Wall clock time and date at job start Mon Mar 30 2020 01:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46999 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46942 * 119.99666 * 8 6 4 11 11 H 1.48504 * 109.46979 * 239.99580 * 8 6 4 12 12 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 13 13 O 1.20760 * 119.99840 * 270.00030 * 12 2 1 14 14 C 1.50698 * 120.00160 * 89.99893 * 12 2 1 15 15 H 1.09007 * 115.54814 * 9.33293 * 14 12 2 16 16 C 1.52996 * 117.50035 * 223.62498 * 14 12 2 17 17 C 1.52991 * 117.49741 * 154.99892 * 14 12 2 18 18 C 1.52994 * 138.59390 * 336.60293 * 17 14 12 19 19 C 1.52990 * 138.58794 * 238.37835 * 17 14 12 20 20 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 21 21 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 24 24 H 1.08996 * 117.50192 * 359.97438 * 16 14 12 25 25 H 1.09003 * 117.50049 * 145.02286 * 16 14 12 26 26 H 1.09000 * 117.49114 * 336.59370 * 18 17 14 27 27 H 1.08995 * 117.49863 * 121.61566 * 18 17 14 28 28 H 1.08999 * 117.49992 * 238.38785 * 19 17 14 29 29 H 1.08996 * 117.50273 * 23.41578 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1473 -2.2863 3.6038 10 1 3.1471 -0.1857 4.8161 11 1 1.1676 -1.5866 4.8165 12 6 2.0324 -0.7104 -1.2304 13 8 2.2337 -1.9007 -1.2005 14 6 2.2836 0.0646 -2.4982 15 1 2.2322 1.1494 -2.4041 16 6 1.8023 -0.5546 -3.8119 17 6 3.2972 -0.5112 -3.4890 18 6 4.4975 -1.4599 -3.4817 19 6 4.6053 -0.0949 -4.1645 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7086 1.1614 3.4844 24 1 1.3043 -1.5228 -3.7593 25 1 1.4339 0.1227 -4.5824 26 1 5.0271 -1.5940 -2.5385 27 1 4.4470 -2.3404 -4.1221 28 1 4.6257 -0.0776 -5.2542 29 1 5.2059 0.6688 -3.6707 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705157368.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:54 Heat of formation + Delta-G solvation = -5.408507 kcal Electronic energy + Delta-G solvation = -11951.084306 eV Core-core repulsion = 9840.404675 eV Total energy + Delta-G solvation = -2110.679631 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.76871 -38.29049 -35.79879 -33.55626 -32.46433 -27.30306 -26.31685 -23.31382 -23.02547 -20.86056 -19.50215 -18.35241 -17.25152 -16.50661 -16.02233 -15.90056 -15.38153 -14.96852 -14.55218 -13.61209 -13.36309 -13.04215 -12.76628 -12.61591 -12.54912 -12.37964 -12.26057 -12.11788 -11.19403 -11.07167 -11.03354 -10.89372 -10.56788 -9.97284 -8.17919 -6.31202 1.15626 1.36396 1.38361 1.51244 2.38516 2.69013 2.81257 3.10005 3.32371 3.53864 3.89346 4.12899 4.45082 4.59594 4.70280 4.73243 4.76150 4.79995 4.83546 4.98663 5.00862 5.04276 5.12364 5.25551 5.48469 5.66955 5.92616 6.19504 6.73572 6.94753 7.36610 8.87163 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.051117 B = 0.009621 C = 0.008807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.636112 B = 2909.592440 C = 3178.635744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.005 4.005 3 H 0.039 0.961 4 C -0.533 4.533 5 H 0.041 0.959 6 C 0.019 3.981 7 N -0.910 5.910 8 Si 0.956 3.044 9 H -0.279 1.279 10 H -0.271 1.271 11 H -0.274 1.274 12 C 0.390 3.610 13 O -0.499 6.499 14 C -0.185 4.185 15 H 0.134 0.866 16 C -0.082 4.082 17 C -0.230 4.230 18 C -0.139 4.139 19 C -0.098 4.098 20 H 0.071 0.929 21 H 0.048 0.952 22 H 0.019 0.981 23 H 0.266 0.734 24 H 0.088 0.912 25 H 0.137 0.863 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.127 0.873 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.253 0.953 -11.795 12.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.024 4.024 3 H 0.057 0.943 4 C -0.571 4.571 5 H 0.060 0.940 6 C -0.180 4.180 7 N -0.549 5.549 8 Si 0.781 3.219 9 H -0.203 1.203 10 H -0.196 1.196 11 H -0.199 1.199 12 C 0.269 3.731 13 O -0.376 6.376 14 C -0.204 4.204 15 H 0.152 0.848 16 C -0.118 4.118 17 C -0.230 4.230 18 C -0.176 4.176 19 C -0.134 4.134 20 H 0.090 0.910 21 H 0.067 0.933 22 H 0.039 0.961 23 H 0.075 0.925 24 H 0.106 0.894 25 H 0.155 0.845 26 H 0.093 0.907 27 H 0.127 0.873 28 H 0.145 0.855 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.279 0.447 -11.640 12.101 hybrid contribution 0.138 -0.360 1.330 1.384 sum 3.417 0.088 -10.310 10.862 Atomic orbital electron populations 1.21461 0.95198 0.99175 1.01583 1.19200 0.95307 0.96532 0.91376 0.94317 1.21280 1.31949 1.12332 0.91574 0.94039 1.25638 0.95100 0.95699 1.01556 1.69960 1.37043 1.23538 1.24340 0.85537 0.78410 0.78596 0.79326 1.20346 1.19634 1.19950 1.24610 0.70376 0.88127 0.90026 1.90192 1.41992 1.19345 1.86028 1.22783 1.06070 1.00986 0.90552 0.84815 1.22697 0.92347 1.01914 0.94866 1.21463 0.89046 1.08619 1.03879 1.22666 0.97852 0.95081 1.02025 1.22870 0.93174 0.96761 1.00618 0.90999 0.93293 0.96135 0.92495 0.89389 0.84469 0.90689 0.87340 0.85491 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.95 71.98 0.64 -5.02 15 2 C -0.01 -0.27 2.57 -12.28 -0.03 -0.30 15 3 H 0.04 2.06 8.12 -2.39 -0.02 2.04 15 4 C -0.53 -31.41 8.32 25.60 0.21 -31.19 15 5 H 0.04 2.58 7.14 -2.91 -0.02 2.56 15 6 C 0.02 1.10 5.30 84.65 0.45 1.55 15 7 N -0.91 -52.06 11.32 21.45 0.24 -51.82 15 8 Si 0.96 45.20 29.54 68.60 2.03 47.23 15 9 H -0.28 -13.35 7.11 99.48 0.71 -12.65 15 10 H -0.27 -12.21 7.11 99.48 0.71 -11.51 15 11 H -0.27 -12.50 7.11 99.48 0.71 -11.79 15 12 C 0.39 18.17 5.97 29.10 0.17 18.34 15 13 O -0.50 -26.08 16.20 -1.45 -0.02 -26.10 15 14 C -0.19 -6.52 6.11 -11.54 -0.07 -6.59 15 15 H 0.13 4.24 8.14 -2.38 -0.02 4.22 15 16 C -0.08 -2.29 10.14 30.59 0.31 -1.97 15 17 C -0.23 -6.93 5.09 -52.19 -0.27 -7.20 15 18 C -0.14 -3.98 10.53 30.59 0.32 -3.66 15 19 C -0.10 -2.19 10.53 30.59 0.32 -1.86 15 20 H 0.07 3.80 6.07 -2.39 -0.01 3.79 15 21 H 0.05 1.99 8.14 -2.39 -0.02 1.97 15 22 H 0.02 0.99 8.14 -2.39 -0.02 0.97 15 23 H 0.27 14.28 8.31 -92.71 -0.77 13.51 15 24 H 0.09 2.65 8.14 -2.39 -0.02 2.63 15 25 H 0.14 2.78 8.14 -2.39 -0.02 2.76 15 26 H 0.07 2.44 8.14 -2.39 -0.02 2.42 15 27 H 0.11 2.72 8.14 -2.39 -0.02 2.70 15 28 H 0.13 2.06 8.14 -2.39 -0.02 2.04 15 29 H 0.10 2.17 8.14 -2.39 -0.02 2.15 15 Total: -1.00 -66.23 254.83 5.43 -60.80 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 1.12 Total: 7.80 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 2.07 Total: -37.90 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.24 Total: -51.82 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.02 Total: -26.10 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -66.23 5.43 -60.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705157368.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.387 kcal (2) G-P(sol) polarization free energy of solvation -66.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds