Wall clock time and date at job start Mon Mar 30 2020 02:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35075 * 127.22813 * 2 1 4 4 N 1.35894 * 107.38068 * 179.97438 * 3 2 1 5 5 C 1.46500 * 124.85835 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47473 * 84.99872 * 5 4 3 7 7 C 1.53006 * 109.47249 * 324.99573 * 5 4 3 8 8 N 1.28468 * 110.28103 * 0.26451 * 4 3 2 9 9 C 1.32765 * 109.93037 * 359.56087 * 8 4 3 10 10 C 1.41429 * 126.56715 * 180.17064 * 9 8 4 11 11 H 1.07996 * 119.99366 * 180.29885 * 10 9 8 12 12 C 1.39850 * 120.00317 * 0.30408 * 10 9 8 13 13 N 1.30895 * 119.99803 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 119.99987 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47496 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47071 * 120.00185 * 14 12 10 17 17 H 1.48500 * 109.47039 * 239.99806 * 14 12 10 18 18 H 1.08995 * 109.47162 * 90.02618 * 1 2 3 19 19 H 1.09003 * 109.46933 * 210.02144 * 1 2 3 20 20 H 1.08999 * 109.47118 * 330.02282 * 1 2 3 21 21 H 1.08005 * 126.30632 * 0.02562 * 3 2 1 22 22 H 1.08998 * 109.46845 * 205.00421 * 5 4 3 23 23 H 1.09002 * 109.47153 * 59.99757 * 6 5 4 24 24 H 1.09001 * 109.46832 * 299.99948 * 6 5 4 25 25 H 1.09004 * 109.47261 * 179.97438 * 6 5 4 26 26 H 1.08993 * 109.46955 * 180.02562 * 7 5 4 27 27 H 1.09000 * 109.47050 * 300.00351 * 7 5 4 28 28 H 1.09001 * 109.47002 * 60.00085 * 7 5 4 29 29 H 0.96998 * 119.99822 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.0755 0.0000 4 7 3.6024 0.6141 0.0006 5 6 4.7981 1.4606 0.0013 6 6 5.1410 1.8577 1.4385 7 6 4.5321 2.7198 -0.8261 8 7 3.6121 -0.6705 -0.0046 9 6 2.3675 -1.1325 0.0007 10 6 1.9728 -2.4907 0.0009 11 1 0.9240 -2.7481 0.0006 12 6 2.9407 -3.5001 0.0015 13 7 4.2119 -3.1880 0.0014 14 14 2.4194 -5.2938 0.0025 15 1 0.9368 -5.3785 0.0018 16 1 2.9536 -5.9652 -1.2096 17 1 2.9535 -5.9638 1.2154 18 1 -0.3633 -0.0005 -1.0276 19 1 -0.3633 -0.8898 0.5142 20 1 -0.3633 0.8902 0.5135 21 1 2.0180 2.1113 0.0004 22 1 5.6329 0.9104 -0.4327 23 1 5.3306 0.9606 2.0280 24 1 4.3061 2.4079 1.8724 25 1 6.0310 2.4871 1.4390 26 1 5.4219 3.3493 -0.8259 27 1 4.2878 2.4369 -1.8500 28 1 3.6972 3.2700 -0.3922 29 1 4.8832 -3.8881 0.0015 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000669381850.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:59 Heat of formation + Delta-G solvation = 60.638168 kcal Electronic energy + Delta-G solvation = -12201.252653 eV Core-core repulsion = 10125.729772 eV Total energy + Delta-G solvation = -2075.522881 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.40272 -35.08986 -32.86358 -31.10486 -28.65531 -27.03025 -25.78272 -25.21734 -21.22585 -19.22381 -18.39935 -16.47988 -15.63738 -14.62820 -14.35711 -13.72638 -13.07461 -12.58379 -12.49898 -12.05347 -11.97481 -11.72281 -11.54435 -11.09422 -11.06258 -10.78829 -10.62160 -10.53373 -10.17514 -9.63233 -9.06591 -8.20752 -7.25931 -7.07644 -6.14827 -3.98111 3.21775 3.31400 3.36460 3.62452 4.08395 4.31194 4.52330 5.12644 5.38566 5.55519 5.76388 5.81470 5.87039 5.98679 6.12472 6.18498 6.31318 6.41963 6.56082 6.64952 6.72231 6.96214 7.39498 7.55061 7.66387 8.01044 8.52900 8.85965 9.17092 9.42955 10.48442 10.83933 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.042741 B = 0.011907 C = 0.009848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.955998 B = 2350.947198 C = 2842.447137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C -0.267 4.267 3 C -0.044 4.044 4 N -0.329 5.329 5 C 0.159 3.841 6 C -0.159 4.159 7 C -0.158 4.158 8 N -0.328 5.328 9 C 0.193 3.807 10 C -0.447 4.447 11 H 0.077 0.923 12 C 0.071 3.929 13 N -0.785 5.785 14 Si 0.900 3.100 15 H -0.265 1.265 16 H -0.280 1.280 17 H -0.280 1.280 18 H 0.040 0.960 19 H 0.054 0.946 20 H 0.036 0.964 21 H 0.135 0.865 22 H 0.092 0.908 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.076 7.832 0.213 7.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.280 4.280 3 C -0.189 4.189 4 N -0.113 5.113 5 C 0.055 3.945 6 C -0.217 4.217 7 C -0.216 4.216 8 N -0.159 5.159 9 C 0.043 3.957 10 C -0.486 4.486 11 H 0.095 0.905 12 C -0.145 4.145 13 N -0.415 5.415 14 Si 0.726 3.274 15 H -0.189 1.189 16 H -0.206 1.206 17 H -0.206 1.206 18 H 0.059 0.941 19 H 0.073 0.927 20 H 0.055 0.945 21 H 0.153 0.847 22 H 0.110 0.890 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.587 7.562 0.209 7.729 hybrid contribution -0.976 -0.523 0.018 1.107 sum 0.612 7.039 0.227 7.069 Atomic orbital electron populations 1.19697 0.91604 0.99893 0.99417 1.20306 0.95163 0.93621 1.18871 1.21964 0.86060 0.97794 1.13038 1.45500 1.03337 1.05357 1.57139 1.20852 0.87250 0.90245 0.96113 1.22181 1.01060 1.01924 0.96549 1.22120 1.02119 0.96859 1.00503 1.74700 1.22453 0.88225 1.30507 1.19236 0.86633 0.93169 0.96678 1.18518 0.93461 0.87813 1.48801 0.90531 1.25720 0.94684 1.00087 0.94055 1.69997 1.00276 1.33149 1.38053 0.86405 0.79558 0.83564 0.77867 1.18926 1.20562 1.20563 0.94091 0.92725 0.94506 0.84723 0.89014 0.91715 0.92623 0.91900 0.91350 0.91991 0.92089 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.00 10.27 36.00 0.37 -0.63 15 2 C -0.27 -6.72 6.26 -104.21 -0.65 -7.37 15 3 C -0.04 -1.01 10.49 -16.88 -0.18 -1.19 15 4 N -0.33 -7.87 3.24 -54.68 -0.18 -8.05 15 5 C 0.16 2.92 3.80 -67.93 -0.26 2.66 15 6 C -0.16 -2.54 9.52 37.16 0.35 -2.18 15 7 C -0.16 -2.24 8.81 37.16 0.33 -1.92 15 8 N -0.33 -9.49 10.24 32.34 0.33 -9.16 15 9 C 0.19 5.64 6.78 -84.71 -0.57 5.07 15 10 C -0.45 -13.10 9.22 -37.76 -0.35 -13.44 15 11 H 0.08 2.13 7.54 -52.49 -0.40 1.73 15 12 C 0.07 2.02 5.49 -17.35 -0.10 1.93 15 13 N -0.79 -23.23 11.97 55.54 0.67 -22.57 15 14 Si 0.90 20.77 29.56 -169.99 -5.02 15.74 15 15 H -0.27 -5.96 7.11 56.52 0.40 -5.55 15 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 18 H 0.04 0.79 8.14 -51.93 -0.42 0.37 15 19 H 0.05 1.13 7.79 -51.93 -0.40 0.73 15 20 H 0.04 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.14 2.54 7.17 -52.48 -0.38 2.16 15 22 H 0.09 1.75 8.14 -51.93 -0.42 1.33 15 23 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 28 H 0.06 0.82 7.06 -51.93 -0.37 0.45 15 29 H 0.26 7.19 8.30 -40.82 -0.34 6.85 15 LS Contribution 249.97 15.07 3.77 3.77 Total: -1.00 -33.01 249.97 -5.55 -38.56 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -4.06 Total: -1.21 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -1.06 Total: -17.08 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.82 Total: -39.78 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -33.01 -5.55 -38.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000669381850.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.200 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds