Wall clock time and date at job start Mon Mar 30 2020 01:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47070 * 2 1 4 4 C 1.34520 * 125.78625 * 90.00256 * 3 2 1 5 5 C 1.41381 * 106.83580 * 180.29744 * 4 3 2 6 6 C 1.34513 * 106.84363 * 359.57150 * 5 4 3 7 7 C 1.50698 * 125.78877 * 180.18958 * 6 5 4 8 8 H 1.09001 * 109.47392 * 0.30576 * 7 6 5 9 9 C 1.52999 * 109.46919 * 240.30536 * 7 6 5 10 10 C 1.50700 * 109.47289 * 120.30621 * 7 6 5 11 11 H 1.07998 * 119.99867 * 359.97438 * 10 7 6 12 12 C 1.37878 * 120.00141 * 180.02562 * 10 7 6 13 13 N 1.31516 * 119.99923 * 359.97438 * 12 10 7 14 14 Si 1.86804 * 119.99988 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.46914 * 59.99626 * 14 12 10 16 16 H 1.48495 * 109.46868 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46732 * 299.99743 * 14 12 10 18 18 O 1.34302 * 125.79164 * 270.04068 * 3 2 1 19 19 H 1.09001 * 109.47233 * 60.00339 * 1 2 3 20 20 H 1.09005 * 109.46946 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47147 * 299.99667 * 1 2 3 22 22 H 1.08999 * 109.47588 * 240.00178 * 2 1 3 23 23 H 1.09001 * 109.47044 * 120.00179 * 2 1 3 24 24 H 1.08002 * 126.57789 * 0.02807 * 4 3 2 25 25 H 1.08009 * 126.57222 * 179.73218 * 5 4 3 26 26 H 1.09002 * 109.47473 * 60.00500 * 9 7 6 27 27 H 1.09003 * 109.47088 * 179.97438 * 9 7 6 28 28 H 1.09001 * 109.47121 * 300.00206 * 9 7 6 29 29 H 0.96993 * 119.99686 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2945 2.1625 1.0912 5 6 2.7336 3.4255 0.6321 6 6 2.7225 3.3770 -0.7121 7 6 3.1188 4.4983 -1.6377 8 1 3.4248 5.3638 -1.0499 9 6 1.9273 4.8764 -2.5200 10 6 4.2655 4.0506 -2.5070 11 1 4.6674 3.0540 -2.3996 12 6 4.8022 4.9138 -3.4387 13 7 4.3130 6.1276 -3.5690 14 14 6.2232 4.3586 -4.5167 15 1 5.8055 3.1802 -5.3180 16 1 6.6137 5.4636 -5.4286 17 1 7.3795 3.9905 -3.6606 18 8 2.2934 2.1616 -1.0894 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.1859 1.8538 2.1205 25 1 3.0248 4.2669 1.2435 26 1 1.0979 5.2003 -1.8913 27 1 2.2138 5.6878 -3.1892 28 1 1.6214 4.0110 -3.1077 29 1 4.6904 6.7346 -4.2247 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261283645.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:11 Heat of formation + Delta-G solvation = -25.609510 kcal Electronic energy + Delta-G solvation = -11999.642100 eV Core-core repulsion = 9888.086488 eV Total energy + Delta-G solvation = -2111.555612 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.34437 -36.54114 -34.89566 -33.71827 -32.54937 -28.59179 -27.30623 -24.76614 -22.79756 -22.32119 -20.75396 -18.52250 -17.39716 -16.77042 -16.44372 -15.38259 -15.18233 -14.73379 -14.25710 -13.86121 -13.55608 -13.46205 -13.18996 -12.90162 -12.80815 -12.40235 -12.29595 -12.20832 -11.90295 -11.63168 -11.19959 -10.64307 -10.55982 -8.98665 -8.16843 -6.33121 1.01310 1.40405 1.42148 1.50427 1.85103 2.26777 2.40816 3.10117 3.88166 4.18019 4.28432 4.35079 4.43095 4.66359 4.73211 4.91456 4.96941 4.98014 5.02017 5.07663 5.25561 5.32635 5.41302 5.50363 5.67602 5.83542 5.92660 6.17358 6.54325 6.71123 7.34815 8.87113 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.049776 B = 0.009555 C = 0.009042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.388562 B = 2929.785319 C = 3095.808268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.037 4.037 3 C -0.051 4.051 4 C -0.209 4.209 5 C -0.255 4.255 6 C 0.018 3.982 7 C 0.106 3.894 8 H 0.038 0.962 9 C -0.123 4.123 10 C -0.537 4.537 11 H 0.044 0.956 12 C 0.020 3.980 13 N -0.912 5.912 14 Si 0.961 3.039 15 H -0.273 1.273 16 H -0.275 1.275 17 H -0.271 1.271 18 O -0.193 6.193 19 H 0.039 0.961 20 H 0.090 0.910 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.116 0.884 24 H 0.172 0.828 25 H 0.148 0.852 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.025 0.975 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.050 -9.276 6.461 12.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.100 4.100 4 C -0.228 4.228 5 C -0.274 4.274 6 C -0.032 4.032 7 C 0.088 3.912 8 H 0.056 0.944 9 C -0.181 4.181 10 C -0.574 4.574 11 H 0.062 0.938 12 C -0.180 4.180 13 N -0.551 5.551 14 Si 0.785 3.215 15 H -0.198 1.198 16 H -0.200 1.200 17 H -0.196 1.196 18 O -0.091 6.091 19 H 0.058 0.942 20 H 0.108 0.892 21 H 0.080 0.920 22 H 0.096 0.904 23 H 0.134 0.866 24 H 0.189 0.811 25 H 0.166 0.834 26 H 0.049 0.951 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.070 -9.204 6.063 12.132 hybrid contribution 0.842 0.301 -0.469 1.009 sum -4.229 -8.903 5.594 11.333 Atomic orbital electron populations 1.21765 0.93174 1.03329 1.01852 1.20209 0.96984 0.85367 1.04868 1.23257 1.05853 0.96851 0.84088 1.21732 1.07333 0.93611 1.00133 1.21763 1.11208 1.00760 0.93667 1.23325 0.99219 0.85305 0.95374 1.17457 0.94135 0.88057 0.91553 0.94395 1.21619 0.95831 1.00914 0.99740 1.21199 1.16633 0.99449 1.20164 0.93790 1.25698 0.99440 0.94812 0.98001 1.69961 1.42481 1.06752 1.35869 0.85570 0.79296 0.78045 0.78542 1.19823 1.20035 1.19643 1.83963 1.65574 1.23153 1.36378 0.94203 0.89169 0.92028 0.90442 0.86575 0.81064 0.83444 0.95076 0.91012 0.95621 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.89 71.98 0.71 -2.31 15 2 C -0.04 -0.92 6.47 29.85 0.19 -0.73 15 3 C -0.05 -1.85 6.58 24.83 0.16 -1.69 15 4 C -0.21 -7.35 10.81 22.19 0.24 -7.11 15 5 C -0.25 -10.72 10.78 22.19 0.24 -10.48 15 6 C 0.02 0.88 5.76 24.83 0.14 1.02 15 7 C 0.11 5.74 2.71 -12.29 -0.03 5.70 15 8 H 0.04 2.15 8.10 -2.39 -0.02 2.13 15 9 C -0.12 -6.33 8.95 71.98 0.64 -5.69 15 10 C -0.54 -31.14 8.55 25.60 0.22 -30.92 15 11 H 0.04 2.60 7.74 -2.91 -0.02 2.58 15 12 C 0.02 1.13 5.30 84.65 0.45 1.58 15 13 N -0.91 -52.45 11.32 21.45 0.24 -52.20 15 14 Si 0.96 44.23 29.54 68.60 2.03 46.26 15 15 H -0.27 -12.36 7.11 99.48 0.71 -11.65 15 16 H -0.28 -12.12 7.11 99.48 0.71 -11.42 15 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 18 O -0.19 -8.99 10.65 -2.47 -0.03 -9.02 15 19 H 0.04 0.98 8.14 -2.39 -0.02 0.96 15 20 H 0.09 1.35 8.14 -2.38 -0.02 1.33 15 21 H 0.06 1.24 8.14 -2.39 -0.02 1.22 15 22 H 0.08 1.89 8.14 -2.39 -0.02 1.87 15 23 H 0.12 2.15 8.14 -2.39 -0.02 2.13 15 24 H 0.17 4.57 8.06 -2.91 -0.02 4.55 15 25 H 0.15 5.69 8.06 -2.91 -0.02 5.66 15 26 H 0.03 1.41 8.14 -2.39 -0.02 1.39 15 27 H 0.07 3.93 6.07 -2.39 -0.01 3.91 15 28 H 0.02 1.28 8.14 -2.39 -0.02 1.26 15 29 H 0.27 14.47 8.31 -92.71 -0.77 13.70 15 Total: -1.00 -63.78 251.96 6.32 -57.46 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 1.11 Total: 8.13 kcal Atomic # 6 Polarization: -53.59 SS G_CDS: 2.97 Total: -50.62 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.24 Total: -52.20 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.03 Total: -9.02 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -63.78 6.32 -57.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261283645.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.850 kcal (2) G-P(sol) polarization free energy of solvation -63.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds