Wall clock time and date at job start Mon Mar 30 2020 02:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47198 * 2 1 4 4 N 1.30843 * 125.90095 * 89.96870 * 3 2 1 5 5 N 1.40080 * 108.20533 * 180.02562 * 4 3 2 6 6 H 0.97005 * 126.03710 * 179.97438 * 5 4 3 7 7 C 1.34950 * 107.92794 * 0.02562 * 5 4 3 8 8 C 1.50703 * 126.12738 * 179.97438 * 7 5 4 9 9 C 1.35315 * 107.74654 * 0.22852 * 7 5 4 10 10 C 1.50694 * 126.04050 * 179.76869 * 9 7 5 11 11 C 1.50699 * 109.46989 * 90.02539 * 10 9 7 12 12 H 1.07997 * 120.00167 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00037 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99831 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00001 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47252 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47217 * 120.00369 * 15 13 11 18 18 H 1.48500 * 109.46901 * 239.99802 * 15 13 11 19 19 H 1.09005 * 109.47055 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47536 * 299.99864 * 1 2 3 21 21 H 1.08995 * 109.47228 * 60.00567 * 1 2 3 22 22 H 1.08998 * 109.47536 * 240.00136 * 2 1 3 23 23 H 1.09005 * 109.47125 * 119.99405 * 2 1 3 24 24 H 1.09002 * 109.47152 * 90.02651 * 8 7 5 25 25 H 1.09001 * 109.46980 * 330.02751 * 8 7 5 26 26 H 1.09004 * 109.47113 * 210.02732 * 8 7 5 27 27 H 1.09004 * 109.47049 * 210.02572 * 10 9 7 28 28 H 1.08996 * 109.47142 * 330.02215 * 10 9 7 29 29 H 0.96995 * 119.99948 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2875 2.1443 1.0599 5 7 2.7320 3.4027 0.6341 6 1 2.9920 4.1403 1.2079 7 6 2.7337 3.4079 -0.7154 8 6 3.1397 4.5592 -1.5990 9 6 2.3000 2.1961 -1.1331 10 6 2.1377 1.7579 -2.5658 11 6 3.4218 1.1343 -3.0488 12 1 4.2703 1.0621 -2.3846 13 6 3.5130 0.6549 -4.3384 14 7 2.4792 0.7415 -5.1467 15 14 5.1045 -0.1187 -4.9369 16 1 6.1081 -0.0959 -3.8427 17 1 4.8489 -1.5233 -5.3458 18 1 5.6216 0.6486 -6.0983 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8901 24 1 4.2067 4.4946 -1.8125 25 1 2.9272 5.4998 -1.0907 26 1 2.5790 4.5160 -2.5327 27 1 1.3313 1.0277 -2.6333 28 1 1.8980 2.6222 -3.1851 29 1 2.5432 0.4040 -6.0538 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409442400.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:34 Heat of formation + Delta-G solvation = 24.905498 kcal Electronic energy + Delta-G solvation = -12096.073776 eV Core-core repulsion = 10019.001410 eV Total energy + Delta-G solvation = -2077.072366 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.09838 -35.61381 -35.07155 -33.16532 -31.58484 -29.36306 -27.36617 -24.92784 -24.60846 -20.64568 -20.02713 -18.41020 -17.98362 -16.44071 -15.87699 -15.33348 -14.97728 -14.41444 -14.24922 -13.77192 -13.71328 -13.11013 -13.08802 -12.91597 -12.59750 -12.54524 -12.22017 -11.99158 -11.73038 -11.45357 -11.13838 -10.49382 -10.02650 -9.04123 -8.08281 -6.20271 1.03045 1.41947 1.43430 1.55483 1.97833 2.13603 2.48715 3.20454 3.82908 3.98823 4.28364 4.44835 4.54448 4.61711 4.78514 4.80814 4.97937 5.10181 5.14799 5.23634 5.38297 5.43572 5.49985 5.82078 5.87858 5.93792 6.35851 6.63134 6.91786 6.92698 7.47199 8.99213 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.032855 B = 0.012406 C = 0.010411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.018644 B = 2256.500844 C = 2688.745903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.043 4.043 3 C 0.071 3.929 4 N -0.326 5.326 5 N -0.474 5.474 6 H 0.447 0.553 7 C 0.071 3.929 8 C -0.078 4.078 9 C -0.227 4.227 10 C 0.103 3.897 11 C -0.513 4.513 12 H 0.044 0.956 13 C 0.008 3.992 14 N -0.929 5.929 15 Si 0.955 3.045 16 H -0.271 1.271 17 H -0.278 1.278 18 H -0.277 1.277 19 H 0.081 0.919 20 H 0.057 0.943 21 H 0.040 0.960 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.001 0.999 28 H 0.003 0.997 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.063 4.109 8.135 9.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.083 4.083 3 C -0.094 4.094 4 N -0.150 5.150 5 N -0.185 5.185 6 H 0.293 0.707 7 C -0.057 4.057 8 C -0.136 4.136 9 C -0.238 4.238 10 C 0.065 3.935 11 C -0.551 4.551 12 H 0.062 0.938 13 C -0.190 4.190 14 N -0.570 5.570 15 Si 0.780 3.220 16 H -0.195 1.195 17 H -0.204 1.204 18 H -0.202 1.202 19 H 0.100 0.900 20 H 0.076 0.924 21 H 0.059 0.941 22 H 0.089 0.911 23 H 0.102 0.898 24 H 0.099 0.901 25 H 0.116 0.884 26 H 0.091 0.909 27 H 0.019 0.981 28 H 0.021 0.979 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.102 4.105 9.235 10.106 hybrid contribution 0.834 -0.075 -1.193 1.458 sum 0.732 4.030 8.042 9.024 Atomic orbital electron populations 1.21597 0.93279 1.02774 1.01286 1.19953 0.97033 0.88363 1.02915 1.22455 0.99005 0.97733 0.90252 1.76983 1.23429 0.92031 1.22528 1.45943 1.55068 1.12927 1.04597 0.70684 1.21156 1.01188 0.98227 0.85092 1.20391 1.02444 0.93177 0.97617 1.20437 1.11307 0.94479 0.97536 1.17282 0.95385 0.94498 0.86293 1.21385 0.98625 1.38286 0.96847 0.93804 1.25785 0.99521 0.96661 0.97009 1.70074 1.31577 1.48080 1.07233 0.85551 0.79926 0.78294 0.78193 1.19514 1.20405 1.20233 0.90008 0.92423 0.94087 0.91136 0.89751 0.90123 0.88406 0.90940 0.98100 0.97875 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 9.89 71.98 0.71 -3.46 15 2 C -0.04 -1.61 6.17 29.85 0.18 -1.42 15 3 C 0.07 3.00 6.47 43.10 0.28 3.28 15 4 N -0.33 -12.75 12.70 -47.38 -0.60 -13.35 15 5 N -0.47 -15.89 7.36 -48.00 -0.35 -16.24 15 6 H 0.45 10.84 8.96 -213.33 -1.91 8.93 15 7 C 0.07 2.69 7.21 41.41 0.30 2.99 15 8 C -0.08 -2.36 10.22 71.24 0.73 -1.63 15 9 C -0.23 -10.37 5.29 -20.14 -0.11 -10.48 15 10 C 0.10 5.51 4.92 29.10 0.14 5.65 15 11 C -0.51 -29.12 9.09 25.60 0.23 -28.89 15 12 H 0.04 2.52 7.74 -2.91 -0.02 2.49 15 13 C 0.01 0.45 5.46 84.65 0.46 0.91 15 14 N -0.93 -55.21 13.29 21.45 0.28 -54.93 15 15 Si 0.95 44.20 29.54 68.60 2.03 46.23 15 16 H -0.27 -12.28 7.11 99.48 0.71 -11.57 15 17 H -0.28 -12.56 7.11 99.48 0.71 -11.86 15 18 H -0.28 -12.38 7.11 99.48 0.71 -11.68 15 19 H 0.08 2.14 8.14 -2.38 -0.02 2.12 15 20 H 0.06 1.70 8.14 -2.39 -0.02 1.68 15 21 H 0.04 1.44 8.14 -2.39 -0.02 1.42 15 22 H 0.07 2.91 7.95 -2.39 -0.02 2.89 15 23 H 0.08 2.75 8.14 -2.38 -0.02 2.73 15 24 H 0.08 2.38 8.14 -2.39 -0.02 2.36 15 25 H 0.10 2.10 8.14 -2.39 -0.02 2.08 15 26 H 0.07 2.45 7.14 -2.38 -0.02 2.43 15 27 H 0.00 0.04 7.95 -2.38 -0.02 0.02 15 28 H 0.00 0.17 7.14 -2.39 -0.02 0.15 15 29 H 0.26 14.68 8.31 -92.71 -0.77 13.91 15 Total: -1.00 -66.75 252.96 3.52 -63.23 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -0.77 Total: 8.10 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 2.93 Total: -33.03 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -0.67 Total: -84.53 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -66.75 3.52 -63.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409442400.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.134 kcal (2) G-P(sol) polarization free energy of solvation -66.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds