Wall clock time and date at job start Mon Mar 30 2020 02:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47178 * 2 1 4 4 C 1.50709 * 109.46805 * 119.99959 * 2 1 3 5 5 H 1.07992 * 120.00098 * 120.00109 * 4 2 1 6 6 C 1.37871 * 119.99621 * 299.99870 * 4 2 1 7 7 N 1.31515 * 120.00624 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99964 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47114 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47647 * 119.99786 * 8 6 4 11 11 H 1.48505 * 109.47320 * 240.00151 * 8 6 4 12 12 C 1.52997 * 109.47261 * 239.99343 * 2 1 3 13 13 C 1.50697 * 109.47050 * 65.00682 * 12 2 1 14 14 C 1.34669 * 126.59585 * 85.16185 * 13 12 2 15 15 N 1.34133 * 108.02235 * 180.28483 * 14 13 12 16 16 C 1.30502 * 109.25197 * 359.73051 * 15 14 13 17 17 N 1.35041 * 108.70384 * 0.02562 * 16 15 14 18 18 C 1.46499 * 126.39764 * 180.02562 * 17 16 15 19 19 H 1.08999 * 109.46975 * 60.00433 * 1 2 3 20 20 H 1.08996 * 109.47178 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47724 * 300.00353 * 1 2 3 22 22 H 0.96995 * 120.00618 * 179.97438 * 7 6 4 23 23 H 1.08994 * 109.47561 * 305.00241 * 12 2 1 24 24 H 1.09007 * 109.47427 * 185.00118 * 12 2 1 25 25 H 1.07993 * 125.98713 * 0.05405 * 14 13 12 26 26 H 1.08005 * 125.64657 * 180.02562 * 16 15 14 27 27 H 1.09002 * 109.47391 * 90.01916 * 18 17 16 28 28 H 1.09001 * 109.46813 * 330.01972 * 18 17 16 29 29 H 1.09004 * 109.47041 * 210.02099 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4827 7 7 0.9426 0.8297 2.6034 8 14 2.3222 -1.1194 4.0080 9 1 3.1471 -2.2863 3.6040 10 1 3.1470 -0.1857 4.8162 11 1 1.1674 -1.5865 4.8166 12 6 2.0400 -0.7214 -1.2491 13 6 1.6414 0.0569 -2.4765 14 6 2.3090 1.0907 -3.0235 15 7 1.6218 1.5067 -4.0977 16 6 0.5568 0.7661 -4.2404 17 7 0.5326 -0.1529 -3.2513 18 6 -0.4915 -1.1796 -3.0434 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 0.7079 1.1609 3.4843 23 1 1.6054 -1.7199 -1.2950 24 1 3.1263 -0.7996 -1.2055 25 1 3.2334 1.5134 -2.6587 26 1 -0.1828 0.8709 -5.0205 27 1 -0.2133 -2.0849 -3.5830 28 1 -1.4504 -0.8164 -3.4133 29 1 -0.5730 -1.4014 -1.9793 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261281266.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:10 Heat of formation + Delta-G solvation = 46.334154 kcal Electronic energy + Delta-G solvation = -12185.104746 eV Core-core repulsion = 10108.961596 eV Total energy + Delta-G solvation = -2076.143150 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.55638 -35.17053 -33.47046 -31.80160 -28.93652 -26.59853 -25.44172 -24.85577 -20.98083 -20.41369 -18.72884 -16.64217 -16.13079 -15.32354 -14.53182 -14.19765 -13.30270 -12.89589 -12.76762 -12.54140 -12.52667 -12.06571 -11.47672 -11.20440 -10.95482 -10.59650 -10.14364 -9.83868 -9.69263 -9.39171 -9.03992 -8.82884 -8.35820 -7.65960 -6.00531 -4.08407 2.60855 3.27797 3.28234 3.36274 3.39545 3.69798 4.41581 5.03428 5.10605 5.30092 5.35723 5.40468 5.67255 5.90594 6.08044 6.38738 6.51790 6.67960 6.84007 6.94178 7.07497 7.33421 7.35133 7.69953 7.70256 7.94877 8.11588 8.39999 8.57682 8.96056 9.57058 11.05140 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.064262 B = 0.009238 C = 0.008955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.608862 B = 3030.348557 C = 3125.873404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.050 3.950 3 H 0.031 0.969 4 C -0.515 4.515 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.889 5.889 8 Si 0.891 3.109 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 C -0.041 4.041 13 C 0.017 3.983 14 C -0.049 4.049 15 N -0.497 5.497 16 C 0.152 3.848 17 N -0.458 5.458 18 C 0.067 3.933 19 H 0.006 0.994 20 H 0.021 0.979 21 H 0.082 0.918 22 H 0.259 0.741 23 H 0.054 0.946 24 H 0.074 0.926 25 H 0.164 0.836 26 H 0.196 0.804 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.712 -3.998 -8.548 9.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.031 3.969 3 H 0.049 0.951 4 C -0.554 4.554 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.719 3.281 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.080 4.080 13 C -0.098 4.098 14 C -0.196 4.196 15 N -0.215 5.215 16 C -0.129 4.129 17 N -0.142 5.142 18 C -0.076 4.076 19 H 0.025 0.975 20 H 0.040 0.960 21 H 0.100 0.900 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.092 0.908 25 H 0.181 0.819 26 H 0.212 0.788 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.674 -3.337 -8.915 9.887 hybrid contribution -0.125 -1.078 1.385 1.760 sum -2.798 -4.415 -7.530 9.166 Atomic orbital electron populations 1.21859 0.99098 0.98176 1.00109 1.18669 0.92483 0.96090 0.89685 0.95120 1.21212 1.31220 1.12407 0.90528 0.92540 1.24965 0.95062 0.94950 0.99002 1.69905 1.36727 1.22921 1.23225 0.86558 0.78635 0.79724 0.83198 1.19766 1.20994 1.21121 1.20416 1.00730 0.96883 0.89954 1.21844 0.89193 1.01760 0.96991 1.21943 1.02666 0.98785 0.96169 1.70150 1.05652 1.26465 1.19264 1.24655 1.00545 0.91563 0.96132 1.45237 1.19694 1.26636 1.22664 1.22106 0.90145 0.90264 1.05045 0.97519 0.95975 0.89979 0.93060 0.92731 0.90770 0.81852 0.78759 0.91232 0.90098 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 7.63 37.15 0.28 -2.89 15 2 C 0.05 1.21 2.29 -91.77 -0.21 1.00 15 3 H 0.03 0.84 8.14 -51.93 -0.42 0.42 15 4 C -0.52 -13.81 8.56 -34.44 -0.29 -14.11 15 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 15 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 15 7 N -0.89 -25.38 11.32 55.43 0.63 -24.75 15 8 Si 0.89 20.96 29.54 -169.99 -5.02 15.93 15 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 12 C -0.04 -0.84 4.81 -27.89 -0.13 -0.97 15 13 C 0.02 0.33 5.29 -81.60 -0.43 -0.10 15 14 C -0.05 -0.97 11.79 -17.81 -0.21 -1.18 15 15 N -0.50 -9.58 11.25 -14.66 -0.16 -9.75 15 16 C 0.15 2.47 12.56 -90.37 -1.14 1.33 15 17 N -0.46 -7.59 2.85 -121.36 -0.35 -7.93 15 18 C 0.07 0.85 10.36 59.85 0.62 1.47 15 19 H 0.01 0.13 6.50 -51.93 -0.34 -0.21 15 20 H 0.02 0.48 7.28 -51.93 -0.38 0.10 15 21 H 0.08 2.19 6.07 -51.93 -0.32 1.87 15 22 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 23 H 0.05 1.05 7.63 -51.93 -0.40 0.65 15 24 H 0.07 1.47 8.14 -51.93 -0.42 1.05 15 25 H 0.16 3.01 8.06 -52.49 -0.42 2.59 15 26 H 0.20 2.28 8.06 -52.48 -0.42 1.85 15 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 15 29 H 0.10 1.37 5.29 -51.93 -0.27 1.10 15 LS Contribution 242.36 15.07 3.65 3.65 Total: -1.00 -30.61 242.36 -6.64 -37.25 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -3.78 Total: -0.54 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -1.61 Total: -13.87 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.12 Total: -42.43 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.61 -6.64 -37.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261281266.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.582 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds