Wall clock time and date at job start Mon Mar 30 2020 02:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47119 * 2 1 4 4 C 1.47196 * 109.47438 * 120.00537 * 2 1 3 5 5 N 2.60796 * 109.47418 * 120.00649 * 2 1 3 6 6 N 1.46906 * 109.46703 * 240.00741 * 2 1 3 7 7 C 1.47837 * 111.00143 * 54.15396 * 6 2 1 8 8 C 1.55120 * 104.90441 * 146.24044 * 7 6 2 9 9 C 1.55138 * 101.55654 * 323.15801 * 8 7 6 10 10 H 1.08996 * 110.71013 * 276.96301 * 9 8 7 11 11 C 1.50706 * 110.70601 * 153.91018 * 9 8 7 12 12 H 1.07998 * 119.99503 * 243.80614 * 11 9 8 13 13 C 1.37871 * 120.00434 * 63.80078 * 11 9 8 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 9 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47364 * 179.72558 * 15 13 11 17 17 H 1.48508 * 109.46883 * 299.72681 * 15 13 11 18 18 H 1.48497 * 109.46870 * 59.72491 * 15 13 11 19 19 C 1.47441 * 110.99580 * 175.00076 * 6 2 1 20 20 H 1.09002 * 109.47119 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.46991 * 299.99586 * 1 2 3 22 22 H 1.08996 * 109.47323 * 59.99385 * 1 2 3 23 23 H 1.08997 * 110.37787 * 265.19074 * 7 6 2 24 24 H 1.09007 * 110.37367 * 27.42656 * 7 6 2 25 25 H 1.09005 * 111.14695 * 205.05503 * 8 7 6 26 26 H 1.08994 * 110.92271 * 81.17268 * 8 7 6 27 27 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 28 28 H 1.09003 * 109.89183 * 117.33526 * 19 6 2 29 29 H 1.09003 * 109.89305 * 356.14228 * 19 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6940 1.2018 5 7 2.3994 -1.2296 2.1292 6 7 2.0195 -0.6924 -1.1996 7 6 1.4341 -0.1078 -2.4248 8 6 2.5471 -0.2334 -3.4980 9 6 3.8221 0.0367 -2.6565 10 1 3.9901 1.1077 -2.5442 11 6 5.0229 -0.6263 -3.2808 12 1 5.5421 -1.4116 -2.7515 13 6 5.4586 -0.2305 -4.5275 14 7 4.8230 0.7220 -5.1744 15 14 6.9465 -1.0528 -5.3017 16 1 7.2037 -0.4553 -6.6366 17 1 8.1327 -0.8499 -4.4315 18 1 6.6859 -2.5070 -5.4521 19 6 3.4885 -0.6090 -1.2951 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 0.5493 -0.6679 -2.7272 24 1 1.1819 0.9401 -2.2622 25 1 2.4277 0.5184 -4.2782 26 1 2.5656 -1.2365 -3.9240 27 1 4.0502 1.1489 -4.7726 28 1 3.9209 -1.6083 -1.2428 29 1 3.8783 0.0089 -0.4862 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306588810.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:34 Heat of formation + Delta-G solvation = 4.086174 kcal Electronic energy + Delta-G solvation = -12097.583155 eV Core-core repulsion = 10019.607996 eV Total energy + Delta-G solvation = -2077.975160 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.38972 -37.64991 -35.70248 -33.40671 -30.26251 -29.69390 -26.02540 -25.13002 -21.98096 -21.57239 -19.06008 -18.60912 -17.13537 -16.66623 -15.67075 -15.17350 -14.64505 -14.54085 -14.25331 -13.92006 -13.68512 -13.44704 -13.23141 -12.78139 -12.56174 -12.44903 -12.28346 -12.04219 -11.93566 -11.62823 -11.49959 -10.56765 -10.44721 -9.36696 -8.55876 -6.29042 1.54713 1.55293 1.61365 1.69196 1.80937 2.58407 2.83572 3.12610 3.22345 3.94821 3.99408 4.13964 4.26208 4.36122 4.44758 4.76688 4.78196 4.88951 4.95100 5.06746 5.22204 5.31837 5.39275 5.52620 5.92209 6.03063 6.12187 6.24618 6.47622 6.70258 7.48513 8.83599 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.058376 B = 0.009345 C = 0.008348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.534025 B = 2995.407677 C = 3353.324413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.100 0.900 4 C 0.242 3.758 5 N -0.479 5.479 6 N -0.530 5.530 7 C 0.057 3.943 8 C -0.116 4.116 9 C 0.008 3.992 10 H 0.005 0.995 11 C -0.609 4.609 12 H 0.039 0.961 13 C -0.024 4.024 14 N -0.935 5.935 15 Si 1.108 2.892 16 H -0.283 1.283 17 H -0.276 1.276 18 H -0.275 1.275 19 C 0.064 3.936 20 H 0.068 0.932 21 H 0.088 0.912 22 H 0.095 0.905 23 H 0.100 0.900 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.043 0.957 27 H 0.265 0.735 28 H 0.051 0.949 29 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.201 1.102 5.426 10.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.055 3.945 3 H 0.118 0.882 4 C -0.076 4.076 5 N -0.156 5.156 6 N -0.256 5.256 7 C -0.069 4.069 8 C -0.155 4.155 9 C -0.011 4.011 10 H 0.023 0.977 11 C -0.648 4.648 12 H 0.057 0.943 13 C -0.223 4.223 14 N -0.573 5.573 15 Si 0.931 3.069 16 H -0.208 1.208 17 H -0.201 1.201 18 H -0.200 1.200 19 C -0.064 4.064 20 H 0.087 0.913 21 H 0.106 0.894 22 H 0.113 0.887 23 H 0.119 0.881 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.843 -0.220 5.544 9.607 hybrid contribution -0.413 0.953 0.924 1.390 sum -8.256 0.733 6.468 10.514 Atomic orbital electron populations 1.21898 0.88320 1.04238 1.04997 1.19617 0.98638 0.94543 0.81750 0.88235 1.29477 0.91772 0.92391 0.93978 1.81145 1.10180 1.10290 1.14002 1.63681 1.06127 1.53840 1.01962 1.23111 0.97432 0.98917 0.87457 1.22731 0.95396 0.99969 0.97373 1.19976 0.94400 0.94344 0.92403 0.97731 1.22268 1.14767 1.22326 1.05414 0.94298 1.27012 1.04053 0.96018 0.95221 1.70913 1.21118 1.24539 1.40727 0.83023 0.72795 0.75451 0.75607 1.20834 1.20135 1.20035 1.22664 0.87145 0.99437 0.97136 0.91302 0.89354 0.88659 0.88146 0.91263 0.92762 0.93807 0.92336 0.93061 0.94055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.93 71.98 0.64 -1.61 15 2 C 0.17 4.08 2.10 43.11 0.09 4.17 15 3 H 0.10 2.19 8.10 -2.39 -0.02 2.17 15 4 C 0.24 7.25 13.92 89.44 1.25 8.50 15 5 N -0.48 -16.66 18.54 20.00 0.37 -16.28 15 6 N -0.53 -17.06 5.01 -870.58 -4.36 -21.42 15 7 C 0.06 1.72 5.33 86.85 0.46 2.18 15 8 C -0.12 -4.89 5.78 32.05 0.19 -4.70 15 9 C 0.01 0.39 2.46 -10.36 -0.03 0.36 15 10 H 0.00 0.24 8.01 -2.39 -0.02 0.22 15 11 C -0.61 -33.75 8.48 25.60 0.22 -33.54 15 12 H 0.04 2.18 7.55 -2.91 -0.02 2.16 15 13 C -0.02 -1.33 5.35 84.65 0.45 -0.88 15 14 N -0.94 -54.67 13.45 21.45 0.29 -54.38 15 15 Si 1.11 49.80 29.90 68.60 2.05 51.86 15 16 H -0.28 -12.65 7.11 99.48 0.71 -11.95 15 17 H -0.28 -11.72 7.11 99.48 0.71 -11.01 15 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 19 C 0.06 2.60 5.93 86.65 0.51 3.12 15 20 H 0.07 1.22 8.14 -2.39 -0.02 1.20 15 21 H 0.09 1.11 8.14 -2.38 -0.02 1.09 15 22 H 0.09 1.29 6.74 -2.39 -0.02 1.27 15 23 H 0.10 2.53 8.14 -2.39 -0.02 2.51 15 24 H 0.07 1.74 7.32 -2.38 -0.02 1.72 15 25 H 0.05 2.39 6.59 -2.38 -0.02 2.37 15 26 H 0.04 2.01 8.04 -2.39 -0.02 1.99 15 27 H 0.27 15.22 5.43 -92.71 -0.50 14.72 15 28 H 0.05 2.32 7.64 -2.39 -0.02 2.30 15 29 H 0.04 1.60 7.21 -2.39 -0.02 1.59 15 Total: -1.00 -64.78 243.56 3.53 -61.25 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: 1.39 Total: 1.37 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 3.79 Total: -22.40 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -3.70 Total: -92.08 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 2.05 Total: 51.86 kcal Total: -64.78 3.53 -61.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306588810.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.337 kcal (2) G-P(sol) polarization free energy of solvation -64.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds