Wall clock time and date at job start Mon Mar 30 2020 02:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 115.55054 * 2 1 4 4 C 1.53002 * 117.51856 * 214.29310 * 2 1 3 5 5 C 1.52999 * 60.00002 * 252.52257 * 4 2 1 6 6 H 1.09003 * 117.50041 * 107.49067 * 5 4 2 7 7 C 1.53001 * 117.51391 * 252.51599 * 5 4 2 8 8 N 1.46497 * 109.47042 * 243.71554 * 7 5 4 9 9 C 1.36944 * 119.99837 * 90.00386 * 8 7 5 10 10 H 1.07994 * 119.99971 * 21.90496 * 9 8 7 11 11 C 1.38815 * 119.99998 * 201.90347 * 9 8 7 12 12 N 1.31620 * 119.99661 * 7.95918 * 11 9 8 13 13 Si 1.86803 * 119.99818 * 187.96062 * 11 9 8 14 14 H 1.48498 * 109.46962 * 84.97954 * 13 11 9 15 15 H 1.48499 * 109.46709 * 204.97610 * 13 11 9 16 16 H 1.48497 * 109.46722 * 324.97742 * 13 11 9 17 17 C 1.46494 * 120.00220 * 270.00054 * 8 7 5 18 18 C 1.47200 * 109.47257 * 84.13885 * 17 8 7 19 19 N 4.94115 * 86.77418 * 131.40073 * 2 1 3 20 20 H 1.08999 * 109.47171 * 274.33404 * 1 2 3 21 21 H 1.09004 * 109.47054 * 34.33007 * 1 2 3 22 22 H 1.08992 * 109.47602 * 154.33403 * 1 2 3 23 23 H 1.08991 * 117.50195 * 145.02724 * 4 2 1 24 24 H 1.09007 * 117.49313 * 0.02562 * 4 2 1 25 25 H 1.08998 * 109.47501 * 3.72157 * 7 5 4 26 26 H 1.09004 * 109.47046 * 123.71970 * 7 5 4 27 27 H 0.96998 * 119.99202 * 180.02562 * 12 11 9 28 28 H 1.09005 * 109.47566 * 204.13816 * 17 8 7 29 29 H 1.08998 * 109.47292 * 324.13871 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1210 -0.7645 5 6 2.2364 -1.1207 0.7655 6 1 1.6111 -1.8582 1.2687 7 6 3.5484 -0.7752 1.4727 8 7 4.0089 -1.9343 2.2411 9 6 4.8333 -2.8591 1.6575 10 1 5.4235 -2.5880 0.7946 11 6 4.9103 -4.1449 2.1750 12 7 4.0804 -4.5230 3.1240 13 14 6.1917 -5.3383 1.5244 14 1 7.4749 -5.1257 2.2408 15 1 5.7271 -6.7315 1.7440 16 1 6.3915 -5.1062 0.0713 17 6 3.5877 -2.1041 3.6338 18 6 2.2693 -2.7579 3.6715 19 7 1.2520 -3.2625 3.7005 20 1 -0.3633 0.0777 1.0247 21 1 -0.3633 0.8487 -0.5796 22 1 -0.3634 -0.9262 -0.4451 23 1 3.1720 -0.8752 -1.2676 24 1 1.6119 -1.8586 -1.2681 25 1 4.3015 -0.5082 0.7313 26 1 3.3874 0.0666 2.1463 27 1 4.1345 -5.4214 3.4858 28 1 4.3148 -2.7221 4.1607 29 1 3.5232 -1.1285 4.1155 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388464602.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:12 Heat of formation + Delta-G solvation = 51.060036 kcal Electronic energy + Delta-G solvation = -12130.309202 eV Core-core repulsion = 10054.370981 eV Total energy + Delta-G solvation = -2075.938220 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.20328 -37.52526 -35.98932 -33.20840 -30.08276 -28.72885 -27.41646 -23.90080 -21.74259 -21.01295 -19.28402 -17.77945 -17.06906 -15.93583 -15.60978 -15.22537 -14.94545 -14.13469 -13.89970 -13.60245 -13.41831 -13.14731 -12.99768 -12.75061 -12.66389 -12.26585 -12.17441 -11.94607 -11.90018 -11.72787 -10.80914 -10.57615 -10.41791 -8.93924 -7.87721 -5.33691 1.52125 1.53525 1.60278 2.33548 2.54124 2.64500 2.99042 3.33459 3.70800 3.97488 4.07450 4.12352 4.25063 4.49712 4.73300 4.87530 4.93316 4.96367 5.02150 5.03063 5.17608 5.24481 5.39608 5.44597 5.59855 5.68212 6.32959 7.10861 7.38116 7.80903 8.21632 9.16961 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.035893 B = 0.012487 C = 0.010612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.919524 B = 2241.727038 C = 2637.817768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.140 4.140 3 H 0.125 0.875 4 C -0.177 4.177 5 C -0.177 4.177 6 H 0.056 0.944 7 C 0.173 3.827 8 N -0.594 5.594 9 C -0.248 4.248 10 H 0.083 0.917 11 C -0.050 4.050 12 N -0.939 5.939 13 Si 0.969 3.031 14 H -0.277 1.277 15 H -0.309 1.309 16 H -0.275 1.275 17 C 0.256 3.744 18 C 0.268 3.732 19 N -0.559 5.559 20 H 0.050 0.950 21 H 0.081 0.919 22 H 0.039 0.961 23 H 0.100 0.900 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.247 0.753 28 H 0.104 0.896 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.467 10.278 -3.910 11.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.159 4.159 3 H 0.143 0.857 4 C -0.214 4.214 5 C -0.198 4.198 6 H 0.074 0.926 7 C 0.048 3.952 8 N -0.314 5.314 9 C -0.378 4.378 10 H 0.101 0.899 11 C -0.244 4.244 12 N -0.586 5.586 13 Si 0.799 3.201 14 H -0.204 1.204 15 H -0.236 1.236 16 H -0.200 1.200 17 C 0.126 3.874 18 C -0.049 4.049 19 N -0.242 5.242 20 H 0.069 0.931 21 H 0.100 0.900 22 H 0.058 0.942 23 H 0.119 0.881 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.122 0.878 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.976 9.404 -3.815 10.196 hybrid contribution 0.641 -1.432 -0.320 1.601 sum -0.335 7.972 -4.135 8.987 Atomic orbital electron populations 1.21352 0.93028 1.01811 1.01530 1.22476 0.95146 0.94636 1.03633 0.85749 1.23076 1.02518 1.01447 0.94369 1.23241 1.00955 1.01223 0.94402 0.92592 1.20802 0.91248 0.88806 0.94355 1.44290 1.53624 1.25169 1.08296 1.19604 1.15581 0.90498 1.12139 0.89910 1.25648 1.00440 0.98436 0.99880 1.69929 1.38816 1.18508 1.31383 0.85237 0.79063 0.77519 0.78279 1.20360 1.23610 1.19973 1.18627 0.84438 0.97123 0.87207 1.31176 0.94014 0.90168 0.89531 1.80784 1.17457 1.14067 1.11884 0.93050 0.89994 0.94203 0.88141 0.90892 0.91724 0.90604 0.94321 0.87804 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.13 10.19 71.98 0.73 -2.39 15 2 C -0.14 -3.95 6.13 -10.79 -0.07 -4.01 15 3 H 0.12 2.87 8.14 -2.39 -0.02 2.85 15 4 C -0.18 -5.72 9.82 30.59 0.30 -5.42 15 5 C -0.18 -6.54 5.62 -10.79 -0.06 -6.60 15 6 H 0.06 2.58 7.06 -2.39 -0.02 2.56 15 7 C 0.17 6.16 5.98 86.38 0.52 6.68 15 8 N -0.59 -26.12 2.50 -712.57 -1.78 -27.91 15 9 C -0.25 -12.24 9.70 84.03 0.81 -11.42 15 10 H 0.08 3.94 7.83 -2.91 -0.02 3.91 15 11 C -0.05 -2.59 5.16 84.86 0.44 -2.15 15 12 N -0.94 -52.18 8.93 21.65 0.19 -51.99 15 13 Si 0.97 43.23 29.56 68.60 2.03 45.26 15 14 H -0.28 -11.89 7.11 99.48 0.71 -11.18 15 15 H -0.31 -14.54 7.11 99.48 0.71 -13.83 15 16 H -0.27 -11.83 7.11 99.48 0.71 -11.13 15 17 C 0.26 10.87 5.44 84.58 0.46 11.33 15 18 C 0.27 13.09 12.45 89.44 1.11 14.21 15 19 N -0.56 -29.61 18.54 20.01 0.37 -29.24 15 20 H 0.05 1.39 8.14 -2.39 -0.02 1.37 15 21 H 0.08 1.66 8.14 -2.38 -0.02 1.64 15 22 H 0.04 1.11 7.90 -2.39 -0.02 1.09 15 23 H 0.10 2.98 8.03 -2.39 -0.02 2.96 15 24 H 0.07 2.45 8.05 -2.38 -0.02 2.43 15 25 H 0.06 2.16 7.77 -2.39 -0.02 2.14 15 26 H 0.08 2.27 7.95 -2.38 -0.02 2.25 15 27 H 0.25 13.93 8.31 -92.71 -0.77 13.16 15 28 H 0.10 4.83 6.33 -2.38 -0.02 4.82 15 29 H 0.10 3.28 7.98 -2.39 -0.02 3.26 15 Total: -1.00 -61.55 252.96 6.18 -55.37 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 1.12 Total: 8.30 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 4.25 Total: 0.21 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -1.22 Total: -109.13 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -61.55 6.18 -55.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388464602.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.427 kcal (2) G-P(sol) polarization free energy of solvation -61.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds