Wall clock time and date at job start Mon Mar 30 2020 02:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35075 * 127.22813 * 2 1 4 4 N 1.35894 * 107.38068 * 179.97438 * 3 2 1 5 5 C 1.46500 * 124.85835 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47473 * 84.99872 * 5 4 3 7 7 C 1.53006 * 109.47249 * 324.99573 * 5 4 3 8 8 N 1.28468 * 110.28103 * 0.26451 * 4 3 2 9 9 C 1.32765 * 109.93037 * 359.56087 * 8 4 3 10 10 C 1.41429 * 126.56715 * 180.17064 * 9 8 4 11 11 H 1.07996 * 119.99366 * 180.29885 * 10 9 8 12 12 C 1.39850 * 120.00317 * 0.30408 * 10 9 8 13 13 N 1.30895 * 119.99803 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 119.99987 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47496 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47071 * 120.00185 * 14 12 10 17 17 H 1.48500 * 109.47039 * 239.99806 * 14 12 10 18 18 H 1.08995 * 109.47162 * 90.02618 * 1 2 3 19 19 H 1.09003 * 109.46933 * 210.02144 * 1 2 3 20 20 H 1.08999 * 109.47118 * 330.02282 * 1 2 3 21 21 H 1.08005 * 126.30632 * 0.02562 * 3 2 1 22 22 H 1.08998 * 109.46845 * 205.00421 * 5 4 3 23 23 H 1.09002 * 109.47153 * 59.99757 * 6 5 4 24 24 H 1.09001 * 109.46832 * 299.99948 * 6 5 4 25 25 H 1.09004 * 109.47261 * 179.97438 * 6 5 4 26 26 H 1.08993 * 109.46955 * 180.02562 * 7 5 4 27 27 H 1.09000 * 109.47050 * 300.00351 * 7 5 4 28 28 H 1.09001 * 109.47002 * 60.00085 * 7 5 4 29 29 H 0.96998 * 119.99822 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.0755 0.0000 4 7 3.6024 0.6141 0.0006 5 6 4.7981 1.4606 0.0013 6 6 5.1410 1.8577 1.4385 7 6 4.5321 2.7198 -0.8261 8 7 3.6121 -0.6705 -0.0046 9 6 2.3675 -1.1325 0.0007 10 6 1.9728 -2.4907 0.0009 11 1 0.9240 -2.7481 0.0006 12 6 2.9407 -3.5001 0.0015 13 7 4.2119 -3.1880 0.0014 14 14 2.4194 -5.2938 0.0025 15 1 0.9368 -5.3785 0.0018 16 1 2.9536 -5.9652 -1.2096 17 1 2.9535 -5.9638 1.2154 18 1 -0.3633 -0.0005 -1.0276 19 1 -0.3633 -0.8898 0.5142 20 1 -0.3633 0.8902 0.5135 21 1 2.0180 2.1113 0.0004 22 1 5.6329 0.9104 -0.4327 23 1 5.3306 0.9606 2.0280 24 1 4.3061 2.4079 1.8724 25 1 6.0310 2.4871 1.4390 26 1 5.4219 3.3493 -0.8259 27 1 4.2878 2.4369 -1.8500 28 1 3.6972 3.2700 -0.3922 29 1 4.8832 -3.8881 0.0015 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000669381850.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:58 Heat of formation + Delta-G solvation = 39.177825 kcal Electronic energy + Delta-G solvation = -12202.183243 eV Core-core repulsion = 10125.729772 eV Total energy + Delta-G solvation = -2076.453472 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.28847 -36.66030 -34.88145 -32.86580 -30.60624 -28.33046 -27.53980 -27.09677 -22.95691 -21.06003 -20.21567 -18.49853 -17.33561 -16.51562 -16.02313 -15.27271 -14.84950 -14.31457 -14.01014 -13.57278 -13.33315 -13.26197 -13.03786 -12.86769 -12.74767 -12.39412 -12.28375 -12.19460 -11.89170 -11.56257 -11.10098 -10.22340 -9.29925 -8.95604 -8.23815 -6.13968 1.39517 1.41874 1.57705 1.82709 2.34971 2.44996 2.50563 3.67430 3.79527 4.09455 4.21114 4.33480 4.62457 4.68555 4.76584 4.84120 4.89149 4.94189 5.11075 5.15499 5.26402 5.30188 5.40453 5.58585 5.80762 6.03861 6.51388 6.95040 7.09122 7.31439 8.47635 8.77198 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.042741 B = 0.011907 C = 0.009848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.955998 B = 2350.947198 C = 2842.447137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.299 4.299 3 C -0.029 4.029 4 N -0.333 5.333 5 C 0.141 3.859 6 C -0.148 4.148 7 C -0.146 4.146 8 N -0.369 5.369 9 C 0.146 3.854 10 C -0.482 4.482 11 H 0.078 0.922 12 C 0.019 3.981 13 N -0.829 5.829 14 Si 0.982 3.018 15 H -0.255 1.255 16 H -0.273 1.273 17 H -0.273 1.273 18 H 0.050 0.950 19 H 0.043 0.957 20 H 0.069 0.931 21 H 0.182 0.818 22 H 0.073 0.927 23 H 0.029 0.971 24 H 0.064 0.936 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.417 9.335 0.250 9.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.311 4.311 3 C -0.174 4.174 4 N -0.118 5.118 5 C 0.040 3.960 6 C -0.206 4.206 7 C -0.203 4.203 8 N -0.201 5.201 9 C -0.005 4.005 10 C -0.521 4.521 11 H 0.096 0.904 12 C -0.194 4.194 13 N -0.460 5.460 14 Si 0.804 3.196 15 H -0.179 1.179 16 H -0.198 1.198 17 H -0.198 1.198 18 H 0.069 0.931 19 H 0.062 0.938 20 H 0.088 0.912 21 H 0.199 0.801 22 H 0.091 0.909 23 H 0.048 0.952 24 H 0.083 0.917 25 H 0.123 0.877 26 H 0.125 0.875 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.096 9.085 0.245 9.154 hybrid contribution -0.756 -0.831 0.007 1.123 sum 0.340 8.254 0.253 8.265 Atomic orbital electron populations 1.19701 0.88938 1.00950 1.00347 1.20858 0.97415 0.92976 1.19822 1.22543 0.85127 0.99382 1.10331 1.46012 1.05497 1.04525 1.55753 1.21373 0.85070 0.91075 0.98490 1.22106 1.03299 1.01082 0.94145 1.22071 1.04569 0.94944 0.98754 1.74551 1.23251 0.91066 1.31224 1.19749 0.87990 0.94594 0.98132 1.18893 0.93918 0.89059 1.50204 0.90401 1.26687 0.94453 1.05141 0.93114 1.70139 1.01560 1.34845 1.39409 0.85168 0.79505 0.76847 0.78105 1.17891 1.19811 1.19815 0.93126 0.93823 0.91233 0.80066 0.90886 0.95174 0.91712 0.87677 0.87528 0.93214 0.90599 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.66 10.27 71.23 0.73 -0.93 15 2 C -0.30 -14.97 6.26 -19.60 -0.12 -15.09 15 3 C -0.03 -1.27 10.49 83.34 0.87 -0.40 15 4 N -0.33 -15.88 3.24 -326.91 -1.06 -16.94 15 5 C 0.14 5.02 3.80 44.99 0.17 5.19 15 6 C -0.15 -4.45 9.52 71.98 0.69 -3.77 15 7 C -0.15 -3.64 8.81 71.98 0.63 -3.01 15 8 N -0.37 -22.03 10.24 -51.60 -0.53 -22.55 15 9 C 0.15 8.78 6.78 40.78 0.28 9.06 15 10 C -0.48 -29.21 9.22 23.45 0.22 -28.99 15 11 H 0.08 4.47 7.54 -2.91 -0.02 4.45 15 12 C 0.02 1.08 5.49 85.22 0.47 1.55 15 13 N -0.83 -50.87 11.97 21.81 0.26 -50.61 15 14 Si 0.98 43.69 29.56 68.60 2.03 45.72 15 15 H -0.26 -10.80 7.11 99.48 0.71 -10.10 15 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 17 H -0.27 -11.71 7.11 99.48 0.71 -11.01 15 18 H 0.05 1.89 8.14 -2.39 -0.02 1.87 15 19 H 0.04 1.80 7.79 -2.39 -0.02 1.78 15 20 H 0.07 2.28 8.14 -2.39 -0.02 2.26 15 21 H 0.18 6.06 7.17 -2.91 -0.02 6.04 15 22 H 0.07 2.82 8.14 -2.39 -0.02 2.80 15 23 H 0.03 1.09 8.14 -2.39 -0.02 1.07 15 24 H 0.06 1.82 8.14 -2.39 -0.02 1.80 15 25 H 0.10 2.25 8.14 -2.38 -0.02 2.23 15 26 H 0.11 1.88 8.14 -2.39 -0.02 1.86 15 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 15 28 H 0.08 1.69 7.06 -2.39 -0.02 1.67 15 29 H 0.27 15.07 8.30 -92.71 -0.77 14.30 15 Total: -1.00 -75.15 249.97 5.75 -69.39 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 1.12 Total: 11.39 kcal Atomic # 6 Polarization: -40.32 SS G_CDS: 3.93 Total: -36.39 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -1.33 Total: -90.11 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -75.15 5.75 -69.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000669381850.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.570 kcal (2) G-P(sol) polarization free energy of solvation -75.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds