Wall clock time and date at job start Mon Mar 30 2020 02:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46492 * 109.47009 * 2 1 4 4 C 1.36938 * 120.00109 * 85.12937 * 3 2 1 5 5 H 1.07996 * 119.99915 * 325.28736 * 4 3 2 6 6 C 1.38817 * 119.99869 * 145.28478 * 4 3 2 7 7 N 1.31614 * 120.00275 * 337.65706 * 6 4 3 8 8 Si 1.86803 * 119.99691 * 157.66055 * 6 4 3 9 9 H 1.48499 * 109.47042 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47133 * 119.99875 * 8 6 4 11 11 H 1.48510 * 109.46619 * 240.00024 * 8 6 4 12 12 C 1.46507 * 119.99991 * 265.12988 * 3 2 1 13 13 C 1.50696 * 109.46931 * 90.00225 * 12 3 2 14 14 C 1.34852 * 125.89226 * 95.00482 * 13 12 3 15 15 C 1.40884 * 107.41756 * 179.97438 * 14 13 12 16 16 C 1.34851 * 107.41708 * 359.97438 * 15 14 13 17 17 N 1.36339 * 125.88915 * 274.68315 * 13 12 3 18 18 H 0.97006 * 125.63760 * 0.02562 * 17 13 12 19 19 H 1.08999 * 109.47047 * 300.00103 * 1 2 3 20 20 H 1.09001 * 109.46536 * 60.00231 * 1 2 3 21 21 H 1.08995 * 109.47029 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47047 * 239.99897 * 2 1 3 23 23 H 1.08995 * 109.46703 * 120.00191 * 2 1 3 24 24 H 0.97001 * 120.00186 * 180.02562 * 7 6 4 25 25 H 1.09006 * 109.46708 * 210.00458 * 12 3 2 26 26 H 1.09004 * 109.46722 * 329.99859 * 12 3 2 27 27 H 1.08004 * 126.28866 * 0.02562 * 14 13 12 28 28 H 1.08005 * 126.29434 * 179.97438 * 15 14 13 29 29 H 1.08004 * 125.88850 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1517 2.0603 1.1816 5 1 1.4512 1.8881 1.9854 6 6 3.1872 2.9700 1.3463 7 7 4.2671 2.8801 0.5994 8 14 3.0479 4.3216 2.6282 9 1 1.7445 4.2055 3.3303 10 1 4.1534 4.1880 3.6105 11 1 3.1347 5.6462 1.9622 12 6 2.3641 2.0359 -1.2642 13 6 1.1479 2.7323 -1.8182 14 6 0.8316 4.0312 -1.6415 15 6 -0.3780 4.2673 -2.3242 16 6 -0.7544 3.1038 -2.8926 17 7 0.1808 2.1592 -2.5897 18 1 0.1605 1.2320 -2.8742 19 1 -0.3633 0.5138 0.8900 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 4.9909 3.5156 0.7147 25 1 3.1539 2.7668 -1.0907 26 1 2.7113 1.2883 -1.9775 27 1 1.4013 4.7572 -1.0805 28 1 -0.9066 5.2074 -2.3818 29 1 -1.6416 2.9482 -3.4885 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388390556.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:58 Heat of formation + Delta-G solvation = 45.829104 kcal Electronic energy + Delta-G solvation = -12438.684353 eV Core-core repulsion = 10362.519302 eV Total energy + Delta-G solvation = -2076.165051 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.71365 -37.63563 -33.84420 -31.82267 -31.55781 -29.70462 -26.90150 -25.00019 -22.28233 -21.31774 -20.81160 -18.96381 -17.82990 -16.80343 -15.75536 -15.60851 -14.80731 -14.43834 -14.33262 -14.11528 -13.58742 -13.34126 -13.13952 -12.92249 -12.64665 -12.46944 -12.30541 -12.07608 -11.76505 -11.54184 -10.52869 -9.54945 -8.72199 -8.61269 -7.85227 -5.42318 1.42347 1.47708 1.56251 1.60777 2.28068 2.52081 2.71532 3.26004 3.82573 4.36790 4.44505 4.52877 4.64120 4.75400 4.81408 4.82761 5.01950 5.03706 5.24332 5.48099 5.52151 5.60482 5.68015 5.72982 6.31949 6.38442 6.55405 7.02803 7.15426 7.85062 8.34825 9.12654 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.032277 B = 0.015305 C = 0.012316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.285856 B = 1829.031775 C = 2272.882875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.134 3.866 3 N -0.592 5.592 4 C -0.258 4.258 5 H 0.049 0.951 6 C -0.031 4.031 7 N -0.915 5.915 8 Si 0.949 3.051 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.202 3.798 13 C 0.024 3.976 14 C -0.232 4.232 15 C -0.226 4.226 16 C -0.017 4.017 17 N -0.548 5.548 18 H 0.418 0.582 19 H 0.027 0.973 20 H 0.047 0.953 21 H 0.070 0.930 22 H 0.053 0.947 23 H 0.035 0.965 24 H 0.253 0.747 25 H 0.086 0.914 26 H 0.040 0.960 27 H 0.097 0.903 28 H 0.141 0.859 29 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.134 -2.621 -6.399 10.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.009 3.991 3 N -0.313 5.313 4 C -0.388 4.388 5 H 0.067 0.933 6 C -0.229 4.229 7 N -0.559 5.559 8 Si 0.778 3.222 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.075 3.925 13 C -0.092 4.092 14 C -0.257 4.257 15 C -0.251 4.251 16 C -0.148 4.148 17 N -0.145 5.145 18 H 0.256 0.744 19 H 0.046 0.954 20 H 0.066 0.934 21 H 0.088 0.912 22 H 0.071 0.929 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.104 0.896 26 H 0.058 0.942 27 H 0.115 0.885 28 H 0.159 0.841 29 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -7.973 -2.720 -6.421 10.592 hybrid contribution 0.204 0.645 0.771 1.026 sum -7.769 -2.075 -5.650 9.828 Atomic orbital electron populations 1.22194 0.97884 1.00702 1.00586 1.21027 0.93363 0.85407 0.99287 1.43991 1.76140 1.09405 1.01730 1.19121 1.06415 1.19813 0.93460 0.93339 1.25634 0.94060 1.02921 1.00248 1.70041 1.05359 1.36940 1.43583 0.85503 0.77502 0.80024 0.79214 1.19862 1.21363 1.21588 1.19481 0.91526 0.96259 0.85238 1.21676 0.95525 0.93844 0.98154 1.20654 1.00896 0.96039 1.08118 1.21044 0.98702 0.99316 1.05991 1.22209 0.97242 0.88510 1.06835 1.42016 1.19239 1.11809 1.41424 0.74408 0.95388 0.93352 0.91159 0.92906 0.94631 0.93770 0.89647 0.94167 0.88481 0.84128 0.78511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.36 10.21 71.99 0.74 -4.62 15 2 C 0.13 5.48 6.44 86.38 0.56 6.03 15 3 N -0.59 -29.38 2.44 -706.32 -1.72 -31.10 15 4 C -0.26 -14.37 9.48 84.03 0.80 -13.57 15 5 H 0.05 2.76 7.92 -2.91 -0.02 2.74 15 6 C -0.03 -1.77 4.96 84.86 0.42 -1.35 15 7 N -0.91 -53.37 11.32 21.65 0.25 -53.12 15 8 Si 0.95 45.87 29.61 68.60 2.03 47.90 15 9 H -0.27 -12.98 7.11 99.48 0.71 -12.27 15 10 H -0.29 -13.59 7.11 99.48 0.71 -12.89 15 11 H -0.29 -14.00 7.11 99.48 0.71 -13.30 15 12 C 0.20 9.61 5.87 85.63 0.50 10.11 15 13 C 0.02 1.01 6.63 41.08 0.27 1.29 15 14 C -0.23 -10.29 10.76 22.14 0.24 -10.05 15 15 C -0.23 -8.08 10.86 22.14 0.24 -7.84 15 16 C -0.02 -0.51 11.94 83.21 0.99 0.48 15 17 N -0.55 -17.89 4.98 -182.77 -0.91 -18.81 15 18 H 0.42 11.06 8.49 -92.70 -0.79 10.27 15 19 H 0.03 1.08 8.14 -2.39 -0.02 1.06 15 20 H 0.05 1.61 6.34 -2.39 -0.02 1.59 15 21 H 0.07 1.95 8.14 -2.39 -0.02 1.93 15 22 H 0.05 1.92 7.84 -2.39 -0.02 1.90 15 23 H 0.04 1.50 8.08 -2.39 -0.02 1.48 15 24 H 0.25 14.24 8.31 -92.71 -0.77 13.47 15 25 H 0.09 4.73 5.34 -2.38 -0.01 4.72 15 26 H 0.04 1.75 7.86 -2.38 -0.02 1.73 15 27 H 0.10 4.72 8.06 -2.91 -0.02 4.70 15 28 H 0.14 4.34 8.06 -2.91 -0.02 4.32 15 29 H 0.20 3.92 8.06 -2.91 -0.02 3.89 15 Total: -1.00 -64.06 247.46 4.75 -59.31 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.35 Total: 15.34 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 4.76 Total: -19.52 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -2.39 Total: -103.03 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -64.06 4.75 -59.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388390556.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.137 kcal (2) G-P(sol) polarization free energy of solvation -64.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds