Wall clock time and date at job start Mon Mar 30 2020 02:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47575 * 2 1 4 4 C 1.47197 * 109.46887 * 239.99880 * 2 1 3 5 5 N 2.60800 * 109.46879 * 239.99893 * 2 1 3 6 6 N 1.46897 * 109.47027 * 120.00181 * 2 1 3 7 7 C 1.47906 * 111.00143 * 183.33487 * 6 2 1 8 8 C 1.53986 * 107.06192 * 145.84316 * 7 6 2 9 9 C 1.54594 * 105.13908 * 358.77547 * 8 7 6 10 10 H 1.08999 * 110.72346 * 96.40490 * 9 8 7 11 11 C 1.50702 * 110.72271 * 219.50725 * 9 8 7 12 12 H 1.07998 * 120.00069 * 116.14821 * 11 9 8 13 13 C 1.37875 * 119.99865 * 296.14602 * 11 9 8 14 14 N 1.31512 * 120.00460 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 119.99910 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47082 * 59.99768 * 15 13 11 17 17 H 1.48499 * 109.47366 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47139 * 300.00092 * 15 13 11 19 19 C 1.48536 * 111.00209 * 300.72945 * 6 2 1 20 20 H 1.08996 * 109.47041 * 185.74365 * 1 2 3 21 21 H 1.09004 * 109.47100 * 305.74029 * 1 2 3 22 22 H 1.09000 * 109.47272 * 65.73663 * 1 2 3 23 23 H 1.09004 * 109.91221 * 26.48569 * 7 6 2 24 24 H 1.09002 * 110.08073 * 265.28795 * 7 6 2 25 25 H 1.09001 * 110.30685 * 239.86123 * 8 7 6 26 26 H 1.09002 * 110.39405 * 117.73813 * 8 7 6 27 27 H 0.96998 * 120.00170 * 179.97438 * 14 13 11 28 28 H 1.08996 * 110.66338 * 81.84679 * 19 6 2 29 29 H 1.08999 * 110.66608 * 318.71455 * 19 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6939 -1.2019 5 7 2.3992 -1.2295 -2.1294 6 7 2.0196 -0.6925 1.1994 7 6 3.4960 -0.6431 1.2745 8 6 3.8697 -0.5522 2.7655 9 6 2.5202 -0.5217 3.5189 10 1 2.2490 -1.5191 3.8651 11 6 2.5760 0.4447 4.6740 12 1 1.9386 1.3165 4.6800 13 6 3.4408 0.2157 5.7231 14 7 4.2174 -0.8456 5.7156 15 14 3.5096 1.4132 7.1552 16 1 2.1745 1.4897 7.8010 17 1 4.5125 0.9443 8.1449 18 1 3.8968 2.7578 6.6580 19 6 1.5290 -0.0293 2.4346 20 1 -0.3633 -1.0225 0.1028 21 1 -0.3633 0.6003 0.8342 22 1 -0.3634 0.4223 -0.9369 23 1 3.8654 0.2350 0.7447 24 1 3.9233 -1.5464 0.8389 25 1 4.4321 0.3611 2.9595 26 1 4.4508 -1.4244 3.0653 27 1 4.8261 -1.0065 6.4536 28 1 0.5138 -0.3511 2.6667 29 1 1.5765 1.0550 2.3339 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306588811.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:36 Heat of formation + Delta-G solvation = 7.143213 kcal Electronic energy + Delta-G solvation = -12033.056210 eV Core-core repulsion = 9955.213613 eV Total energy + Delta-G solvation = -2077.842597 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.16479 -37.53486 -35.32483 -33.54609 -30.48102 -29.27225 -26.75941 -24.52427 -21.98286 -21.23348 -18.91162 -17.93166 -17.16499 -16.43912 -16.03878 -15.27153 -14.71994 -14.35054 -14.11097 -13.64133 -13.56713 -13.36266 -12.99380 -12.95038 -12.60384 -12.42786 -12.30286 -12.12562 -11.90954 -11.53462 -11.08273 -10.77094 -10.44953 -9.37637 -8.08250 -6.18277 1.47866 1.48363 1.55556 1.61817 1.74325 2.47765 2.89387 3.21079 3.26840 4.05827 4.07938 4.23724 4.39677 4.53405 4.69405 4.83340 4.92351 4.98849 5.13300 5.28116 5.29783 5.39213 5.66531 5.77010 5.88084 6.03256 6.13452 6.42323 6.52733 6.93651 7.50286 9.01206 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.069959 B = 0.008753 C = 0.008120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.140478 B = 3198.034023 C = 3447.581513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.163 3.837 3 H 0.107 0.893 4 C 0.244 3.756 5 N -0.479 5.479 6 N -0.522 5.522 7 C 0.040 3.960 8 C -0.095 4.095 9 C 0.040 3.960 10 H 0.002 0.998 11 C -0.528 4.528 12 H 0.065 0.935 13 C 0.012 3.988 14 N -0.922 5.922 15 Si 0.954 3.046 16 H -0.269 1.269 17 H -0.292 1.292 18 H -0.269 1.269 19 C 0.061 3.939 20 H 0.065 0.935 21 H 0.090 0.910 22 H 0.086 0.914 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.040 0.960 26 H 0.032 0.968 27 H 0.259 0.741 28 H 0.087 0.913 29 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.247 5.027 -7.051 10.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.052 3.948 3 H 0.124 0.876 4 C -0.074 4.074 5 N -0.157 5.157 6 N -0.249 5.249 7 C -0.087 4.087 8 C -0.134 4.134 9 C 0.020 3.980 10 H 0.021 0.979 11 C -0.566 4.566 12 H 0.083 0.917 13 C -0.187 4.187 14 N -0.561 5.561 15 Si 0.779 3.221 16 H -0.194 1.194 17 H -0.218 1.218 18 H -0.194 1.194 19 C -0.065 4.065 20 H 0.084 0.916 21 H 0.108 0.892 22 H 0.105 0.895 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.105 0.895 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.737 3.603 -8.397 10.789 hybrid contribution 0.785 1.093 1.356 1.911 sum -4.952 4.695 -7.041 9.805 Atomic orbital electron populations 1.21846 0.89002 1.04085 1.04550 1.19604 0.98429 0.94946 0.81815 0.87590 1.29429 0.91726 0.92311 0.93892 1.81152 1.10358 1.10299 1.13871 1.64845 1.07364 1.51055 1.01599 1.22862 0.88319 1.00080 0.97472 1.22129 0.99698 0.99298 0.92297 1.19524 0.91080 0.95136 0.92229 0.97942 1.21449 1.21729 1.08988 1.04478 0.91704 1.25762 0.95380 0.96790 1.00754 1.70106 1.24819 1.28429 1.32784 0.85681 0.77834 0.79445 0.79095 1.19399 1.21801 1.19418 1.23202 0.99362 0.96643 0.87306 0.91581 0.89156 0.89479 0.93001 0.92196 0.94105 0.94953 0.93248 0.89499 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.84 71.98 0.64 -1.86 15 2 C 0.16 3.96 2.22 43.11 0.10 4.06 15 3 H 0.11 2.16 7.98 -2.39 -0.02 2.14 15 4 C 0.24 6.95 14.14 89.44 1.26 8.21 15 5 N -0.48 -15.82 18.54 20.01 0.37 -15.45 15 6 N -0.52 -16.98 5.09 -868.51 -4.42 -21.40 15 7 C 0.04 1.46 5.94 86.44 0.51 1.97 15 8 C -0.10 -4.32 5.64 31.47 0.18 -4.15 15 9 C 0.04 1.87 2.93 -10.33 -0.03 1.84 15 10 H 0.00 0.13 8.14 -2.39 -0.02 0.11 15 11 C -0.53 -27.15 8.41 25.60 0.22 -26.93 15 12 H 0.06 3.15 7.78 -2.91 -0.02 3.13 15 13 C 0.01 0.64 5.35 84.65 0.45 1.09 15 14 N -0.92 -52.74 12.61 21.45 0.27 -52.47 15 15 Si 0.95 41.86 29.54 68.60 2.03 43.89 15 16 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 17 H -0.29 -12.91 7.11 99.48 0.71 -12.21 15 18 H -0.27 -11.36 7.11 99.48 0.71 -10.66 15 19 C 0.06 2.15 4.82 86.65 0.42 2.57 15 20 H 0.07 1.33 8.14 -2.39 -0.02 1.31 15 21 H 0.09 1.48 7.23 -2.39 -0.02 1.46 15 22 H 0.09 1.21 8.14 -2.39 -0.02 1.19 15 23 H 0.05 1.66 7.68 -2.38 -0.02 1.64 15 24 H 0.06 2.19 8.14 -2.39 -0.02 2.17 15 25 H 0.04 1.93 7.84 -2.39 -0.02 1.92 15 26 H 0.03 1.61 8.11 -2.39 -0.02 1.59 15 27 H 0.26 14.24 8.31 -92.71 -0.77 13.47 15 28 H 0.09 2.80 7.79 -2.39 -0.02 2.78 15 29 H 0.06 1.82 7.91 -2.39 -0.02 1.80 15 Total: -1.00 -60.57 248.59 3.11 -57.46 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: 1.12 Total: 1.17 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 3.74 Total: -13.19 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -3.78 Total: -89.32 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -60.57 3.11 -57.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306588811.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.604 kcal (2) G-P(sol) polarization free energy of solvation -60.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds