Wall clock time and date at job start Mon Mar 30 2020 02:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46492 * 109.47009 * 2 1 4 4 C 1.36938 * 120.00109 * 85.12937 * 3 2 1 5 5 H 1.07996 * 119.99915 * 325.28736 * 4 3 2 6 6 C 1.38817 * 119.99869 * 145.28478 * 4 3 2 7 7 N 1.31614 * 120.00275 * 337.65706 * 6 4 3 8 8 Si 1.86803 * 119.99691 * 157.66055 * 6 4 3 9 9 H 1.48499 * 109.47042 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47133 * 119.99875 * 8 6 4 11 11 H 1.48510 * 109.46619 * 240.00024 * 8 6 4 12 12 C 1.46507 * 119.99991 * 265.12988 * 3 2 1 13 13 C 1.50696 * 109.46931 * 90.00225 * 12 3 2 14 14 C 1.34852 * 125.89226 * 95.00482 * 13 12 3 15 15 C 1.40884 * 107.41756 * 179.97438 * 14 13 12 16 16 C 1.34851 * 107.41708 * 359.97438 * 15 14 13 17 17 N 1.36339 * 125.88915 * 274.68315 * 13 12 3 18 18 H 0.97006 * 125.63760 * 0.02562 * 17 13 12 19 19 H 1.08999 * 109.47047 * 300.00103 * 1 2 3 20 20 H 1.09001 * 109.46536 * 60.00231 * 1 2 3 21 21 H 1.08995 * 109.47029 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47047 * 239.99897 * 2 1 3 23 23 H 1.08995 * 109.46703 * 120.00191 * 2 1 3 24 24 H 0.97001 * 120.00186 * 180.02562 * 7 6 4 25 25 H 1.09006 * 109.46708 * 210.00458 * 12 3 2 26 26 H 1.09004 * 109.46722 * 329.99859 * 12 3 2 27 27 H 1.08004 * 126.28866 * 0.02562 * 14 13 12 28 28 H 1.08005 * 126.29434 * 179.97438 * 15 14 13 29 29 H 1.08004 * 125.88850 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1517 2.0603 1.1816 5 1 1.4512 1.8881 1.9854 6 6 3.1872 2.9700 1.3463 7 7 4.2671 2.8801 0.5994 8 14 3.0479 4.3216 2.6282 9 1 1.7445 4.2055 3.3303 10 1 4.1534 4.1880 3.6105 11 1 3.1347 5.6462 1.9622 12 6 2.3641 2.0359 -1.2642 13 6 1.1479 2.7323 -1.8182 14 6 0.8316 4.0312 -1.6415 15 6 -0.3780 4.2673 -2.3242 16 6 -0.7544 3.1038 -2.8926 17 7 0.1808 2.1592 -2.5897 18 1 0.1605 1.2320 -2.8742 19 1 -0.3633 0.5138 0.8900 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 4.9909 3.5156 0.7147 25 1 3.1539 2.7668 -1.0907 26 1 2.7113 1.2883 -1.9775 27 1 1.4013 4.7572 -1.0805 28 1 -0.9066 5.2074 -2.3818 29 1 -1.6416 2.9482 -3.4885 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388390556.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:58 Heat of formation + Delta-G solvation = 63.134305 kcal Electronic energy + Delta-G solvation = -12437.933943 eV Core-core repulsion = 10362.519302 eV Total energy + Delta-G solvation = -2075.414641 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.19348 -35.79137 -31.88974 -30.14289 -30.02487 -27.95937 -25.03472 -23.26226 -20.50157 -19.83756 -19.21595 -17.14154 -16.13818 -14.81187 -13.97144 -13.72477 -13.24235 -12.90968 -12.76231 -12.37476 -12.02334 -11.63049 -11.43292 -11.11879 -10.85516 -10.72188 -10.43736 -10.09608 -9.91186 -9.82250 -8.47416 -8.03756 -7.15871 -6.63057 -5.79231 -3.32614 3.09395 3.39939 3.48548 3.52514 3.87737 4.13195 4.53324 5.35024 5.60330 5.73591 5.97239 6.09891 6.25057 6.29505 6.37004 6.42895 6.54177 6.66969 6.85853 7.05867 7.11217 7.20689 7.55727 7.84296 7.90561 8.06437 8.38226 8.54605 9.18191 9.81765 10.37106 11.22746 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.032277 B = 0.015305 C = 0.012316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.285856 B = 1829.031775 C = 2272.882875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.140 3.860 3 N -0.577 5.577 4 C -0.250 4.250 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.291 1.291 11 H -0.286 1.286 12 C 0.197 3.803 13 C 0.042 3.958 14 C -0.203 4.203 15 C -0.203 4.203 16 C -0.049 4.049 17 N -0.560 5.560 18 H 0.402 0.598 19 H 0.050 0.950 20 H 0.042 0.958 21 H 0.035 0.965 22 H 0.032 0.968 23 H 0.047 0.953 24 H 0.255 0.745 25 H 0.122 0.878 26 H 0.028 0.972 27 H 0.125 0.875 28 H 0.121 0.879 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.177 -1.899 -5.331 8.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 N -0.297 5.297 4 C -0.380 4.380 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.218 1.218 11 H -0.212 1.212 12 C 0.070 3.930 13 C -0.073 4.073 14 C -0.228 4.228 15 C -0.229 4.229 16 C -0.179 4.179 17 N -0.156 5.156 18 H 0.237 0.763 19 H 0.069 0.931 20 H 0.061 0.939 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.139 0.861 26 H 0.047 0.953 27 H 0.143 0.857 28 H 0.139 0.861 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.001 -1.963 -5.343 8.271 hybrid contribution -0.360 0.463 0.501 0.772 sum -6.361 -1.500 -4.842 8.134 Atomic orbital electron populations 1.22373 1.00159 0.98734 1.01529 1.20872 0.91695 0.87232 0.98833 1.43802 1.75736 1.07949 1.02182 1.19013 1.07008 1.19284 0.92671 0.92221 1.25056 0.94150 1.01253 0.98336 1.69938 1.04867 1.36349 1.42147 0.86330 0.77577 0.82462 0.81077 1.20128 1.21758 1.21239 1.19777 0.91241 0.96792 0.85232 1.22232 0.94936 0.93898 0.96239 1.20593 0.99216 0.95906 1.07044 1.20782 0.99466 0.97250 1.05409 1.21501 0.97246 0.90012 1.09106 1.42113 1.20146 1.10816 1.42539 0.76251 0.93105 0.93856 0.94643 0.94976 0.93499 0.93484 0.86095 0.95338 0.85722 0.86114 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 10.21 37.16 0.38 -2.75 15 2 C 0.14 2.94 6.44 -4.04 -0.03 2.92 15 3 N -0.58 -14.29 2.44 -174.60 -0.43 -14.71 15 4 C -0.25 -6.86 9.48 -15.06 -0.14 -7.00 15 5 H 0.06 1.66 7.92 -52.49 -0.42 1.25 15 6 C 0.01 0.32 4.96 -17.43 -0.09 0.23 15 7 N -0.89 -25.27 11.32 55.49 0.63 -24.64 15 8 Si 0.90 21.83 29.61 -169.99 -5.03 16.80 15 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 15 12 C 0.20 4.65 5.87 -5.19 -0.03 4.62 15 13 C 0.04 0.91 6.63 -81.79 -0.54 0.37 15 14 C -0.20 -4.49 10.76 -39.78 -0.43 -4.92 15 15 C -0.20 -3.86 10.86 -39.78 -0.43 -4.30 15 16 C -0.05 -0.83 11.94 -16.75 -0.20 -1.03 15 17 N -0.56 -10.00 4.98 -9.12 -0.05 -10.05 15 18 H 0.40 6.10 8.49 -40.82 -0.35 5.75 15 19 H 0.05 1.03 8.14 -51.93 -0.42 0.61 15 20 H 0.04 0.79 6.34 -51.93 -0.33 0.46 15 21 H 0.03 0.55 8.14 -51.93 -0.42 0.13 15 22 H 0.03 0.62 7.84 -51.93 -0.41 0.21 15 23 H 0.05 1.01 8.08 -51.93 -0.42 0.59 15 24 H 0.26 6.98 8.31 -40.82 -0.34 6.64 15 25 H 0.12 3.23 5.34 -51.93 -0.28 2.96 15 26 H 0.03 0.62 7.86 -51.93 -0.41 0.22 15 27 H 0.12 2.89 8.06 -52.48 -0.42 2.46 15 28 H 0.12 2.01 8.06 -52.48 -0.42 1.59 15 29 H 0.15 1.95 8.06 -52.48 -0.42 1.53 15 LS Contribution 247.46 15.07 3.73 3.73 Total: -1.00 -29.40 247.46 -6.51 -35.90 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -3.85 Total: 4.83 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -1.51 Total: -11.86 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 0.16 Total: -49.40 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.40 -6.51 -35.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388390556.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.038 kcal (2) G-P(sol) polarization free energy of solvation -29.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds