Wall clock time and date at job start Mon Mar 30 2020 02:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36935 * 119.99910 * 2 1 4 4 H 1.07997 * 120.00265 * 178.81600 * 3 2 1 5 5 C 1.38810 * 119.99976 * 359.09081 * 3 2 1 6 6 N 1.31624 * 120.00269 * 16.06503 * 5 3 2 7 7 Si 1.86802 * 120.00067 * 196.06270 * 5 3 2 8 8 H 1.48496 * 109.47011 * 60.00348 * 7 5 3 9 9 H 1.48500 * 109.47154 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47105 * 300.00108 * 7 5 3 11 11 C 1.46498 * 120.00215 * 179.97438 * 2 1 3 12 12 C 1.47197 * 110.01738 * 184.55421 * 11 2 1 13 13 N 3.40053 * 165.64406 * 166.66054 * 2 1 3 14 14 C 1.54264 * 110.02948 * 63.11048 * 11 2 1 15 15 C 1.54895 * 104.19623 * 217.10332 * 14 11 2 16 16 C 1.54896 * 102.74482 * 37.94509 * 15 14 11 17 17 C 1.53879 * 110.03466 * 305.94707 * 11 2 1 18 18 H 1.09003 * 109.47167 * 54.67663 * 1 2 3 19 19 H 1.08996 * 109.47013 * 174.67560 * 1 2 3 20 20 H 1.08995 * 109.47286 * 294.67452 * 1 2 3 21 21 H 0.96995 * 120.00280 * 179.97438 * 6 5 3 22 22 H 1.09000 * 110.48828 * 335.77968 * 14 11 2 23 23 H 1.09001 * 110.48716 * 98.42902 * 14 11 2 24 24 H 1.09000 * 110.76066 * 279.63147 * 15 14 11 25 25 H 1.09004 * 110.75940 * 156.25569 * 15 14 11 26 26 H 1.08999 * 110.48345 * 203.37554 * 16 15 14 27 27 H 1.08996 * 110.48595 * 80.73505 * 16 15 14 28 28 H 1.09003 * 110.02846 * 238.57282 * 17 11 2 29 29 H 1.09000 * 110.02767 * 359.97438 * 17 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2295 1.1861 0.0193 5 6 1.4557 2.3879 -0.0191 6 7 0.1738 2.4127 0.2786 7 14 2.3411 3.9706 -0.4671 8 1 2.8968 3.8554 -1.8394 9 1 1.3845 5.1052 -0.4136 10 1 3.4459 4.2094 0.4959 11 6 2.1975 -1.2687 0.0006 12 6 3.6434 -1.0156 0.1103 13 7 4.7594 -0.8204 0.1945 14 6 1.8941 -2.0546 -1.2917 15 6 1.8430 -3.5334 -0.8338 16 6 1.1528 -3.4391 0.5497 17 6 1.7262 -2.1491 1.1713 18 1 -0.3634 0.5942 -0.8385 19 1 -0.3633 -1.0232 -0.0954 20 1 -0.3633 0.4290 0.9338 21 1 -0.3110 3.2527 0.2656 22 1 0.9331 -1.7503 -1.7065 23 1 2.6896 -1.9089 -2.0225 24 1 2.8485 -3.9428 -0.7367 25 1 1.2464 -4.1309 -1.5232 26 1 1.4072 -4.3038 1.1626 27 1 0.0722 -3.3584 0.4322 28 1 2.5684 -2.3895 1.8203 29 1 0.9527 -1.6321 1.7393 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606248320.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:21 Heat of formation + Delta-G solvation = 35.074057 kcal Electronic energy + Delta-G solvation = -12490.193960 eV Core-core repulsion = 10413.562536 eV Total energy + Delta-G solvation = -2076.631424 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.28350 -36.84981 -36.18876 -32.85028 -29.61399 -29.20021 -27.99895 -24.21711 -22.08855 -21.34062 -19.51921 -17.82190 -16.99820 -16.17305 -15.66024 -15.00313 -14.70936 -14.53826 -14.31730 -13.60483 -13.47608 -13.40866 -12.78971 -12.49692 -12.34364 -12.23588 -12.06978 -11.91284 -11.81599 -11.77519 -11.70604 -11.26732 -10.62393 -8.99004 -7.83104 -5.22512 1.40624 1.42497 1.48810 1.70671 1.79200 2.47327 3.02721 3.24904 3.62863 3.83177 3.89449 4.37361 4.58876 4.65791 4.70189 4.90398 4.95581 5.04472 5.19675 5.30945 5.31865 5.46163 5.55095 5.60181 5.62878 5.89272 6.25471 6.56592 7.13038 7.81920 8.16943 9.14598 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.046068 B = 0.013208 C = 0.011327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.651585 B = 2119.482614 C = 2471.412520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.188 3.812 2 N -0.609 5.609 3 C -0.268 4.268 4 H 0.062 0.938 5 C -0.042 4.042 6 N -0.925 5.925 7 Si 0.951 3.049 8 H -0.283 1.283 9 H -0.284 1.284 10 H -0.288 1.288 11 C 0.280 3.720 12 C 0.256 3.744 13 N -0.492 5.492 14 C -0.126 4.126 15 C -0.115 4.115 16 C -0.111 4.111 17 C -0.130 4.130 18 H 0.014 0.986 19 H 0.045 0.955 20 H 0.020 0.980 21 H 0.249 0.751 22 H 0.085 0.915 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.742 -11.709 -1.448 11.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.335 5.335 3 C -0.398 4.398 4 H 0.080 0.920 5 C -0.237 4.237 6 N -0.573 5.573 7 Si 0.780 3.220 8 H -0.210 1.210 9 H -0.209 1.209 10 H -0.214 1.214 11 C 0.188 3.812 12 C -0.061 4.061 13 N -0.169 5.169 14 C -0.167 4.167 15 C -0.153 4.153 16 C -0.148 4.148 17 C -0.171 4.171 18 H 0.033 0.967 19 H 0.064 0.936 20 H 0.039 0.961 21 H 0.059 0.941 22 H 0.104 0.896 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.114 0.886 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.180 -11.245 -1.302 11.321 hybrid contribution 0.204 1.537 -0.108 1.555 sum 0.024 -9.707 -1.411 9.809 Atomic orbital electron populations 1.20684 0.79743 0.95657 0.99447 1.44284 1.02838 0.99415 1.86921 1.19403 0.90555 0.85121 1.44707 0.92001 1.25326 0.96753 0.99911 1.01705 1.70343 1.08577 1.25436 1.52925 0.85588 0.77625 0.80510 0.78277 1.20989 1.20894 1.21424 1.18463 0.77338 0.87706 0.97653 1.29532 0.95240 0.90426 0.90918 1.81017 1.14654 1.10184 1.11034 1.22924 1.02540 0.95905 0.95318 1.22499 1.01356 0.94199 0.97255 1.22326 1.00662 0.95744 0.96076 1.22711 1.01049 0.96721 0.96586 0.96713 0.93618 0.96115 0.94082 0.89632 0.92401 0.91357 0.88647 0.89371 0.90140 0.91911 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 8.53 7.31 127.77 0.93 9.47 15 2 N -0.61 -28.98 2.83 -685.45 -1.94 -30.92 15 3 C -0.27 -14.81 9.26 84.03 0.78 -14.03 15 4 H 0.06 3.53 6.17 -2.91 -0.02 3.52 15 5 C -0.04 -2.33 5.32 84.86 0.45 -1.88 15 6 N -0.93 -52.80 9.74 21.65 0.21 -52.59 15 7 Si 0.95 46.23 29.58 68.60 2.03 48.26 15 8 H -0.28 -13.62 7.11 99.48 0.71 -12.92 15 9 H -0.28 -13.45 7.11 99.48 0.71 -12.74 15 10 H -0.29 -14.02 7.11 99.48 0.71 -13.32 15 11 C 0.28 10.64 0.92 2.52 0.00 10.64 15 12 C 0.26 10.90 11.34 89.44 1.01 11.92 15 13 N -0.49 -22.26 18.45 20.00 0.37 -21.90 15 14 C -0.13 -3.85 5.83 31.67 0.18 -3.67 15 15 C -0.12 -2.51 6.91 31.89 0.22 -2.29 15 16 C -0.11 -2.40 6.83 31.67 0.22 -2.19 15 17 C -0.13 -4.02 5.62 31.32 0.18 -3.85 15 18 H 0.01 0.72 7.15 -2.39 -0.02 0.71 15 19 H 0.05 1.65 6.99 -2.39 -0.02 1.63 15 20 H 0.02 1.04 7.03 -2.39 -0.02 1.03 15 21 H 0.25 13.89 8.31 -92.71 -0.77 13.12 15 22 H 0.09 2.65 7.01 -2.39 -0.02 2.63 15 23 H 0.06 1.82 7.83 -2.39 -0.02 1.80 15 24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 15 25 H 0.10 1.60 8.14 -2.38 -0.02 1.58 15 26 H 0.09 1.52 8.14 -2.39 -0.02 1.50 15 27 H 0.08 1.61 8.14 -2.39 -0.02 1.59 15 28 H 0.06 1.89 7.66 -2.39 -0.02 1.88 15 29 H 0.07 2.46 7.16 -2.39 -0.02 2.44 15 Total: -1.00 -62.92 239.15 5.78 -57.14 By element: Atomic # 1 Polarization: -5.27 SS G_CDS: 1.13 Total: -4.13 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 3.98 Total: 4.13 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -1.36 Total: -105.40 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -62.92 5.78 -57.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606248320.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.219 kcal (2) G-P(sol) polarization free energy of solvation -62.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds