Wall clock time and date at job start Mon Mar 30 2020 02:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46897 * 111.00442 * 2 1 4 4 C 1.50703 * 109.47275 * 66.04350 * 3 2 1 5 5 H 1.08002 * 119.99495 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00142 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99877 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99911 * 0.02562 * 6 4 3 9 9 H 1.48495 * 109.47272 * 89.99936 * 8 6 4 10 10 H 1.48497 * 109.47020 * 210.00136 * 8 6 4 11 11 H 1.48503 * 109.47222 * 330.00019 * 8 6 4 12 12 C 1.46903 * 110.99589 * 236.04398 * 2 1 3 13 13 C 1.47199 * 112.85018 * 62.74653 * 12 2 1 14 14 N 3.45475 * 87.70455 * 274.28109 * 2 1 3 15 15 C 1.53784 * 113.61794 * 291.54405 * 12 2 1 16 16 C 1.53955 * 87.02220 * 220.05235 * 15 12 2 17 17 C 1.53782 * 87.11158 * 25.36363 * 16 15 12 18 18 H 1.08997 * 109.47128 * 178.09311 * 1 2 3 19 19 H 1.09002 * 109.46823 * 58.09669 * 1 2 3 20 20 H 1.08997 * 109.46476 * 298.10085 * 1 2 3 21 21 H 1.08998 * 109.47012 * 186.04958 * 3 2 1 22 22 H 1.08999 * 109.46946 * 306.04790 * 3 2 1 23 23 H 0.96998 * 119.99735 * 180.02562 * 7 6 4 24 24 H 1.09000 * 113.61175 * 334.57168 * 15 12 2 25 25 H 1.09000 * 113.61373 * 105.46657 * 15 12 2 26 26 H 1.09003 * 113.53353 * 270.81244 * 16 15 12 27 27 H 1.09001 * 113.74119 * 139.94408 * 16 15 12 28 28 H 1.09003 * 113.61572 * 220.09381 * 17 16 15 29 29 H 1.08997 * 113.69597 * 89.19738 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6371 2.0471 1.2984 5 1 1.0747 1.5112 2.0487 6 6 2.0270 3.3495 1.5284 7 7 1.7145 3.9390 2.6618 8 14 2.9991 4.2765 0.2303 9 1 2.0617 4.9802 -0.6814 10 1 3.8858 5.2681 0.8902 11 1 3.8225 3.3181 -0.5499 12 6 1.9954 -0.7661 -1.1376 13 6 1.6203 -0.1882 -2.4384 14 7 1.3307 0.2577 -3.4423 15 6 1.7331 -2.2780 -1.0365 16 6 3.1539 -2.4804 -1.5938 17 6 3.4929 -1.0951 -1.0185 18 1 -0.3633 -1.0271 -0.0342 19 1 -0.3633 0.5431 -0.8725 20 1 -0.3632 0.4841 0.9065 21 1 3.0798 1.3442 -0.1083 22 1 1.5612 1.9273 -0.8309 23 1 1.9886 4.8553 2.8234 24 1 1.6110 -2.6324 -0.0129 25 1 0.9468 -2.6303 -1.7040 26 1 3.1924 -2.5225 -2.6824 27 1 3.6995 -3.2959 -1.1190 28 1 4.1254 -0.4939 -1.6718 29 1 3.8532 -1.1241 0.0098 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685968108.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:05 Heat of formation + Delta-G solvation = 55.923442 kcal Electronic energy + Delta-G solvation = -12224.260319 eV Core-core repulsion = 10148.532992 eV Total energy + Delta-G solvation = -2075.727327 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.75347 -35.51094 -35.07959 -32.34786 -28.21720 -26.59786 -25.36172 -23.59911 -21.04059 -20.63643 -17.09125 -16.36311 -15.51501 -14.70244 -14.57650 -14.03495 -13.53011 -13.25041 -12.71929 -12.42598 -12.26219 -12.09613 -11.79590 -11.43788 -11.27706 -10.99265 -10.68845 -10.66199 -10.32490 -9.97762 -9.82520 -9.36658 -8.63359 -7.83278 -6.10815 -4.09063 2.93347 2.98529 3.26074 3.33547 3.36243 4.08249 4.37866 4.52495 4.70725 4.83864 4.97854 5.21380 5.29450 5.74497 5.89746 5.94100 5.96438 6.06223 6.12194 6.24525 6.40843 6.59210 6.74288 6.84485 7.45155 7.66006 7.77875 7.84748 8.54359 8.96525 9.50414 11.01889 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.042755 B = 0.011651 C = 0.011028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.733720 B = 2402.679896 C = 2538.464871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.489 5.489 3 C 0.155 3.845 4 C -0.511 4.511 5 H 0.084 0.916 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.870 3.130 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.267 1.267 12 C 0.156 3.844 13 C 0.211 3.789 14 N -0.444 5.444 15 C -0.108 4.108 16 C -0.145 4.145 17 C -0.108 4.108 18 H 0.055 0.945 19 H 0.015 0.985 20 H 0.087 0.913 21 H 0.035 0.965 22 H -0.015 1.015 23 H 0.265 0.735 24 H 0.109 0.891 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.278 -11.495 -5.798 13.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.211 5.211 3 C 0.029 3.971 4 C -0.550 4.550 5 H 0.102 0.898 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.697 3.303 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.191 1.191 12 C 0.061 3.939 13 C -0.110 4.110 14 N -0.120 5.120 15 C -0.146 4.146 16 C -0.182 4.182 17 C -0.147 4.147 18 H 0.074 0.926 19 H 0.033 0.967 20 H 0.106 0.894 21 H 0.053 0.947 22 H 0.003 0.997 23 H 0.075 0.925 24 H 0.127 0.873 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.006 -10.848 -6.749 12.933 hybrid contribution 0.255 1.130 -1.058 1.569 sum 2.261 -9.719 -7.807 12.669 Atomic orbital electron populations 1.22337 0.87557 1.00141 1.01936 1.62733 1.08153 1.17370 1.32878 1.20309 0.95773 0.83530 0.97473 1.20947 1.36025 0.97321 1.00660 0.89782 1.24848 0.95622 0.97287 0.95207 1.69875 1.46613 1.13286 1.23760 0.86944 0.80805 0.80319 0.82255 1.20350 1.20886 1.19133 1.20230 0.98635 0.94763 0.80239 1.30045 0.92931 0.93268 0.94711 1.81083 1.09157 1.09145 1.12636 1.23024 0.97224 0.91307 1.03089 1.22878 0.96988 0.97972 1.00410 1.23000 0.92462 0.95737 1.03489 0.92595 0.96664 0.89414 0.94700 0.99733 0.92539 0.87274 0.91416 0.90581 0.90249 0.91344 0.86954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 8.94 60.07 0.54 1.06 15 2 N -0.49 -9.56 4.65 -230.90 -1.07 -10.64 15 3 C 0.16 3.68 3.29 -4.98 -0.02 3.66 15 4 C -0.51 -14.12 9.09 -34.44 -0.31 -14.43 15 5 H 0.08 2.48 7.34 -52.49 -0.39 2.10 15 6 C 0.07 2.07 5.47 -17.82 -0.10 1.98 15 7 N -0.90 -27.03 13.96 55.43 0.77 -26.25 15 8 Si 0.87 21.62 27.47 -169.99 -4.67 16.95 15 9 H -0.28 -6.95 7.11 56.52 0.40 -6.54 15 10 H -0.28 -6.91 7.11 56.52 0.40 -6.50 15 11 H -0.27 -6.39 6.54 56.52 0.37 -6.02 15 12 C 0.16 2.52 0.54 -133.57 -0.07 2.45 15 13 C 0.21 3.84 12.37 -20.76 -0.26 3.58 15 14 N -0.44 -8.84 18.54 42.15 0.78 -8.06 15 15 C -0.11 -1.29 6.58 -25.83 -0.17 -1.46 15 16 C -0.14 -1.55 7.80 -25.83 -0.20 -1.76 15 17 C -0.11 -1.48 6.59 -25.91 -0.17 -1.65 15 18 H 0.06 0.83 7.43 -51.93 -0.39 0.45 15 19 H 0.01 0.29 7.55 -51.93 -0.39 -0.10 15 20 H 0.09 1.75 6.91 -51.93 -0.36 1.39 15 21 H 0.04 0.83 6.46 -51.93 -0.34 0.49 15 22 H -0.02 -0.38 7.07 -51.93 -0.37 -0.75 15 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 15 24 H 0.11 1.22 8.14 -51.93 -0.42 0.80 15 25 H 0.07 0.76 8.08 -51.93 -0.42 0.34 15 26 H 0.08 0.80 8.13 -51.93 -0.42 0.38 15 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 15 28 H 0.07 0.95 8.08 -51.93 -0.42 0.53 15 29 H 0.11 1.53 8.14 -51.93 -0.42 1.10 15 LS Contribution 245.83 15.07 3.70 3.70 Total: -1.00 -30.64 245.83 -5.16 -35.81 By element: Atomic # 1 Polarization: -1.01 SS G_CDS: -3.92 Total: -4.93 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -0.76 Total: -6.58 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.48 Total: -44.95 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.64 -5.16 -35.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685968108.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.730 kcal (2) G-P(sol) polarization free energy of solvation -30.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds