Wall clock time and date at job start Mon Mar 30 2020 02:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 115.56805 * 2 1 4 4 C 1.53001 * 117.49607 * 214.31304 * 2 1 3 5 5 C 1.52995 * 60.00028 * 252.51264 * 4 2 1 6 6 H 1.09006 * 117.49967 * 252.49015 * 5 4 2 7 7 C 1.52998 * 117.50026 * 107.49295 * 5 4 2 8 8 N 1.46498 * 109.47417 * 116.39029 * 7 5 4 9 9 C 1.36932 * 120.00040 * 269.99743 * 8 7 5 10 10 H 1.07998 * 120.00398 * 335.71021 * 9 8 7 11 11 C 1.38820 * 119.99919 * 155.70574 * 9 8 7 12 12 N 1.31619 * 119.99728 * 350.97813 * 11 9 8 13 13 Si 1.86800 * 119.99803 * 170.98078 * 11 9 8 14 14 H 1.48503 * 109.47212 * 60.00127 * 13 11 9 15 15 H 1.48504 * 109.46827 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47235 * 299.99688 * 13 11 9 17 17 C 1.46505 * 120.00154 * 89.99916 * 8 7 5 18 18 C 1.47202 * 109.46853 * 278.00827 * 17 8 7 19 19 N 4.88656 * 127.89234 * 106.29341 * 2 1 3 20 20 H 1.08995 * 109.47405 * 274.31117 * 1 2 3 21 21 H 1.09010 * 109.47194 * 34.30814 * 1 2 3 22 22 H 1.08996 * 109.47841 * 154.30713 * 1 2 3 23 23 H 1.09005 * 117.49864 * 145.02105 * 4 2 1 24 24 H 1.09000 * 117.49985 * 359.97438 * 4 2 1 25 25 H 1.09002 * 109.47425 * 356.38882 * 7 5 4 26 26 H 1.09006 * 109.46770 * 236.38971 * 7 5 4 27 27 H 0.96998 * 119.99780 * 180.02562 * 12 11 9 28 28 H 1.08994 * 109.47302 * 158.00410 * 17 8 7 29 29 H 1.09001 * 109.46799 * 38.00417 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2363 -1.1210 -0.7651 5 6 2.2363 -1.1211 0.7649 6 1 3.1715 -0.8757 1.2682 7 6 1.3587 -2.1563 1.4713 8 7 2.2056 -3.0706 2.2413 9 6 2.6862 -4.2129 1.6589 10 1 2.1668 -4.6508 0.8194 11 6 3.8413 -4.8081 2.1475 12 7 4.5716 -4.1859 3.0485 13 14 4.3590 -6.4919 1.5260 14 1 4.5795 -6.4317 0.0587 15 1 5.6177 -6.9023 2.1989 16 1 3.2918 -7.4800 1.8262 17 6 2.5383 -2.7629 3.6345 18 6 3.6631 -1.8141 3.6722 19 7 4.5312 -1.0819 3.7014 20 1 -0.3634 0.0772 1.0247 21 1 -0.3634 0.8489 -0.5793 22 1 -0.3634 -0.9260 -0.4455 23 1 3.1714 -0.8752 -1.2684 24 1 1.6111 -1.8587 -1.2680 25 1 0.7946 -2.7215 0.7293 26 1 0.6673 -1.6482 2.1437 27 1 5.3788 -4.6016 3.3897 28 1 2.8191 -3.6801 4.1521 29 1 1.6721 -2.3192 4.1254 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388464607.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:19 Heat of formation + Delta-G solvation = 50.703721 kcal Electronic energy + Delta-G solvation = -12183.166801 eV Core-core repulsion = 10107.213130 eV Total energy + Delta-G solvation = -2075.953671 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.30946 -37.51914 -35.99042 -33.15599 -29.60836 -28.84971 -27.75654 -23.93540 -22.19015 -20.21732 -19.23464 -17.95024 -17.07113 -16.26608 -15.48591 -15.27321 -14.89136 -14.10168 -13.77713 -13.52140 -13.48026 -13.17777 -13.01154 -12.69821 -12.53213 -12.37692 -12.12942 -11.97131 -11.90799 -11.71868 -10.73665 -10.56118 -10.45507 -8.90889 -7.88411 -5.35261 1.53270 1.53788 1.60171 2.32216 2.52940 2.62811 2.99210 3.33585 3.74689 3.94933 3.98845 4.13725 4.27091 4.51180 4.72130 4.91828 4.96586 4.99991 5.06057 5.09510 5.24750 5.27296 5.36192 5.49386 5.58015 5.68636 6.34240 7.10676 7.35500 7.80542 8.22762 9.17042 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.034725 B = 0.012945 C = 0.010774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.147186 B = 2162.532082 C = 2598.207489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.143 4.143 3 H 0.092 0.908 4 C -0.178 4.178 5 C -0.178 4.178 6 H 0.054 0.946 7 C 0.178 3.822 8 N -0.593 5.593 9 C -0.252 4.252 10 H 0.082 0.918 11 C -0.047 4.047 12 N -0.938 5.938 13 Si 0.969 3.031 14 H -0.286 1.286 15 H -0.304 1.304 16 H -0.269 1.269 17 C 0.256 3.744 18 C 0.267 3.733 19 N -0.557 5.557 20 H 0.066 0.934 21 H 0.071 0.929 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.101 0.899 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.248 0.752 28 H 0.102 0.898 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.506 2.985 -3.606 11.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.162 4.162 3 H 0.111 0.889 4 C -0.215 4.215 5 C -0.199 4.199 6 H 0.072 0.928 7 C 0.053 3.947 8 N -0.313 5.313 9 C -0.382 4.382 10 H 0.100 0.900 11 C -0.242 4.242 12 N -0.584 5.584 13 Si 0.798 3.202 14 H -0.212 1.212 15 H -0.231 1.231 16 H -0.194 1.194 17 C 0.126 3.874 18 C -0.051 4.051 19 N -0.239 5.239 20 H 0.085 0.915 21 H 0.090 0.910 22 H 0.080 0.920 23 H 0.091 0.909 24 H 0.119 0.881 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.057 0.943 28 H 0.120 0.880 29 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.133 3.957 -3.504 10.552 hybrid contribution 1.148 -1.088 -0.362 1.623 sum -7.985 2.870 -3.866 9.324 Atomic orbital electron populations 1.21310 0.90665 1.02563 1.02495 1.22435 0.96830 0.93238 1.03732 0.88933 1.23045 1.01896 1.02169 0.94347 1.23208 1.00971 1.01265 0.94469 0.92762 1.20732 0.90996 0.88810 0.94205 1.44277 1.56990 1.21930 1.08111 1.19541 1.04592 0.99878 1.14195 0.90042 1.25690 0.96101 1.02310 1.00068 1.69936 1.16140 1.38337 1.34016 0.85313 0.76905 0.80681 0.77298 1.21217 1.23110 1.19415 1.18591 0.87834 0.93748 0.87251 1.31191 0.94184 0.90175 0.89519 1.80787 1.13631 1.17628 1.11895 0.91502 0.91002 0.91983 0.90915 0.88070 0.91833 0.90754 0.94289 0.87989 0.88059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.48 9.19 71.98 0.66 -1.82 15 2 C -0.14 -4.18 6.41 -10.80 -0.07 -4.25 15 3 H 0.09 2.65 8.14 -2.39 -0.02 2.63 15 4 C -0.18 -5.87 9.82 30.59 0.30 -5.57 15 5 C -0.18 -6.71 5.87 -10.80 -0.06 -6.77 15 6 H 0.05 2.55 6.98 -2.38 -0.02 2.53 15 7 C 0.18 6.38 5.04 86.38 0.44 6.82 15 8 N -0.59 -26.15 2.51 -712.54 -1.79 -27.94 15 9 C -0.25 -12.43 9.66 84.04 0.81 -11.62 15 10 H 0.08 3.87 7.84 -2.91 -0.02 3.85 15 11 C -0.05 -2.44 5.11 84.86 0.43 -2.01 15 12 N -0.94 -52.18 9.16 21.65 0.20 -51.98 15 13 Si 0.97 43.04 29.56 68.60 2.03 45.07 15 14 H -0.29 -12.66 7.11 99.48 0.71 -11.95 15 15 H -0.30 -14.09 7.11 99.48 0.71 -13.39 15 16 H -0.27 -11.26 7.11 99.48 0.71 -10.55 15 17 C 0.26 10.83 5.43 84.57 0.46 11.29 15 18 C 0.27 12.97 12.40 89.44 1.11 14.08 15 19 N -0.56 -29.42 18.54 20.01 0.37 -29.04 15 20 H 0.07 1.38 7.83 -2.39 -0.02 1.36 15 21 H 0.07 1.30 8.14 -2.38 -0.02 1.28 15 22 H 0.06 1.30 7.90 -2.39 -0.02 1.29 15 23 H 0.07 2.47 8.14 -2.38 -0.02 2.45 15 24 H 0.10 3.08 7.94 -2.39 -0.02 3.06 15 25 H 0.06 2.16 7.77 -2.39 -0.02 2.14 15 26 H 0.07 2.26 7.60 -2.38 -0.02 2.24 15 27 H 0.25 13.98 8.31 -92.71 -0.77 13.21 15 28 H 0.10 4.72 6.40 -2.39 -0.02 4.70 15 29 H 0.10 3.31 8.01 -2.39 -0.02 3.29 15 Total: -1.00 -61.62 251.04 6.01 -55.61 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 1.12 Total: 8.13 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 4.08 Total: 0.15 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -1.22 Total: -108.97 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -61.62 6.01 -55.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388464607.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.315 kcal (2) G-P(sol) polarization free energy of solvation -61.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds