Wall clock time and date at job start Mon Mar 30 2020 02:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47575 * 2 1 4 4 C 1.47197 * 109.46887 * 239.99880 * 2 1 3 5 5 N 2.60800 * 109.46879 * 239.99893 * 2 1 3 6 6 N 1.46897 * 109.47027 * 120.00181 * 2 1 3 7 7 C 1.47906 * 111.00143 * 183.33487 * 6 2 1 8 8 C 1.53986 * 107.06192 * 145.84316 * 7 6 2 9 9 C 1.54594 * 105.13908 * 358.77547 * 8 7 6 10 10 H 1.08999 * 110.72346 * 96.40490 * 9 8 7 11 11 C 1.50702 * 110.72271 * 219.50725 * 9 8 7 12 12 H 1.07998 * 120.00069 * 116.14821 * 11 9 8 13 13 C 1.37875 * 119.99865 * 296.14602 * 11 9 8 14 14 N 1.31512 * 120.00460 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 119.99910 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47082 * 59.99768 * 15 13 11 17 17 H 1.48499 * 109.47366 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47139 * 300.00092 * 15 13 11 19 19 C 1.48536 * 111.00209 * 300.72945 * 6 2 1 20 20 H 1.08996 * 109.47041 * 185.74365 * 1 2 3 21 21 H 1.09004 * 109.47100 * 305.74029 * 1 2 3 22 22 H 1.09000 * 109.47272 * 65.73663 * 1 2 3 23 23 H 1.09004 * 109.91221 * 26.48569 * 7 6 2 24 24 H 1.09002 * 110.08073 * 265.28795 * 7 6 2 25 25 H 1.09001 * 110.30685 * 239.86123 * 8 7 6 26 26 H 1.09002 * 110.39405 * 117.73813 * 8 7 6 27 27 H 0.96998 * 120.00170 * 179.97438 * 14 13 11 28 28 H 1.08996 * 110.66338 * 81.84679 * 19 6 2 29 29 H 1.08999 * 110.66608 * 318.71455 * 19 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6939 -1.2019 5 7 2.3992 -1.2295 -2.1294 6 7 2.0196 -0.6925 1.1994 7 6 3.4960 -0.6431 1.2745 8 6 3.8697 -0.5522 2.7655 9 6 2.5202 -0.5217 3.5189 10 1 2.2490 -1.5191 3.8651 11 6 2.5760 0.4447 4.6740 12 1 1.9386 1.3165 4.6800 13 6 3.4408 0.2157 5.7231 14 7 4.2174 -0.8456 5.7156 15 14 3.5096 1.4132 7.1552 16 1 2.1745 1.4897 7.8010 17 1 4.5125 0.9443 8.1449 18 1 3.8968 2.7578 6.6580 19 6 1.5290 -0.0293 2.4346 20 1 -0.3633 -1.0225 0.1028 21 1 -0.3633 0.6003 0.8342 22 1 -0.3634 0.4223 -0.9369 23 1 3.8654 0.2350 0.7447 24 1 3.9233 -1.5464 0.8389 25 1 4.4321 0.3611 2.9595 26 1 4.4508 -1.4244 3.0653 27 1 4.8261 -1.0065 6.4536 28 1 0.5138 -0.3511 2.6667 29 1 1.5765 1.0550 2.3339 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306588811.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:37 Heat of formation + Delta-G solvation = 25.195628 kcal Electronic energy + Delta-G solvation = -12032.273398 eV Core-core repulsion = 9955.213613 eV Total energy + Delta-G solvation = -2077.059785 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.73600 -36.16829 -33.67999 -31.91683 -28.87094 -27.78232 -25.08814 -23.12707 -20.44967 -19.52238 -17.44330 -16.31642 -15.65353 -14.66009 -14.45631 -13.96206 -13.32221 -12.81533 -12.70442 -12.36589 -12.07296 -11.92371 -11.72916 -11.20769 -11.07702 -10.95966 -10.72630 -10.56663 -10.29905 -9.73226 -9.31060 -8.83823 -8.43550 -8.00867 -6.05882 -4.10020 2.85779 2.93964 3.29264 3.34944 3.36491 4.07186 4.38587 4.53979 5.15234 5.23829 5.27916 5.58800 5.73837 5.87179 5.92005 6.11425 6.21208 6.30135 6.43215 6.74617 6.99484 7.08321 7.39380 7.45321 7.60743 7.72915 7.80265 7.98216 8.37361 8.92577 9.54754 11.03926 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.069959 B = 0.008753 C = 0.008120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.140478 B = 3198.034023 C = 3447.581513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.163 3.837 3 H 0.081 0.919 4 C 0.228 3.772 5 N -0.444 5.444 6 N -0.513 5.513 7 C 0.030 3.970 8 C -0.103 4.103 9 C 0.053 3.947 10 H 0.040 0.960 11 C -0.519 4.519 12 H 0.057 0.943 13 C 0.065 3.935 14 N -0.887 5.887 15 Si 0.891 3.109 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.278 1.278 19 C 0.044 3.956 20 H 0.072 0.928 21 H 0.077 0.923 22 H 0.062 0.938 23 H 0.032 0.968 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.261 0.739 28 H 0.071 0.929 29 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.968 3.375 -6.402 8.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.051 3.949 3 H 0.099 0.901 4 C -0.091 4.091 5 N -0.121 5.121 6 N -0.240 5.240 7 C -0.098 4.098 8 C -0.142 4.142 9 C 0.034 3.966 10 H 0.058 0.942 11 C -0.557 4.557 12 H 0.075 0.925 13 C -0.138 4.138 14 N -0.524 5.524 15 Si 0.719 3.281 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.083 4.083 20 H 0.091 0.909 21 H 0.096 0.904 22 H 0.081 0.919 23 H 0.050 0.950 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.439 1.940 -7.735 9.127 hybrid contribution 0.398 1.634 1.166 2.046 sum -4.041 3.574 -6.569 8.501 Atomic orbital electron populations 1.21813 0.91485 1.03948 1.02639 1.19346 0.96626 0.94575 0.84343 0.90112 1.29162 0.92725 0.93136 0.94057 1.81125 1.09144 1.09248 1.12589 1.64933 1.08499 1.49947 1.00585 1.23049 0.87075 0.99268 1.00406 1.22357 1.00748 1.01613 0.89488 1.19546 0.88903 0.97261 0.90903 0.94200 1.21021 1.22266 1.08637 1.03809 0.92512 1.24962 0.95481 0.95270 0.98042 1.69958 1.23872 1.26545 1.32065 0.86683 0.77813 0.81366 0.82258 1.20215 1.21353 1.20320 1.23449 1.00165 0.96025 0.88619 0.90903 0.90361 0.91931 0.94993 0.91911 0.92484 0.91930 0.92895 0.91023 0.94010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.84 37.16 0.33 -1.23 15 2 C 0.16 2.26 2.22 -70.50 -0.16 2.11 15 3 H 0.08 1.02 7.98 -51.93 -0.41 0.60 15 4 C 0.23 3.53 14.14 -20.76 -0.29 3.24 15 5 N -0.44 -7.71 18.54 42.15 0.78 -6.93 15 6 N -0.51 -8.92 5.09 -225.87 -1.15 -10.07 15 7 C 0.03 0.55 5.94 -2.76 -0.02 0.53 15 8 C -0.10 -2.31 5.64 -25.38 -0.14 -2.45 15 9 C 0.05 1.25 2.93 -89.91 -0.26 0.98 15 10 H 0.04 1.04 8.14 -51.93 -0.42 0.62 15 11 C -0.52 -13.42 8.41 -34.44 -0.29 -13.71 15 12 H 0.06 1.43 7.78 -52.49 -0.41 1.02 15 13 C 0.06 1.73 5.35 -17.82 -0.10 1.63 15 14 N -0.89 -24.73 12.61 55.43 0.70 -24.03 15 15 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 15 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 19 C 0.04 0.82 4.82 -1.90 -0.01 0.81 15 20 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.08 0.82 7.23 -51.93 -0.38 0.44 15 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 15 23 H 0.03 0.55 7.68 -51.93 -0.40 0.15 15 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 15 25 H 0.06 1.34 7.84 -51.93 -0.41 0.93 15 26 H 0.06 1.50 8.11 -51.93 -0.42 1.08 15 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 28 H 0.07 1.25 7.79 -51.93 -0.40 0.85 15 29 H 0.04 0.75 7.91 -51.93 -0.41 0.34 15 LS Contribution 248.59 15.07 3.75 3.75 Total: -1.00 -27.97 248.59 -5.95 -33.91 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: -4.07 Total: -4.00 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -0.94 Total: -8.09 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.33 Total: -41.03 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -27.97 -5.95 -33.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306588811.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.110 kcal (2) G-P(sol) polarization free energy of solvation -27.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds