 0.35 15 26 H 0.17 2.68 8.06 -52.48 -0.42 2.25 15 27 H 0.02 0.59 8.14 -51.93 -0.42 0.17 15 28 H 0.03 0.72 7.46 -51.93 -0.39 0.33 15 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 LS Contribution 252.90 15.07 3.81 3.81 Total: -1.00 -30.99 252.90 -6.54 -37.53 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.31 Total: -0.17 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -1.41 Total: -18.13 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 1.39 Total: -39.61 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.99 -6.54 -37.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279168.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.009 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds