Wall clock time and date at job start Mon Mar 30 2020 02:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46897 * 111.00442 * 2 1 4 4 C 1.50703 * 109.47275 * 66.04350 * 3 2 1 5 5 H 1.08002 * 119.99495 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00142 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99877 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99911 * 0.02562 * 6 4 3 9 9 H 1.48495 * 109.47272 * 89.99936 * 8 6 4 10 10 H 1.48497 * 109.47020 * 210.00136 * 8 6 4 11 11 H 1.48503 * 109.47222 * 330.00019 * 8 6 4 12 12 C 1.46903 * 110.99589 * 236.04398 * 2 1 3 13 13 C 1.47199 * 112.85018 * 62.74653 * 12 2 1 14 14 N 3.45475 * 87.70455 * 274.28109 * 2 1 3 15 15 C 1.53784 * 113.61794 * 291.54405 * 12 2 1 16 16 C 1.53955 * 87.02220 * 220.05235 * 15 12 2 17 17 C 1.53782 * 87.11158 * 25.36363 * 16 15 12 18 18 H 1.08997 * 109.47128 * 178.09311 * 1 2 3 19 19 H 1.09002 * 109.46823 * 58.09669 * 1 2 3 20 20 H 1.08997 * 109.46476 * 298.10085 * 1 2 3 21 21 H 1.08998 * 109.47012 * 186.04958 * 3 2 1 22 22 H 1.08999 * 109.46946 * 306.04790 * 3 2 1 23 23 H 0.96998 * 119.99735 * 180.02562 * 7 6 4 24 24 H 1.09000 * 113.61175 * 334.57168 * 15 12 2 25 25 H 1.09000 * 113.61373 * 105.46657 * 15 12 2 26 26 H 1.09003 * 113.53353 * 270.81244 * 16 15 12 27 27 H 1.09001 * 113.74119 * 139.94408 * 16 15 12 28 28 H 1.09003 * 113.61572 * 220.09381 * 17 16 15 29 29 H 1.08997 * 113.69597 * 89.19738 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6371 2.0471 1.2984 5 1 1.0747 1.5112 2.0487 6 6 2.0270 3.3495 1.5284 7 7 1.7145 3.9390 2.6618 8 14 2.9991 4.2765 0.2303 9 1 2.0617 4.9802 -0.6814 10 1 3.8858 5.2681 0.8902 11 1 3.8225 3.3181 -0.5499 12 6 1.9954 -0.7661 -1.1376 13 6 1.6203 -0.1882 -2.4384 14 7 1.3307 0.2577 -3.4423 15 6 1.7331 -2.2780 -1.0365 16 6 3.1539 -2.4804 -1.5938 17 6 3.4929 -1.0951 -1.0185 18 1 -0.3633 -1.0271 -0.0342 19 1 -0.3633 0.5431 -0.8725 20 1 -0.3632 0.4841 0.9065 21 1 3.0798 1.3442 -0.1083 22 1 1.5612 1.9273 -0.8309 23 1 1.9886 4.8553 2.8234 24 1 1.6110 -2.6324 -0.0129 25 1 0.9468 -2.6303 -1.7040 26 1 3.1924 -2.5225 -2.6824 27 1 3.6995 -3.2959 -1.1190 28 1 4.1254 -0.4939 -1.6718 29 1 3.8532 -1.1241 0.0098 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685968108.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:05 Heat of formation + Delta-G solvation = 34.654639 kcal Electronic energy + Delta-G solvation = -12225.182604 eV Core-core repulsion = 10148.532992 eV Total energy + Delta-G solvation = -2076.649612 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.99343 -36.96521 -36.61384 -34.43298 -30.11162 -27.93097 -26.49379 -25.19575 -22.70640 -21.84779 -19.12419 -17.70527 -16.85584 -16.58005 -15.74746 -15.64149 -15.19810 -14.80229 -14.40911 -14.00338 -13.82599 -13.47097 -13.18413 -13.01527 -12.81852 -12.48610 -12.33249 -11.91898 -11.73331 -11.61286 -11.27565 -11.15274 -10.82904 -9.47482 -8.31596 -6.33891 1.28348 1.30804 1.39560 1.53997 1.55567 2.28993 2.76036 3.01176 3.15699 3.62747 3.70808 3.93483 4.26828 4.53105 4.54215 4.78954 4.86754 4.89973 4.96124 5.09091 5.12146 5.18207 5.22917 5.45090 5.52555 5.86532 6.14909 6.37789 6.50699 6.73079 7.29275 8.84404 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.042755 B = 0.011651 C = 0.011028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.733720 B = 2402.679896 C = 2538.464871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.492 5.492 3 C 0.167 3.833 4 C -0.512 4.512 5 H 0.053 0.947 6 C 0.018 3.982 7 N -0.940 5.940 8 Si 0.929 3.071 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.251 1.251 12 C 0.135 3.865 13 C 0.224 3.776 14 N -0.479 5.479 15 C -0.095 4.095 16 C -0.125 4.125 17 C -0.113 4.113 18 H 0.096 0.904 19 H 0.001 0.999 20 H 0.062 0.938 21 H 0.040 0.960 22 H -0.032 1.032 23 H 0.268 0.732 24 H 0.123 0.877 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.293 -13.257 -6.888 15.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.214 5.214 3 C 0.040 3.960 4 C -0.551 4.551 5 H 0.071 0.929 6 C -0.180 4.180 7 N -0.581 5.581 8 Si 0.753 3.247 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.175 1.175 12 C 0.041 3.959 13 C -0.096 4.096 14 N -0.156 5.156 15 C -0.134 4.134 16 C -0.163 4.163 17 C -0.152 4.152 18 H 0.115 0.885 19 H 0.020 0.980 20 H 0.081 0.919 21 H 0.058 0.942 22 H -0.014 1.014 23 H 0.077 0.923 24 H 0.141 0.859 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.127 0.873 28 H 0.082 0.918 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.024 -12.637 -7.849 15.180 hybrid contribution -0.121 1.624 -0.667 1.760 sum 2.902 -11.013 -8.516 14.221 Atomic orbital electron populations 1.22324 0.87103 1.02200 0.99998 1.62636 1.08617 1.14960 1.35182 1.20014 0.95928 0.85601 0.94464 1.21190 1.34908 0.97429 1.01530 0.92918 1.25644 0.96867 0.98389 0.97134 1.70003 1.48357 1.13888 1.25837 0.85991 0.79617 0.79347 0.79727 1.20600 1.19877 1.17471 1.20814 1.00708 0.96410 0.77959 1.30446 0.91906 0.92405 0.94830 1.81090 1.10444 1.10151 1.13950 1.23096 0.98707 0.87164 1.04435 1.22821 0.95851 0.96832 1.00747 1.23118 0.90376 0.97743 1.03915 0.88535 0.98016 0.91901 0.94191 1.01416 0.92328 0.85912 0.90101 0.90136 0.87269 0.91775 0.86752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.14 8.94 127.69 1.14 2.28 15 2 N -0.49 -18.66 4.65 -884.44 -4.11 -22.77 15 3 C 0.17 7.85 3.29 85.56 0.28 8.13 15 4 C -0.51 -28.75 9.09 25.60 0.23 -28.51 15 5 H 0.05 3.22 7.34 -2.91 -0.02 3.20 15 6 C 0.02 1.04 5.47 84.65 0.46 1.50 15 7 N -0.94 -57.80 13.96 21.45 0.30 -57.50 15 8 Si 0.93 44.52 27.47 68.60 1.88 46.40 15 9 H -0.28 -13.47 7.11 99.48 0.71 -12.76 15 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 15 11 H -0.25 -11.28 6.54 99.48 0.65 -10.63 15 12 C 0.14 4.05 0.54 2.25 0.00 4.05 15 13 C 0.22 7.77 12.37 89.44 1.11 8.88 15 14 N -0.48 -18.58 18.54 20.01 0.37 -18.21 15 15 C -0.10 -1.91 6.58 31.18 0.21 -1.71 15 16 C -0.12 -2.15 7.80 31.18 0.24 -1.90 15 17 C -0.11 -2.77 6.59 31.12 0.21 -2.56 15 18 H 0.10 2.65 7.43 -2.39 -0.02 2.63 15 19 H 0.00 0.05 7.55 -2.39 -0.02 0.03 15 20 H 0.06 2.55 6.91 -2.39 -0.02 2.54 15 21 H 0.04 1.84 6.46 -2.39 -0.02 1.83 15 22 H -0.03 -1.60 7.07 -2.39 -0.02 -1.61 15 23 H 0.27 15.39 8.31 -92.71 -0.77 14.62 15 24 H 0.12 2.19 8.14 -2.39 -0.02 2.17 15 25 H 0.08 1.45 8.08 -2.39 -0.02 1.44 15 26 H 0.08 1.36 8.13 -2.39 -0.02 1.34 15 27 H 0.11 1.31 8.14 -2.39 -0.02 1.29 15 28 H 0.06 1.62 8.08 -2.39 -0.02 1.60 15 29 H 0.11 2.78 8.14 -2.39 -0.02 2.77 15 Total: -1.00 -66.78 245.83 3.40 -63.38 By element: Atomic # 1 Polarization: -2.53 SS G_CDS: 1.07 Total: -1.46 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: 3.88 Total: -9.84 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -3.44 Total: -98.48 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Total: -66.78 3.40 -63.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685968108.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.036 kcal (2) G-P(sol) polarization free energy of solvation -66.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds