Wall clock time and date at job start Mon Mar 30 2020 02:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47426 * 2 1 4 4 C 1.39285 * 126.40443 * 269.97830 * 3 2 1 5 5 C 1.41593 * 126.55665 * 359.73362 * 4 3 2 6 6 H 1.07999 * 119.99940 * 359.97438 * 5 4 3 7 7 C 1.39692 * 119.99834 * 180.02562 * 5 4 3 8 8 N 1.31027 * 120.00313 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99757 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47315 * 59.99654 * 9 7 5 11 11 H 1.48506 * 109.47038 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46917 * 299.99245 * 9 7 5 13 13 C 1.41883 * 106.88287 * 179.97438 * 4 3 2 14 14 N 1.30317 * 108.04937 * 0.02562 * 13 4 3 15 15 N 1.34495 * 126.40752 * 89.97160 * 3 2 1 16 16 C 1.46500 * 125.67787 * 359.96919 * 15 3 2 17 17 C 1.53006 * 109.47202 * 89.99402 * 16 15 3 18 18 H 1.08995 * 109.47570 * 180.02562 * 1 2 3 19 19 H 1.09003 * 109.46853 * 300.00556 * 1 2 3 20 20 H 1.09004 * 109.47220 * 59.99673 * 1 2 3 21 21 H 1.09007 * 109.46884 * 239.99941 * 2 1 3 22 22 H 1.08999 * 109.46782 * 120.00171 * 2 1 3 23 23 H 0.96994 * 120.00344 * 180.02562 * 8 7 5 24 24 H 1.07998 * 125.97224 * 179.97438 * 13 4 3 25 25 H 1.09001 * 109.47616 * 209.99567 * 16 15 3 26 26 H 1.09001 * 109.46740 * 330.00227 * 16 15 3 27 27 H 1.09001 * 109.46970 * 300.00561 * 17 16 15 28 28 H 1.09005 * 109.47038 * 60.00584 * 17 16 15 29 29 H 1.08996 * 109.47166 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3084 2.2000 -1.1210 5 6 2.1755 1.8069 -2.4748 6 1 1.8295 0.8129 -2.7170 7 6 2.4931 2.7044 -3.4971 8 7 2.9134 3.9101 -3.2032 9 14 2.3171 2.1860 -5.2831 10 1 0.9045 1.8179 -5.5548 11 1 2.7148 3.3115 -6.1667 12 1 3.1932 1.0165 -5.5476 13 6 2.7535 3.4610 -0.6469 14 7 2.7420 3.4295 0.6558 15 7 2.2980 2.1736 1.0824 16 6 2.1465 1.7491 2.4764 17 6 3.4536 1.1197 2.9628 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5139 0.8900 23 1 3.1336 4.5334 -3.9130 24 1 3.0506 4.2999 -1.2587 25 1 1.9071 2.6137 3.0956 26 1 1.3422 1.0170 2.5479 27 1 3.6930 0.2552 2.3437 28 1 4.2580 1.8518 2.8914 29 1 3.3407 0.8036 3.9998 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261293893.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:26 Heat of formation + Delta-G solvation = 33.932574 kcal Electronic energy + Delta-G solvation = -12234.220723 eV Core-core repulsion = 10157.539800 eV Total energy + Delta-G solvation = -2076.680923 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.24533 -35.79005 -34.78709 -34.02677 -30.30845 -29.80968 -26.74300 -24.27331 -23.83011 -21.50696 -19.93628 -18.64075 -16.71477 -16.59012 -15.73758 -15.43614 -14.90889 -14.56060 -14.30620 -13.65337 -13.26312 -13.09146 -12.90413 -12.82204 -12.64485 -12.57629 -12.16124 -11.95313 -11.76767 -11.52296 -11.08659 -10.71647 -9.51308 -9.02709 -8.30104 -5.93054 1.32252 1.45067 1.56302 1.60779 2.29004 2.36659 2.44508 3.59786 3.95408 4.24076 4.27302 4.31185 4.44341 4.66712 4.71195 4.80645 4.88916 5.08510 5.10626 5.18102 5.27244 5.36998 5.49306 5.77787 5.81164 6.17970 6.64208 6.84030 7.19171 7.22901 7.61063 8.70807 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.045670 B = 0.011924 C = 0.010103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.941838 B = 2347.674592 C = 2770.683931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.025 4.025 3 C -0.069 4.069 4 C -0.067 4.067 5 C -0.463 4.463 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.875 5.875 9 Si 0.985 3.015 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.265 1.265 13 C -0.006 4.006 14 N -0.362 5.362 15 N -0.379 5.379 16 C 0.128 3.872 17 C -0.157 4.157 18 H 0.081 0.919 19 H 0.048 0.952 20 H 0.034 0.966 21 H 0.065 0.935 22 H 0.077 0.923 23 H 0.276 0.724 24 H 0.183 0.817 25 H 0.084 0.916 26 H 0.102 0.898 27 H 0.052 0.948 28 H 0.038 0.962 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 -7.376 5.986 9.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.064 4.064 3 C -0.194 4.194 4 C -0.076 4.076 5 C -0.498 4.498 6 H 0.088 0.912 7 C -0.190 4.190 8 N -0.508 5.508 9 Si 0.807 3.193 10 H -0.189 1.189 11 H -0.202 1.202 12 H -0.189 1.189 13 C -0.190 4.190 14 N -0.186 5.186 15 N -0.167 5.167 16 C 0.007 3.993 17 C -0.215 4.215 18 H 0.100 0.900 19 H 0.067 0.933 20 H 0.054 0.946 21 H 0.084 0.916 22 H 0.095 0.905 23 H 0.086 0.914 24 H 0.200 0.800 25 H 0.102 0.898 26 H 0.120 0.880 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.369 -6.566 7.047 9.918 hybrid contribution 0.022 -0.057 -1.655 1.656 sum -2.346 -6.622 5.392 8.856 Atomic orbital electron populations 1.21652 0.94519 1.01989 1.00935 1.19741 0.96058 0.88556 1.02032 1.21460 1.14273 0.96913 0.86751 1.18383 1.03001 0.92431 0.93834 1.18948 1.41366 0.99553 0.89909 0.91181 1.26506 0.93194 0.94274 1.05057 1.69580 1.39449 1.06649 1.35148 0.85206 0.79278 0.78253 0.76519 1.18935 1.20160 1.18949 1.24827 1.03120 1.00808 0.90196 1.76457 1.25002 1.02270 1.14920 1.47941 1.53956 1.09159 1.05674 1.21656 0.99587 1.00299 0.77805 1.22119 0.96372 1.00293 1.02712 0.90047 0.93295 0.94635 0.91599 0.90499 0.91402 0.80041 0.89769 0.87957 0.92934 0.94263 0.87744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 9.89 71.98 0.71 -3.54 15 2 C -0.02 -0.91 5.73 29.85 0.17 -0.74 15 3 C -0.07 -3.30 6.31 42.40 0.27 -3.03 15 4 C -0.07 -3.78 5.93 -21.30 -0.13 -3.91 15 5 C -0.46 -26.11 9.13 23.45 0.21 -25.90 15 6 H 0.07 3.74 7.33 -2.91 -0.02 3.72 15 7 C 0.02 0.86 5.49 85.16 0.47 1.33 15 8 N -0.88 -49.20 10.33 21.79 0.22 -48.98 15 9 Si 0.98 41.42 29.56 68.60 2.03 43.45 15 10 H -0.26 -10.75 7.11 99.48 0.71 -10.04 15 11 H -0.28 -11.23 7.11 99.48 0.71 -10.52 15 12 H -0.26 -10.76 7.11 99.48 0.71 -10.05 15 13 C -0.01 -0.32 10.91 85.82 0.94 0.62 15 14 N -0.36 -19.41 12.47 -55.94 -0.70 -20.10 15 15 N -0.38 -17.29 3.58 -331.78 -1.19 -18.48 15 16 C 0.13 4.10 6.75 86.38 0.58 4.68 15 17 C -0.16 -4.29 10.24 71.98 0.74 -3.56 15 18 H 0.08 2.00 8.14 -2.39 -0.02 1.98 15 19 H 0.05 1.48 8.14 -2.39 -0.02 1.46 15 20 H 0.03 1.31 8.14 -2.39 -0.02 1.29 15 21 H 0.07 2.52 7.58 -2.38 -0.02 2.50 15 22 H 0.08 2.34 7.71 -2.39 -0.02 2.32 15 23 H 0.28 14.30 8.30 -92.71 -0.77 13.53 15 24 H 0.18 11.03 5.77 -2.91 -0.02 11.02 15 25 H 0.08 2.56 8.14 -2.39 -0.02 2.54 15 26 H 0.10 2.71 7.63 -2.39 -0.02 2.70 15 27 H 0.05 1.49 8.14 -2.39 -0.02 1.47 15 28 H 0.04 1.23 8.14 -2.38 -0.02 1.21 15 29 H 0.10 1.97 8.14 -2.39 -0.02 1.95 15 Total: -1.00 -66.55 248.96 5.45 -61.09 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 1.12 Total: 17.07 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 3.96 Total: -34.05 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -1.66 Total: -87.56 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -66.55 5.45 -61.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261293893.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.026 kcal (2) G-P(sol) polarization free energy of solvation -66.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds