Wall clock time and date at job start Mon Mar 30 2020 01:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47086 * 239.99991 * 3 2 1 5 5 H 1.48503 * 109.47155 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46879 * 119.99935 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00335 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47303 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46972 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46969 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.47035 * 179.97438 * 12 11 10 14 14 C 1.34944 * 126.03372 * 125.00124 * 13 12 11 15 15 C 1.35317 * 107.74658 * 179.97438 * 14 13 12 16 16 C 1.39871 * 107.91935 * 0.02562 * 15 14 13 17 17 N 1.30845 * 108.20108 * 359.74200 * 16 15 14 18 18 H 0.97005 * 120.00032 * 359.97438 * 1 2 3 19 19 H 1.08996 * 109.47197 * 60.00130 * 9 7 2 20 20 H 1.09000 * 109.46978 * 300.00492 * 9 7 2 21 21 H 1.08992 * 109.46974 * 59.99787 * 10 9 7 22 22 H 1.08996 * 109.46550 * 299.99681 * 10 9 7 23 23 H 1.09004 * 109.47298 * 59.99824 * 11 10 9 24 24 H 1.09004 * 109.47552 * 299.99695 * 11 10 9 25 25 H 1.09004 * 109.46930 * 59.99996 * 12 11 10 26 26 H 1.09000 * 109.47312 * 299.99939 * 12 11 10 27 27 H 1.08001 * 126.12891 * 0.02562 * 14 13 12 28 28 H 1.08002 * 126.04160 * 179.97438 * 15 14 13 29 29 H 1.07995 * 125.90070 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0018 13 7 1.7419 -7.4188 -0.0018 14 6 1.8867 -8.4190 -0.8960 15 6 1.0339 -9.4102 -0.5477 16 6 0.3439 -9.0015 0.5982 17 7 0.7712 -7.8099 0.9293 18 1 -0.4850 0.8401 0.0004 19 1 0.6240 -2.5567 -0.8903 20 1 0.6246 -2.5570 0.8896 21 1 2.8719 -3.6043 0.8894 22 1 2.8718 -3.6043 -0.8905 23 1 0.8538 -5.0445 -0.8914 24 1 0.8533 -5.0451 0.8886 25 1 3.1012 -6.0927 0.8882 26 1 3.1011 -6.0919 -0.8918 27 1 2.5628 -8.4273 -1.7382 28 1 0.9076 -10.3505 -1.0639 29 1 -0.4087 -9.5724 1.1216 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385248154.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:28 Heat of formation + Delta-G solvation = 54.355494 kcal Electronic energy + Delta-G solvation = -11352.036557 eV Core-core repulsion = 9276.241239 eV Total energy + Delta-G solvation = -2075.795318 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.97692 -35.55502 -33.20545 -31.52923 -29.97481 -28.21837 -25.05435 -22.45148 -21.02865 -20.34944 -20.04920 -17.00318 -16.24712 -15.38926 -14.53892 -14.42900 -14.09944 -13.55818 -12.79613 -12.65004 -12.37977 -11.91389 -11.70238 -11.07026 -10.75056 -10.63159 -10.56522 -10.39761 -9.71445 -9.48715 -9.24924 -9.07280 -8.46788 -8.34725 -5.99496 -4.02517 2.02991 2.68030 2.93528 3.32965 3.37446 3.39632 4.45284 4.65441 4.88681 5.16917 5.27057 5.35930 5.49112 5.59196 5.80446 5.97485 6.05617 6.06614 6.37917 6.66822 6.76253 6.85564 7.05229 7.18476 7.67337 7.81525 7.83433 8.00355 8.41908 9.04586 9.61481 11.11803 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.102620 B = 0.005552 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 272.787111 B = 5041.639940 C = 5187.656259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.108 4.108 11 C -0.128 4.128 12 C 0.129 3.871 13 N -0.363 5.363 14 C 0.050 3.950 15 C -0.284 4.284 16 C 0.034 3.966 17 N -0.291 5.291 18 H 0.261 0.739 19 H 0.015 0.985 20 H 0.016 0.984 21 H 0.051 0.949 22 H 0.049 0.951 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.171 0.829 28 H 0.143 0.857 29 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.022 -15.325 -1.807 15.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.166 4.166 12 C 0.009 3.991 13 N -0.145 5.145 14 C -0.098 4.098 15 C -0.314 4.314 16 C -0.152 4.152 17 N -0.113 5.113 18 H 0.071 0.929 19 H 0.034 0.966 20 H 0.035 0.965 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.112 0.888 27 H 0.188 0.812 28 H 0.161 0.839 29 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.852 -14.093 -0.979 14.643 hybrid contribution 0.495 0.226 -0.678 0.869 sum 4.346 -13.867 -1.657 14.626 Atomic orbital electron populations 1.69960 1.06080 1.26727 1.50678 1.25039 0.94853 0.99283 0.95328 0.86650 0.79573 0.83129 0.78594 1.20254 1.21274 1.20226 1.21223 0.92979 0.91127 1.50802 0.92730 1.19076 0.93962 0.91172 0.97331 1.21598 0.99205 0.93375 1.00430 1.21957 0.97997 0.93527 1.03157 1.22023 0.94116 0.79512 1.03456 1.49000 1.30628 1.14558 1.20346 1.22590 1.01369 0.89415 0.96396 1.21457 1.04761 1.02453 1.02693 1.23861 1.00537 0.93685 0.97085 1.77395 1.05492 1.14694 1.13677 0.92921 0.96639 0.96512 0.93044 0.93221 0.92015 0.90908 0.89877 0.88839 0.81217 0.83933 0.80376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.62 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 15 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 15 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 15 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 15 10 C -0.11 -2.17 5.15 -26.73 -0.14 -2.31 15 11 C -0.13 -2.23 5.40 -26.73 -0.14 -2.38 15 12 C 0.13 1.79 6.51 -4.04 -0.03 1.77 15 13 N -0.36 -5.33 3.68 -61.36 -0.23 -5.56 15 14 C 0.05 0.59 11.45 -17.22 -0.20 0.40 15 15 C -0.28 -3.31 10.80 -40.01 -0.43 -3.74 15 16 C 0.03 0.44 12.03 -17.36 -0.21 0.24 15 17 N -0.29 -4.71 12.42 30.63 0.38 -4.33 15 18 H 0.26 7.53 8.31 -40.82 -0.34 7.19 15 19 H 0.02 0.43 8.14 -51.93 -0.42 0.00 15 20 H 0.02 0.47 8.14 -51.93 -0.42 0.04 15 21 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 15 24 H 0.07 1.39 8.14 -51.93 -0.42 0.97 15 25 H 0.08 1.10 8.14 -51.93 -0.42 0.68 15 26 H 0.09 1.05 8.07 -51.93 -0.42 0.63 15 27 H 0.17 1.42 8.06 -52.49 -0.42 0.99 15 28 H 0.14 1.27 8.06 -52.49 -0.42 0.85 15 29 H 0.18 1.73 8.06 -52.49 -0.42 1.31 15 LS Contribution 256.42 15.07 3.86 3.86 Total: -1.00 -32.49 256.42 -6.15 -38.64 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -4.19 Total: -3.43 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -1.70 Total: -19.34 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.89 Total: -36.52 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.49 -6.15 -38.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385248154.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.994 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds