Wall clock time and date at job start Mon Mar 30 2020 01:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47086 * 239.99991 * 3 2 1 5 5 H 1.48503 * 109.47155 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46879 * 119.99935 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00335 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47303 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46972 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46969 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.47035 * 179.97438 * 12 11 10 14 14 C 1.34944 * 126.03372 * 125.00124 * 13 12 11 15 15 C 1.35317 * 107.74658 * 179.97438 * 14 13 12 16 16 C 1.39871 * 107.91935 * 0.02562 * 15 14 13 17 17 N 1.30845 * 108.20108 * 359.74200 * 16 15 14 18 18 H 0.97005 * 120.00032 * 359.97438 * 1 2 3 19 19 H 1.08996 * 109.47197 * 60.00130 * 9 7 2 20 20 H 1.09000 * 109.46978 * 300.00492 * 9 7 2 21 21 H 1.08992 * 109.46974 * 59.99787 * 10 9 7 22 22 H 1.08996 * 109.46550 * 299.99681 * 10 9 7 23 23 H 1.09004 * 109.47298 * 59.99824 * 11 10 9 24 24 H 1.09004 * 109.47552 * 299.99695 * 11 10 9 25 25 H 1.09004 * 109.46930 * 59.99996 * 12 11 10 26 26 H 1.09000 * 109.47312 * 299.99939 * 12 11 10 27 27 H 1.08001 * 126.12891 * 0.02562 * 14 13 12 28 28 H 1.08002 * 126.04160 * 179.97438 * 15 14 13 29 29 H 1.07995 * 125.90070 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0018 13 7 1.7419 -7.4188 -0.0018 14 6 1.8867 -8.4190 -0.8960 15 6 1.0339 -9.4102 -0.5477 16 6 0.3439 -9.0015 0.5982 17 7 0.7712 -7.8099 0.9293 18 1 -0.4850 0.8401 0.0004 19 1 0.6240 -2.5567 -0.8903 20 1 0.6246 -2.5570 0.8896 21 1 2.8719 -3.6043 0.8894 22 1 2.8718 -3.6043 -0.8905 23 1 0.8538 -5.0445 -0.8914 24 1 0.8533 -5.0451 0.8886 25 1 3.1012 -6.0927 0.8882 26 1 3.1011 -6.0919 -0.8918 27 1 2.5628 -8.4273 -1.7382 28 1 0.9076 -10.3505 -1.0639 29 1 -0.4087 -9.5724 1.1216 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385248154.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:28 Heat of formation + Delta-G solvation = 34.048590 kcal Electronic energy + Delta-G solvation = -11352.917131 eV Core-core repulsion = 9276.241239 eV Total energy + Delta-G solvation = -2076.675892 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.94887 -37.08827 -35.05086 -33.12736 -31.02111 -29.79555 -26.74510 -24.07758 -22.15730 -21.69568 -21.33410 -18.46154 -17.98123 -16.65727 -16.52362 -15.71495 -15.19944 -14.67649 -14.45150 -13.96584 -13.67868 -13.56818 -13.31181 -12.83739 -12.42108 -12.36144 -12.28646 -11.57481 -11.43264 -11.35518 -11.18327 -10.57044 -10.33893 -9.45087 -8.21299 -6.33676 1.07118 1.39316 1.43045 1.50942 1.70884 2.01777 2.40194 3.11630 3.62876 3.95865 4.09880 4.19123 4.33672 4.44537 4.61247 4.72197 4.84090 4.93520 5.07417 5.19822 5.23282 5.25089 5.50837 5.71593 5.82232 5.83817 6.21619 6.22779 6.84248 6.85611 7.36213 8.90688 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.102620 B = 0.005552 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 272.787111 B = 5041.639940 C = 5187.656259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.021 3.979 10 C -0.093 4.093 11 C -0.115 4.115 12 C 0.137 3.863 13 N -0.381 5.381 14 C 0.050 3.950 15 C -0.288 4.288 16 C 0.030 3.970 17 N -0.349 5.349 18 H 0.263 0.737 19 H -0.012 1.012 20 H -0.017 1.017 21 H 0.059 0.941 22 H 0.067 0.933 23 H 0.050 0.950 24 H 0.045 0.955 25 H 0.088 0.912 26 H 0.128 0.872 27 H 0.208 0.792 28 H 0.172 0.828 29 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.914 -16.031 -2.687 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.084 0.916 9 C -0.016 4.016 10 C -0.132 4.132 11 C -0.153 4.153 12 C 0.016 3.984 13 N -0.164 5.164 14 C -0.096 4.096 15 C -0.317 4.317 16 C -0.156 4.156 17 N -0.171 5.171 18 H 0.072 0.928 19 H 0.006 0.994 20 H 0.001 0.999 21 H 0.077 0.923 22 H 0.086 0.914 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.107 0.893 26 H 0.146 0.854 27 H 0.225 0.775 28 H 0.189 0.811 29 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 5.754 -14.825 -1.860 16.011 hybrid contribution -0.161 0.368 -0.417 0.579 sum 5.593 -14.456 -2.277 15.667 Atomic orbital electron populations 1.70117 1.08046 1.27884 1.51698 1.26078 0.95782 1.03716 0.94687 0.85443 0.78196 0.77714 0.79354 1.18799 1.21025 1.19041 1.21721 0.93781 0.92226 1.50550 0.91559 1.19020 0.94578 0.93602 0.94387 1.21371 0.97928 0.92236 1.01617 1.21702 0.98224 0.94114 1.01305 1.21918 0.92938 0.78042 1.05474 1.49036 1.31070 1.15228 1.21041 1.23309 1.01450 0.88430 0.96414 1.21886 1.04100 1.03560 1.02183 1.24440 1.00538 0.92988 0.97599 1.77343 1.07447 1.16580 1.15763 0.92794 0.99387 0.99854 0.92253 0.91383 0.93143 0.93578 0.89346 0.85365 0.77481 0.81087 0.78052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.61 13.29 21.45 0.28 -58.32 15 2 C -0.01 -0.31 5.46 84.65 0.46 0.16 15 3 Si 0.97 44.55 29.54 68.60 2.03 46.57 15 4 H -0.26 -11.46 7.11 99.48 0.71 -10.76 15 5 H -0.28 -12.87 7.11 99.48 0.71 -12.17 15 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 15 7 C -0.54 -31.38 9.11 25.60 0.23 -31.15 15 8 H 0.07 3.57 7.74 -2.91 -0.02 3.55 15 9 C 0.02 1.15 4.97 29.85 0.15 1.30 15 10 C -0.09 -3.73 5.15 30.59 0.16 -3.57 15 11 C -0.12 -4.03 5.40 30.59 0.17 -3.86 15 12 C 0.14 3.55 6.51 86.38 0.56 4.11 15 13 N -0.38 -10.64 3.68 -348.04 -1.28 -11.92 15 14 C 0.05 1.06 11.45 83.54 0.96 2.02 15 15 C -0.29 -5.97 10.80 21.99 0.24 -5.73 15 16 C 0.03 0.74 12.03 85.24 1.03 1.76 15 17 N -0.35 -11.24 12.42 -57.02 -0.71 -11.95 15 18 H 0.26 15.46 8.31 -92.70 -0.77 14.69 15 19 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 15 20 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 15 21 H 0.06 2.27 8.14 -2.39 -0.02 2.25 15 22 H 0.07 2.47 8.14 -2.39 -0.02 2.45 15 23 H 0.05 1.85 8.14 -2.38 -0.02 1.83 15 24 H 0.05 1.83 8.14 -2.39 -0.02 1.81 15 25 H 0.09 2.19 8.14 -2.38 -0.02 2.17 15 26 H 0.13 2.42 8.07 -2.39 -0.02 2.40 15 27 H 0.21 2.55 8.06 -2.91 -0.02 2.53 15 28 H 0.17 2.43 8.06 -2.91 -0.02 2.41 15 29 H 0.20 3.65 8.06 -2.91 -0.02 3.63 15 Total: -1.00 -71.90 256.42 5.37 -66.53 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: 1.10 Total: 4.07 kcal Atomic # 6 Polarization: -38.92 SS G_CDS: 3.95 Total: -34.97 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -1.70 Total: -82.19 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -71.90 5.37 -66.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385248154.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.574 kcal (2) G-P(sol) polarization free energy of solvation -71.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds