Wall clock time and date at job start Mon Mar 30 2020 01:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34848 * 125.89174 * 2 1 4 4 C 1.40895 * 107.41714 * 179.97438 * 3 2 1 5 5 C 1.34844 * 107.41841 * 0.02562 * 4 3 2 6 6 C 1.50694 * 125.89577 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.47289 * 94.97423 * 6 5 4 8 8 C 1.36933 * 120.00335 * 180.02562 * 7 6 5 9 9 H 1.07995 * 120.00151 * 359.97438 * 8 7 6 10 10 C 1.38815 * 119.99913 * 180.02562 * 8 7 6 11 11 N 1.31621 * 119.99608 * 179.97438 * 10 8 7 12 12 Si 1.86794 * 120.00265 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47163 * 90.00147 * 12 10 8 14 14 H 1.48495 * 109.47358 * 210.00172 * 12 10 8 15 15 H 1.48497 * 109.47241 * 330.00354 * 12 10 8 16 16 N 1.36345 * 125.88970 * 179.97438 * 2 1 3 17 17 C 1.46500 * 125.63310 * 0.05158 * 16 2 1 18 18 H 1.08997 * 109.47161 * 90.01815 * 1 2 3 19 19 H 1.08997 * 109.47276 * 210.02513 * 1 2 3 20 20 H 1.09011 * 109.46882 * 330.02389 * 1 2 3 21 21 H 1.07999 * 126.29387 * 0.23472 * 3 2 1 22 22 H 1.07998 * 126.29072 * 179.97438 * 4 3 2 23 23 H 1.08999 * 109.47974 * 214.97541 * 6 5 4 24 24 H 1.09002 * 109.47088 * 334.97886 * 6 5 4 25 25 H 0.97008 * 119.99778 * 0.02562 * 7 6 5 26 26 H 0.97006 * 119.99643 * 179.97438 * 11 10 8 27 27 H 1.08997 * 109.47501 * 269.97463 * 17 16 2 28 28 H 1.09004 * 109.47331 * 29.98008 * 17 16 2 29 29 H 1.09002 * 109.46732 * 149.97633 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2976 1.0924 0.0000 4 6 3.6339 0.6460 0.0006 5 6 3.6091 -0.7022 0.0004 6 6 4.8133 -1.6081 0.0014 7 7 5.1303 -1.9976 1.3776 8 6 6.1932 -2.8239 1.6279 9 1 6.7976 -3.1888 0.8107 10 6 6.4931 -3.1933 2.9319 11 7 7.5145 -3.9880 3.1723 12 14 5.4473 -2.5628 4.3454 13 1 4.3320 -3.5104 4.5970 14 1 6.2837 -2.4473 5.5669 15 1 4.8947 -1.2295 3.9959 16 7 2.3063 -1.1046 0.0005 17 6 1.8420 -2.4941 0.0000 18 1 -0.3633 -0.0003 -1.0276 19 1 -0.3633 -0.8897 0.5142 20 1 -0.3633 0.8903 0.5135 21 1 1.9672 2.1206 0.0036 22 1 4.5160 1.2690 0.0004 23 1 4.5982 -2.4994 -0.5880 24 1 5.6639 -1.0823 -0.4324 25 1 4.5872 -1.6702 2.1117 26 1 7.7243 -4.2458 4.0836 27 1 1.7265 -2.8390 1.0275 28 1 0.8829 -2.5566 -0.5142 29 1 2.5712 -3.1206 -0.5137 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307627383.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:11 Heat of formation + Delta-G solvation = 37.011815 kcal Electronic energy + Delta-G solvation = -11972.328523 eV Core-core repulsion = 9895.781126 eV Total energy + Delta-G solvation = -2076.547397 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.19119 -36.80419 -33.86416 -33.71550 -32.24352 -29.00355 -27.19038 -25.56331 -23.70371 -21.32516 -20.18293 -19.50870 -17.19414 -16.82456 -16.19293 -15.57964 -15.15508 -14.90207 -14.37030 -13.96054 -13.91806 -13.72445 -13.41305 -12.99060 -12.89360 -12.74189 -12.67633 -12.34690 -12.14049 -11.86271 -11.07181 -9.48656 -9.37677 -8.79414 -8.07277 -5.41249 1.25183 1.33305 1.36532 1.44400 2.06870 2.10732 2.43566 3.24139 3.78960 3.93006 4.00968 4.13969 4.35766 4.40764 4.57384 4.63902 4.77680 4.83937 4.85282 4.95330 5.12658 5.37685 5.52908 5.69650 6.15109 6.18148 6.35063 6.56163 7.00791 7.75572 7.97027 9.14037 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.048364 B = 0.009829 C = 0.009530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.800905 B = 2848.158301 C = 2937.507646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.010 3.990 3 C -0.221 4.221 4 C -0.202 4.202 5 C -0.011 4.011 6 C 0.225 3.775 7 N -0.752 5.752 8 C -0.237 4.237 9 H 0.063 0.937 10 C -0.055 4.055 11 N -0.979 5.979 12 Si 0.952 3.048 13 H -0.275 1.275 14 H -0.291 1.291 15 H -0.264 1.264 16 N -0.445 5.445 17 C 0.067 3.933 18 H 0.084 0.916 19 H 0.071 0.929 20 H 0.091 0.909 21 H 0.152 0.848 22 H 0.132 0.868 23 H 0.035 0.965 24 H 0.045 0.955 25 H 0.363 0.637 26 H 0.260 0.740 27 H 0.068 0.932 28 H 0.112 0.888 29 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.740 7.579 -6.470 19.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.103 4.103 3 C -0.245 4.245 4 C -0.227 4.227 5 C -0.123 4.123 6 C 0.099 3.901 7 N -0.398 5.398 8 C -0.368 4.368 9 H 0.081 0.919 10 C -0.247 4.247 11 N -0.630 5.630 12 Si 0.779 3.221 13 H -0.201 1.201 14 H -0.217 1.217 15 H -0.189 1.189 16 N -0.121 5.121 17 C -0.074 4.074 18 H 0.103 0.897 19 H 0.089 0.911 20 H 0.110 0.890 21 H 0.169 0.831 22 H 0.150 0.850 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.196 0.804 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.131 0.869 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.677 7.066 -6.546 19.259 hybrid contribution 0.238 0.057 1.015 1.044 sum -16.439 7.123 -5.531 18.750 Atomic orbital electron populations 1.20381 0.85347 1.04088 1.03585 1.21015 0.95118 0.85354 1.08776 1.20906 0.92071 0.98619 1.12877 1.20920 0.98323 0.93063 1.10426 1.20461 0.85044 0.94784 1.11997 1.19076 0.91070 0.93960 0.85979 1.42770 1.34797 1.58513 1.03671 1.19057 1.04654 1.19687 0.93357 0.91937 1.25400 0.99436 1.00240 0.99639 1.69866 1.31662 1.41080 1.20364 0.85457 0.78476 0.78807 0.79334 1.20145 1.21732 1.18927 1.44082 1.04987 1.07061 1.55957 1.22145 1.02414 0.79208 1.03606 0.89707 0.91052 0.89020 0.83052 0.85015 0.94712 0.93727 0.80386 0.93135 0.91353 0.86931 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 9.88 71.24 0.70 -0.59 15 2 C 0.01 0.26 6.89 41.08 0.28 0.55 15 3 C -0.22 -6.48 10.77 22.14 0.24 -6.24 15 4 C -0.20 -7.00 10.76 22.14 0.24 -6.76 15 5 C -0.01 -0.41 6.26 41.08 0.26 -0.16 15 6 C 0.23 9.35 6.41 85.63 0.55 9.90 15 7 N -0.75 -37.17 5.40 -347.19 -1.87 -39.04 15 8 C -0.24 -13.84 10.47 84.03 0.88 -12.96 15 9 H 0.06 3.94 8.06 -2.91 -0.02 3.92 15 10 C -0.06 -3.31 5.50 84.86 0.47 -2.84 15 11 N -0.98 -63.24 13.97 21.65 0.30 -62.94 15 12 Si 0.95 46.96 27.74 68.60 1.90 48.87 15 13 H -0.28 -13.07 7.11 99.48 0.71 -12.36 15 14 H -0.29 -14.34 7.11 99.48 0.71 -13.63 15 15 H -0.26 -12.40 6.52 99.48 0.65 -11.75 15 16 N -0.44 -13.67 3.15 -518.69 -1.63 -15.31 15 17 C 0.07 1.65 10.54 127.77 1.35 3.00 15 18 H 0.08 1.16 8.14 -2.39 -0.02 1.14 15 19 H 0.07 1.07 7.70 -2.39 -0.02 1.05 15 20 H 0.09 1.29 8.14 -2.38 -0.02 1.27 15 21 H 0.15 3.62 8.06 -2.91 -0.02 3.60 15 22 H 0.13 4.41 8.06 -2.91 -0.02 4.39 15 23 H 0.04 1.41 7.22 -2.39 -0.02 1.39 15 24 H 0.04 1.88 8.14 -2.39 -0.02 1.86 15 25 H 0.36 17.81 5.52 -92.70 -0.51 17.29 15 26 H 0.26 15.92 8.31 -92.70 -0.77 15.14 15 27 H 0.07 1.73 8.14 -2.39 -0.02 1.71 15 28 H 0.11 1.89 7.63 -2.38 -0.02 1.87 15 29 H 0.08 2.07 7.12 -2.39 -0.02 2.05 15 Total: -1.00 -69.82 248.70 4.22 -65.60 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.56 Total: 18.94 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 4.96 Total: -16.12 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -3.20 Total: -117.29 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.90 Total: 48.87 kcal Total: -69.82 4.22 -65.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307627383.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.612 kcal (2) G-P(sol) polarization free energy of solvation -69.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds