Wall clock time and date at job start Mon Mar 30 2020 02:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47178 * 2 1 4 4 C 1.50709 * 109.46805 * 119.99959 * 2 1 3 5 5 H 1.07992 * 120.00098 * 120.00109 * 4 2 1 6 6 C 1.37871 * 119.99621 * 299.99870 * 4 2 1 7 7 N 1.31515 * 120.00624 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99964 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47114 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47647 * 119.99786 * 8 6 4 11 11 H 1.48505 * 109.47320 * 240.00151 * 8 6 4 12 12 C 1.52997 * 109.47261 * 239.99343 * 2 1 3 13 13 C 1.50697 * 109.47050 * 65.00682 * 12 2 1 14 14 C 1.34669 * 126.59585 * 85.16185 * 13 12 2 15 15 N 1.34133 * 108.02235 * 180.28483 * 14 13 12 16 16 C 1.30502 * 109.25197 * 359.73051 * 15 14 13 17 17 N 1.35041 * 108.70384 * 0.02562 * 16 15 14 18 18 C 1.46499 * 126.39764 * 180.02562 * 17 16 15 19 19 H 1.08999 * 109.46975 * 60.00433 * 1 2 3 20 20 H 1.08996 * 109.47178 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47724 * 300.00353 * 1 2 3 22 22 H 0.96995 * 120.00618 * 179.97438 * 7 6 4 23 23 H 1.08994 * 109.47561 * 305.00241 * 12 2 1 24 24 H 1.09007 * 109.47427 * 185.00118 * 12 2 1 25 25 H 1.07993 * 125.98713 * 0.05405 * 14 13 12 26 26 H 1.08005 * 125.64657 * 180.02562 * 16 15 14 27 27 H 1.09002 * 109.47391 * 90.01916 * 18 17 16 28 28 H 1.09001 * 109.46813 * 330.01972 * 18 17 16 29 29 H 1.09004 * 109.47041 * 210.02099 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4827 7 7 0.9426 0.8297 2.6034 8 14 2.3222 -1.1194 4.0080 9 1 3.1471 -2.2863 3.6040 10 1 3.1470 -0.1857 4.8162 11 1 1.1674 -1.5865 4.8166 12 6 2.0400 -0.7214 -1.2491 13 6 1.6414 0.0569 -2.4765 14 6 2.3090 1.0907 -3.0235 15 7 1.6218 1.5067 -4.0977 16 6 0.5568 0.7661 -4.2404 17 7 0.5326 -0.1529 -3.2513 18 6 -0.4915 -1.1796 -3.0434 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 0.7079 1.1609 3.4843 23 1 1.6054 -1.7199 -1.2950 24 1 3.1263 -0.7996 -1.2055 25 1 3.2334 1.5134 -2.6587 26 1 -0.1828 0.8709 -5.0205 27 1 -0.2133 -2.0849 -3.5830 28 1 -1.4504 -0.8164 -3.4133 29 1 -0.5730 -1.4014 -1.9793 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261281266.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:10 Heat of formation + Delta-G solvation = 29.006838 kcal Electronic energy + Delta-G solvation = -12185.856115 eV Core-core repulsion = 10108.961596 eV Total energy + Delta-G solvation = -2076.894519 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.91257 -37.02759 -34.79097 -33.69477 -30.58839 -27.78950 -27.26917 -26.65754 -22.52165 -21.96183 -20.27485 -18.43565 -17.66796 -16.80147 -16.31038 -15.66191 -14.88238 -14.54853 -14.41627 -14.00659 -13.68084 -13.34993 -13.29257 -12.99676 -12.84291 -12.41854 -12.09931 -11.66931 -11.54769 -10.92137 -10.77392 -10.46228 -10.31586 -9.13195 -8.08048 -6.23486 1.24153 1.42103 1.44636 1.55616 2.07421 2.28114 2.44960 3.19927 3.91059 4.02180 4.08573 4.36022 4.46951 4.59442 4.71878 4.75808 4.88121 4.93505 5.10576 5.20223 5.35426 5.54403 5.62254 5.87484 5.95338 6.13316 6.34839 6.47310 6.89628 7.20837 7.45956 8.96702 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.064262 B = 0.009238 C = 0.008955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.608862 B = 3030.348557 C = 3125.873404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.048 3.952 3 H -0.011 1.011 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.263 1.263 10 H -0.284 1.284 11 H -0.281 1.281 12 C -0.026 4.026 13 C -0.003 4.003 14 C -0.068 4.068 15 N -0.533 5.533 16 C 0.171 3.829 17 N -0.458 5.458 18 C 0.060 3.940 19 H 0.019 0.981 20 H 0.035 0.965 21 H 0.048 0.952 22 H 0.260 0.740 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.160 0.840 26 H 0.243 0.757 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.532 -5.364 -9.448 11.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.030 3.970 3 H 0.007 0.993 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.782 3.218 9 H -0.187 1.187 10 H -0.210 1.210 11 H -0.207 1.207 12 C -0.065 4.065 13 C -0.119 4.119 14 C -0.215 4.215 15 N -0.252 5.252 16 C -0.111 4.111 17 N -0.141 5.141 18 C -0.081 4.081 19 H 0.037 0.963 20 H 0.054 0.946 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.177 0.823 26 H 0.259 0.741 27 H 0.113 0.887 28 H 0.132 0.868 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.498 -4.728 -9.817 11.444 hybrid contribution 0.088 -0.629 1.588 1.710 sum -3.409 -5.357 -8.230 10.395 Atomic orbital electron populations 1.21626 0.98286 0.98622 0.98978 1.18587 0.93116 0.94059 0.91276 0.99260 1.21595 1.31124 1.12559 0.91626 0.92208 1.25769 0.95273 0.95638 1.02090 1.70053 1.37873 1.24325 1.23814 0.85535 0.78138 0.78742 0.79406 1.18717 1.21032 1.20679 1.20094 1.00579 0.97041 0.88750 1.21564 0.90802 1.02123 0.97367 1.22086 1.03166 0.99305 0.96895 1.70140 1.07241 1.28115 1.19666 1.25585 0.99914 0.89625 0.95955 1.45457 1.19408 1.27252 1.21995 1.22401 0.90633 0.90520 1.04528 0.96252 0.94594 0.93329 0.93127 0.91390 0.90966 0.82269 0.74093 0.88688 0.86789 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 7.63 71.98 0.55 -4.98 15 2 C 0.05 2.41 2.29 -11.54 -0.03 2.38 15 3 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 15 4 C -0.53 -28.57 8.56 25.60 0.22 -28.35 15 5 H 0.06 3.10 7.74 -2.91 -0.02 3.08 15 6 C 0.01 0.58 5.30 84.65 0.45 1.03 15 7 N -0.92 -53.52 11.32 21.45 0.24 -53.28 15 8 Si 0.96 42.96 29.54 68.60 2.03 44.99 15 9 H -0.26 -11.30 7.11 99.48 0.71 -10.59 15 10 H -0.28 -12.71 7.11 99.48 0.71 -12.01 15 11 H -0.28 -12.36 7.11 99.48 0.71 -11.66 15 12 C -0.03 -1.05 4.81 29.85 0.14 -0.91 15 13 C 0.00 -0.10 5.29 40.95 0.22 0.12 15 14 C -0.07 -2.70 11.79 83.52 0.98 -1.72 15 15 N -0.53 -19.88 11.25 -200.31 -2.25 -22.14 15 16 C 0.17 5.03 12.56 180.26 2.26 7.29 15 17 N -0.46 -13.96 2.85 -537.87 -1.53 -15.49 15 18 C 0.06 1.30 10.36 127.77 1.32 2.62 15 19 H 0.02 0.82 6.50 -2.39 -0.02 0.80 15 20 H 0.04 1.54 7.28 -2.39 -0.02 1.52 15 21 H 0.05 2.62 6.07 -2.39 -0.01 2.60 15 22 H 0.26 14.35 8.31 -92.71 -0.77 13.58 15 23 H 0.07 2.52 7.63 -2.39 -0.02 2.51 15 24 H 0.07 2.88 8.14 -2.38 -0.02 2.86 15 25 H 0.16 6.12 8.06 -2.91 -0.02 6.09 15 26 H 0.24 4.45 8.06 -2.91 -0.02 4.42 15 27 H 0.09 1.60 8.14 -2.39 -0.02 1.58 15 28 H 0.11 1.71 8.14 -2.39 -0.02 1.69 15 29 H 0.08 2.02 5.29 -2.38 -0.01 2.01 15 Total: -1.00 -66.31 242.36 5.73 -60.57 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 1.12 Total: 7.86 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: 6.12 Total: -22.51 kcal Atomic # 7 Polarization: -87.37 SS G_CDS: -3.54 Total: -90.91 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -66.31 5.73 -60.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261281266.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.579 kcal (2) G-P(sol) polarization free energy of solvation -66.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds