Wall clock time and date at job start Mon Mar 30 2020 02:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36935 * 119.99910 * 2 1 4 4 H 1.07997 * 120.00265 * 178.81600 * 3 2 1 5 5 C 1.38810 * 119.99976 * 359.09081 * 3 2 1 6 6 N 1.31624 * 120.00269 * 16.06503 * 5 3 2 7 7 Si 1.86802 * 120.00067 * 196.06270 * 5 3 2 8 8 H 1.48496 * 109.47011 * 60.00348 * 7 5 3 9 9 H 1.48500 * 109.47154 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47105 * 300.00108 * 7 5 3 11 11 C 1.46498 * 120.00215 * 179.97438 * 2 1 3 12 12 C 1.47197 * 110.01738 * 184.55421 * 11 2 1 13 13 N 3.40053 * 165.64406 * 166.66054 * 2 1 3 14 14 C 1.54264 * 110.02948 * 63.11048 * 11 2 1 15 15 C 1.54895 * 104.19623 * 217.10332 * 14 11 2 16 16 C 1.54896 * 102.74482 * 37.94509 * 15 14 11 17 17 C 1.53879 * 110.03466 * 305.94707 * 11 2 1 18 18 H 1.09003 * 109.47167 * 54.67663 * 1 2 3 19 19 H 1.08996 * 109.47013 * 174.67560 * 1 2 3 20 20 H 1.08995 * 109.47286 * 294.67452 * 1 2 3 21 21 H 0.96995 * 120.00280 * 179.97438 * 6 5 3 22 22 H 1.09000 * 110.48828 * 335.77968 * 14 11 2 23 23 H 1.09001 * 110.48716 * 98.42902 * 14 11 2 24 24 H 1.09000 * 110.76066 * 279.63147 * 15 14 11 25 25 H 1.09004 * 110.75940 * 156.25569 * 15 14 11 26 26 H 1.08999 * 110.48345 * 203.37554 * 16 15 14 27 27 H 1.08996 * 110.48595 * 80.73505 * 16 15 14 28 28 H 1.09003 * 110.02846 * 238.57282 * 17 11 2 29 29 H 1.09000 * 110.02767 * 359.97438 * 17 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2295 1.1861 0.0193 5 6 1.4557 2.3879 -0.0191 6 7 0.1738 2.4127 0.2786 7 14 2.3411 3.9706 -0.4671 8 1 2.8968 3.8554 -1.8394 9 1 1.3845 5.1052 -0.4136 10 1 3.4459 4.2094 0.4959 11 6 2.1975 -1.2687 0.0006 12 6 3.6434 -1.0156 0.1103 13 7 4.7594 -0.8204 0.1945 14 6 1.8941 -2.0546 -1.2917 15 6 1.8430 -3.5334 -0.8338 16 6 1.1528 -3.4391 0.5497 17 6 1.7262 -2.1491 1.1713 18 1 -0.3634 0.5942 -0.8385 19 1 -0.3633 -1.0232 -0.0954 20 1 -0.3633 0.4290 0.9338 21 1 -0.3110 3.2527 0.2656 22 1 0.9331 -1.7503 -1.7065 23 1 2.6896 -1.9089 -2.0225 24 1 2.8485 -3.9428 -0.7367 25 1 1.2464 -4.1309 -1.5232 26 1 1.4072 -4.3038 1.1626 27 1 0.0722 -3.3584 0.4322 28 1 2.5684 -2.3895 1.8203 29 1 0.9527 -1.6321 1.7393 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606248320.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:22 Heat of formation + Delta-G solvation = 52.418969 kcal Electronic energy + Delta-G solvation = -12489.441829 eV Core-core repulsion = 10413.562536 eV Total energy + Delta-G solvation = -2075.879293 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.78404 -35.16868 -34.41273 -30.97099 -28.35690 -27.63832 -26.05656 -22.43541 -20.61261 -20.10772 -17.68887 -15.93296 -15.48621 -14.66525 -13.97233 -13.28653 -13.12564 -12.86460 -12.73770 -11.94875 -11.77575 -11.65567 -10.86302 -10.74761 -10.72292 -10.68304 -10.65295 -10.53062 -10.42999 -10.14889 -10.00063 -9.75706 -8.55564 -7.04469 -5.74662 -3.14325 3.38840 3.41362 3.44232 3.49208 3.50689 4.47232 4.62988 5.04002 5.09070 5.22064 5.42317 5.58685 5.84716 5.97570 6.00629 6.04503 6.22561 6.24089 6.42443 6.56684 6.66685 6.72399 6.80654 7.52960 7.65354 7.85388 8.21919 8.32171 9.17020 9.77231 10.18514 11.26141 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.046068 B = 0.013208 C = 0.011327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.651585 B = 2119.482614 C = 2471.412520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.171 3.829 2 N -0.595 5.595 3 C -0.263 4.263 4 H 0.076 0.924 5 C 0.006 3.994 6 N -0.908 5.908 7 Si 0.902 3.098 8 H -0.284 1.284 9 H -0.288 1.288 10 H -0.284 1.284 11 C 0.294 3.706 12 C 0.252 3.748 13 N -0.465 5.465 14 C -0.130 4.130 15 C -0.126 4.126 16 C -0.120 4.120 17 C -0.134 4.134 18 H 0.042 0.958 19 H 0.004 0.996 20 H 0.049 0.951 21 H 0.253 0.747 22 H 0.086 0.914 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.450 -9.871 -1.117 10.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.319 5.319 3 C -0.392 4.392 4 H 0.094 0.906 5 C -0.191 4.191 6 N -0.554 5.554 7 Si 0.732 3.268 8 H -0.210 1.210 9 H -0.214 1.214 10 H -0.210 1.210 11 C 0.201 3.799 12 C -0.066 4.066 13 N -0.142 5.142 14 C -0.171 4.171 15 C -0.164 4.164 16 C -0.158 4.158 17 C -0.175 4.175 18 H 0.060 0.940 19 H 0.022 0.978 20 H 0.067 0.933 21 H 0.063 0.937 22 H 0.105 0.895 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.099 -9.370 -0.968 9.420 hybrid contribution 0.063 1.003 -0.227 1.031 sum 0.162 -8.366 -1.195 8.453 Atomic orbital electron populations 1.21009 0.80168 0.93974 1.02121 1.44151 1.02363 0.98819 1.86539 1.19292 0.90886 0.83431 1.45569 0.90646 1.24733 0.95922 0.97627 1.00854 1.70200 1.07897 1.25323 1.51979 0.86351 0.78635 0.82970 0.78869 1.21035 1.21389 1.21038 1.17860 0.78864 0.88585 0.94601 1.29004 0.94707 0.91096 0.91777 1.81032 1.13683 1.09561 1.09882 1.22990 1.02924 0.93812 0.97394 1.22503 1.00265 0.96751 0.96901 1.22318 1.00195 0.97102 0.96152 1.22778 1.01234 0.95596 0.97851 0.93990 0.97751 0.93291 0.93653 0.89541 0.91844 0.91986 0.91613 0.92072 0.91309 0.92142 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 3.90 7.31 59.85 0.44 4.34 15 2 N -0.59 -14.23 2.83 -168.01 -0.48 -14.70 15 3 C -0.26 -7.21 9.26 -15.06 -0.14 -7.35 15 4 H 0.08 2.12 6.17 -52.49 -0.32 1.80 15 5 C 0.01 0.17 5.32 -17.43 -0.09 0.08 15 6 N -0.91 -25.56 9.74 55.49 0.54 -25.02 15 7 Si 0.90 22.30 29.58 -169.99 -5.03 17.27 15 8 H -0.28 -7.01 7.11 56.52 0.40 -6.61 15 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 15 10 H -0.28 -7.07 7.11 56.52 0.40 -6.67 15 11 C 0.29 5.80 0.92 -133.49 -0.12 5.67 15 12 C 0.25 5.44 11.34 -20.76 -0.24 5.20 15 13 N -0.47 -10.58 18.45 42.15 0.78 -9.80 15 14 C -0.13 -2.15 5.83 -25.07 -0.15 -2.29 15 15 C -0.13 -1.65 6.91 -24.73 -0.17 -1.82 15 16 C -0.12 -1.57 6.83 -25.07 -0.17 -1.74 15 17 C -0.13 -2.22 5.62 -25.62 -0.14 -2.37 15 18 H 0.04 1.05 7.15 -51.93 -0.37 0.68 15 19 H 0.00 0.08 6.99 -51.93 -0.36 -0.29 15 20 H 0.05 1.23 7.03 -51.93 -0.37 0.87 15 21 H 0.25 6.96 8.31 -40.82 -0.34 6.62 15 22 H 0.09 1.45 7.01 -51.93 -0.36 1.09 15 23 H 0.06 1.05 7.83 -51.93 -0.41 0.65 15 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 15 28 H 0.06 0.97 7.66 -51.93 -0.40 0.58 15 29 H 0.09 1.52 7.16 -51.93 -0.37 1.15 15 LS Contribution 239.15 15.07 3.60 3.60 Total: -1.00 -29.19 239.15 -5.16 -34.34 By element: Atomic # 1 Polarization: -1.63 SS G_CDS: -3.79 Total: -5.42 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -0.79 Total: -0.27 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.84 Total: -49.52 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.19 -5.16 -34.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606248320.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.761 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds