Wall clock time and date at job start Mon Mar 30 2020 01:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46999 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46942 * 119.99666 * 8 6 4 11 11 H 1.48504 * 109.46979 * 239.99580 * 8 6 4 12 12 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 13 13 O 1.20760 * 119.99840 * 270.00030 * 12 2 1 14 14 C 1.50698 * 120.00160 * 89.99893 * 12 2 1 15 15 H 1.09007 * 115.54814 * 9.33293 * 14 12 2 16 16 C 1.52996 * 117.50035 * 223.62498 * 14 12 2 17 17 C 1.52991 * 117.49741 * 154.99892 * 14 12 2 18 18 C 1.52994 * 138.59390 * 336.60293 * 17 14 12 19 19 C 1.52990 * 138.58794 * 238.37835 * 17 14 12 20 20 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 21 21 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 24 24 H 1.08996 * 117.50192 * 359.97438 * 16 14 12 25 25 H 1.09003 * 117.50049 * 145.02286 * 16 14 12 26 26 H 1.09000 * 117.49114 * 336.59370 * 18 17 14 27 27 H 1.08995 * 117.49863 * 121.61566 * 18 17 14 28 28 H 1.08999 * 117.49992 * 238.38785 * 19 17 14 29 29 H 1.08996 * 117.50273 * 23.41578 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1473 -2.2863 3.6038 10 1 3.1471 -0.1857 4.8161 11 1 1.1676 -1.5866 4.8165 12 6 2.0324 -0.7104 -1.2304 13 8 2.2337 -1.9007 -1.2005 14 6 2.2836 0.0646 -2.4982 15 1 2.2322 1.1494 -2.4041 16 6 1.8023 -0.5546 -3.8119 17 6 3.2972 -0.5112 -3.4890 18 6 4.4975 -1.4599 -3.4817 19 6 4.6053 -0.0949 -4.1645 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7086 1.1614 3.4844 24 1 1.3043 -1.5228 -3.7593 25 1 1.4339 0.1227 -4.5824 26 1 5.0271 -1.5940 -2.5385 27 1 4.4470 -2.3404 -4.1221 28 1 4.6257 -0.0776 -5.2542 29 1 5.2059 0.6688 -3.6707 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705157368.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:54 Heat of formation + Delta-G solvation = 11.526977 kcal Electronic energy + Delta-G solvation = -11950.349928 eV Core-core repulsion = 9840.404675 eV Total energy + Delta-G solvation = -2109.945253 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.14948 -36.84554 -33.71485 -32.25968 -30.43052 -25.16791 -24.61882 -22.23187 -21.33510 -19.43075 -17.92033 -16.23651 -15.45108 -14.85710 -14.79037 -14.42555 -13.58391 -13.16732 -12.64155 -11.99514 -11.49335 -11.42904 -11.30251 -11.03431 -10.71828 -10.61779 -10.25841 -10.07732 -9.93949 -9.78329 -9.69540 -8.95682 -8.44816 -8.15314 -6.02751 -4.07890 2.86250 3.30911 3.38463 3.45892 3.87159 4.11568 4.43299 4.57236 4.94529 5.10470 5.29228 5.49929 5.69238 5.74326 5.82546 5.87745 5.95716 6.07978 6.27709 6.32926 6.61243 6.78436 6.94228 7.05000 7.54375 7.78342 8.02089 8.27431 8.75091 8.97115 9.56777 11.03895 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.051117 B = 0.009621 C = 0.008807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.636112 B = 2909.592440 C = 3178.635744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.005 3.995 3 H 0.048 0.952 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.389 3.611 13 O -0.464 6.464 14 C -0.163 4.163 15 H 0.120 0.880 16 C -0.105 4.105 17 C -0.208 4.208 18 C -0.121 4.121 19 C -0.133 4.133 20 H 0.093 0.907 21 H 0.014 0.986 22 H 0.031 0.969 23 H 0.260 0.740 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.894 0.344 -10.362 10.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.014 4.014 3 H 0.066 0.934 4 C -0.543 4.543 5 H 0.083 0.917 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.265 3.735 13 O -0.337 6.337 14 C -0.182 4.182 15 H 0.138 0.862 16 C -0.142 4.142 17 C -0.208 4.208 18 C -0.158 4.158 19 C -0.170 4.170 20 H 0.111 0.889 21 H 0.033 0.967 22 H 0.050 0.950 23 H 0.070 0.930 24 H 0.116 0.884 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.926 -0.184 -10.202 10.615 hybrid contribution 0.236 -0.174 0.876 0.924 sum 3.161 -0.358 -9.326 9.854 Atomic orbital electron populations 1.21633 0.96022 0.99827 1.01009 1.19170 0.94450 0.97174 0.90591 0.93363 1.21119 1.31237 1.12401 0.89503 0.91663 1.24944 0.95056 0.95012 0.99063 1.69882 1.36942 1.22982 1.23423 0.86444 0.78693 0.79751 0.82647 1.19650 1.20982 1.20939 1.24544 0.71624 0.88523 0.88808 1.90216 1.40317 1.17969 1.85240 1.23040 1.02306 1.00943 0.91878 0.86246 1.22581 0.92898 1.02109 0.96591 1.21162 0.87757 1.07139 1.04785 1.22560 0.98124 0.93065 1.02033 1.22700 0.96613 0.98706 0.98971 0.88866 0.96697 0.95019 0.92967 0.88351 0.88296 0.88526 0.88801 0.88797 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.95 37.16 0.33 -2.74 15 2 C 0.01 0.13 2.57 -92.92 -0.24 -0.11 15 3 H 0.05 1.25 8.12 -51.93 -0.42 0.83 15 4 C -0.50 -14.43 8.32 -34.44 -0.29 -14.71 15 5 H 0.07 1.94 7.14 -52.49 -0.37 1.57 15 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 15 7 N -0.89 -25.39 11.32 55.43 0.63 -24.77 15 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 15 9 H -0.27 -6.66 7.11 56.52 0.40 -6.26 15 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 15 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 12 C 0.39 8.94 5.97 -29.04 -0.17 8.77 15 13 O -0.46 -11.78 16.20 6.00 0.10 -11.69 15 14 C -0.16 -2.97 6.11 -91.78 -0.56 -3.53 15 15 H 0.12 1.99 8.14 -51.92 -0.42 1.57 15 16 C -0.10 -1.61 10.14 -26.73 -0.27 -1.88 15 17 C -0.21 -3.38 5.09 -154.52 -0.79 -4.16 15 18 C -0.12 -1.82 10.53 -26.73 -0.28 -2.10 15 19 C -0.13 -1.73 10.53 -26.73 -0.28 -2.01 15 20 H 0.09 2.44 6.07 -51.93 -0.32 2.12 15 21 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 15 22 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 23 H 0.26 7.03 8.31 -40.82 -0.34 6.69 15 24 H 0.10 1.57 8.14 -51.93 -0.42 1.15 15 25 H 0.10 1.23 8.14 -51.93 -0.42 0.81 15 26 H 0.10 1.55 8.14 -51.93 -0.42 1.13 15 27 H 0.09 1.26 8.14 -51.93 -0.42 0.84 15 28 H 0.09 1.01 8.14 -51.93 -0.42 0.59 15 29 H 0.10 1.17 8.14 -51.93 -0.42 0.75 15 LS Contribution 254.83 15.07 3.84 3.84 Total: -1.00 -30.31 254.83 -7.15 -37.46 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -4.05 Total: -0.78 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -2.64 Total: -20.88 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: 0.63 Total: -24.77 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.10 Total: -11.69 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.31 -7.15 -37.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705157368.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.988 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds