Wall clock time and date at job start Mon Mar 30 2020 01:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13612 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47306 * 26.72196 * 3 2 1 5 5 C 1.50698 * 109.47721 * 175.00033 * 4 3 2 6 6 H 1.07995 * 120.00485 * 119.99509 * 5 4 3 7 7 C 1.37880 * 119.99796 * 300.00708 * 5 4 3 8 8 N 1.31514 * 119.99726 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00037 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47213 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46909 * 119.99481 * 9 7 5 12 12 H 1.48501 * 109.46992 * 239.99341 * 9 7 5 13 13 N 1.46904 * 109.47449 * 295.00251 * 4 3 2 14 14 C 1.48538 * 110.99798 * 57.59710 * 13 4 3 15 15 C 1.54938 * 103.22426 * 159.72737 * 14 13 4 16 16 C 1.54605 * 102.91896 * 322.58571 * 15 14 13 17 17 C 1.47891 * 111.00380 * 174.99967 * 13 4 3 18 18 H 1.09002 * 109.47132 * 146.72353 * 3 2 1 19 19 H 1.09001 * 109.47213 * 266.72382 * 3 2 1 20 20 H 1.09008 * 109.47017 * 54.99907 * 4 3 2 21 21 H 0.97005 * 120.00053 * 180.02562 * 8 7 5 22 22 H 1.08996 * 110.67036 * 278.16306 * 14 13 4 23 23 H 1.08997 * 110.66605 * 41.29432 * 14 13 4 24 24 H 1.08998 * 110.72438 * 204.23567 * 15 14 13 25 25 H 1.08997 * 110.72639 * 80.94204 * 15 14 13 26 26 H 1.08994 * 110.31135 * 263.04121 * 16 15 14 27 27 H 1.09005 * 110.30324 * 140.87801 * 16 15 14 28 28 H 1.08999 * 109.91757 * 333.50604 * 17 13 4 29 29 H 1.08999 * 109.91806 * 94.60601 * 17 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1187 -1.2875 -0.6486 5 6 4.6205 -1.2329 -0.7601 6 1 5.2262 -1.9786 -0.2667 7 6 5.2215 -0.2306 -1.4917 8 7 4.4839 0.6774 -2.0927 9 14 7.0831 -0.1624 -1.6294 10 1 7.6775 -1.2896 -0.8670 11 1 7.4781 -0.2671 -3.0570 12 1 7.5738 1.1241 -1.0731 13 7 2.7306 -2.4388 0.1772 14 6 1.2571 -2.4922 0.3571 15 6 1.0019 -3.9674 0.7563 16 6 2.0185 -4.7417 -0.1139 17 6 3.1031 -3.7111 -0.4785 18 1 2.9710 0.8600 -0.5639 19 1 2.9714 0.0596 1.0260 20 1 2.6841 -1.3907 -1.6430 21 1 4.9067 1.3824 -2.6078 22 1 0.9421 -1.8181 1.1537 23 1 0.7467 -2.2522 -0.5756 24 1 -0.0185 -4.2622 0.5116 25 1 1.2055 -4.1210 1.8160 26 1 1.5355 -5.1178 -1.0157 27 1 2.4537 -5.5640 0.4541 28 1 3.1379 -3.5754 -1.5595 29 1 4.0746 -4.0456 -0.1149 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261304637.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:51 Heat of formation + Delta-G solvation = 30.620241 kcal Electronic energy + Delta-G solvation = -12346.945550 eV Core-core repulsion = 10270.120994 eV Total energy + Delta-G solvation = -2076.824556 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.54589 -35.67978 -33.89383 -31.36902 -28.61529 -27.99623 -25.70337 -22.01345 -20.28383 -19.75513 -16.64645 -16.29180 -15.57372 -15.08574 -14.33794 -13.28107 -13.11302 -12.97001 -12.60893 -12.16582 -11.89447 -11.68307 -11.57054 -11.03591 -10.80696 -10.66682 -10.45144 -10.18939 -10.13874 -10.03562 -9.83953 -9.21678 -8.61515 -7.39260 -6.20420 -4.25618 3.23195 3.32515 3.36765 3.65112 3.68891 4.29853 4.92745 5.03598 5.21730 5.26823 5.36403 5.53297 5.89953 6.02844 6.21345 6.26982 6.36830 6.51345 6.54829 6.60139 6.66452 6.79494 7.09504 7.32371 7.64729 7.83853 8.08380 8.29540 8.50020 8.84728 9.41817 10.86975 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.036734 B = 0.013460 C = 0.010318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.062696 B = 2079.741187 C = 2713.095747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C 0.232 3.768 3 C -0.036 4.036 4 C 0.217 3.783 5 C -0.500 4.500 6 H 0.070 0.930 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.903 3.097 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.282 1.282 13 N -0.513 5.513 14 C 0.026 3.974 15 C -0.122 4.122 16 C -0.133 4.133 17 C 0.052 3.948 18 H 0.140 0.860 19 H 0.093 0.907 20 H 0.010 0.990 21 H 0.265 0.735 22 H 0.073 0.927 23 H 0.036 0.964 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.782 -5.385 2.953 6.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.182 5.182 2 C -0.082 4.082 3 C -0.077 4.077 4 C 0.109 3.891 5 C -0.538 4.538 6 H 0.088 0.912 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.730 3.270 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.208 1.208 13 N -0.238 5.238 14 C -0.103 4.103 15 C -0.160 4.160 16 C -0.171 4.171 17 C -0.076 4.076 18 H 0.157 0.843 19 H 0.111 0.889 20 H 0.028 0.972 21 H 0.075 0.925 22 H 0.092 0.908 23 H 0.054 0.946 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.173 -5.138 3.327 6.496 hybrid contribution 0.983 0.140 -0.997 1.406 sum -1.191 -4.999 2.331 5.643 Atomic orbital electron populations 1.81058 1.13678 1.12345 1.11146 1.30238 0.96360 0.90339 0.91270 1.19999 0.78270 1.05515 1.03918 1.19377 0.96241 0.83896 0.89624 1.21085 0.89862 1.12056 1.30811 0.91157 1.24995 0.98876 0.95404 0.94975 1.69798 1.35295 1.15151 1.33089 0.86355 0.84715 0.78134 0.77771 1.19570 1.21075 1.20846 1.64871 1.09196 1.02886 1.46839 1.23482 0.91143 0.96038 0.99603 1.22461 0.98045 0.95553 0.99972 1.22455 0.97043 0.98417 0.99170 1.22591 0.97912 0.89541 0.97600 0.84316 0.88936 0.97204 0.92465 0.90825 0.94585 0.92243 0.91324 0.92410 0.91797 0.93889 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.04 17.47 42.16 0.74 -10.31 15 2 C 0.23 4.96 11.34 -20.76 -0.24 4.73 15 3 C -0.04 -0.78 5.16 -29.52 -0.15 -0.94 15 4 C 0.22 5.05 1.45 -68.86 -0.10 4.95 15 5 C -0.50 -12.42 8.17 -34.44 -0.28 -12.70 15 6 H 0.07 1.76 7.56 -52.49 -0.40 1.37 15 7 C 0.06 1.49 5.29 -17.82 -0.09 1.39 15 8 N -0.89 -23.18 11.29 55.43 0.63 -22.55 15 9 Si 0.90 19.71 29.54 -169.99 -5.02 14.69 15 10 H -0.27 -5.89 7.11 56.52 0.40 -5.48 15 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 12 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 13 N -0.51 -10.69 5.10 -223.89 -1.14 -11.83 15 14 C 0.03 0.50 4.42 -1.89 -0.01 0.49 15 15 C -0.12 -1.95 7.06 -24.86 -0.18 -2.12 15 16 C -0.13 -2.05 6.93 -25.37 -0.18 -2.23 15 17 C 0.05 0.98 5.90 -2.76 -0.02 0.96 15 18 H 0.14 3.25 5.95 -51.93 -0.31 2.94 15 19 H 0.09 1.89 8.14 -51.93 -0.42 1.47 15 20 H 0.01 0.27 7.96 -51.92 -0.41 -0.14 15 21 H 0.27 6.58 8.31 -40.82 -0.34 6.24 15 22 H 0.07 1.46 6.24 -51.93 -0.32 1.13 15 23 H 0.04 0.76 6.90 -51.93 -0.36 0.40 15 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 28 H 0.04 0.86 7.65 -51.93 -0.40 0.46 15 29 H 0.07 1.35 8.07 -51.93 -0.42 0.93 15 LS Contribution 239.80 15.07 3.61 3.61 Total: -1.00 -25.96 239.80 -6.29 -32.25 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -3.87 Total: -0.40 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -1.24 Total: -5.47 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.22 Total: -44.69 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -25.96 -6.29 -32.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261304637.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.873 kcal (2) G-P(sol) polarization free energy of solvation -25.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds