Wall clock time and date at job start Mon Mar 30 2020 02:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34846 * 126.29187 * 2 1 4 4 N 1.36341 * 108.21758 * 179.89909 * 3 2 1 5 5 H 0.97004 * 125.63189 * 180.14441 * 4 3 2 6 6 C 1.36337 * 108.72937 * 0.37252 * 4 3 2 7 7 C 1.50696 * 125.89043 * 179.79700 * 6 4 3 8 8 H 1.08999 * 109.47278 * 144.97905 * 7 6 4 9 9 N 1.46897 * 109.47520 * 24.97096 * 7 6 4 10 10 C 1.50705 * 109.47046 * 264.97263 * 7 6 4 11 11 H 1.07995 * 120.00011 * 0.02562 * 10 7 6 12 12 C 1.37880 * 119.99817 * 180.02562 * 10 7 6 13 13 N 1.31504 * 120.00380 * 359.97438 * 12 10 7 14 14 Si 1.86805 * 119.99451 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47227 * 89.99888 * 14 12 10 16 16 H 1.48502 * 109.46543 * 209.99540 * 14 12 10 17 17 H 1.48499 * 109.47406 * 329.99395 * 14 12 10 18 18 C 1.34849 * 108.21562 * 359.77327 * 6 4 3 19 19 C 1.50706 * 126.28883 * 179.97438 * 18 6 4 20 20 H 1.09002 * 109.47152 * 269.68739 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.68840 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.68821 * 1 2 3 23 23 H 1.08001 * 125.88901 * 0.02562 * 3 2 1 24 24 H 1.00896 * 111.00000 * 300.00000 * 9 7 6 25 25 H 1.00900 * 110.99640 * 63.95365 * 9 7 6 26 26 H 0.97004 * 120.00706 * 180.02562 * 13 12 10 27 27 H 1.08997 * 109.46951 * 270.00103 * 19 18 6 28 28 H 1.09004 * 109.47223 * 30.00098 * 19 18 6 29 29 H 1.08996 * 109.47370 * 149.99843 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3052 1.0869 0.0000 4 7 3.6013 0.6639 0.0023 5 1 4.3831 1.2381 0.0048 6 6 3.6169 -0.6994 -0.0047 7 6 4.8478 -1.5688 -0.0092 8 1 4.6591 -2.4688 0.5759 9 7 5.9722 -0.8289 0.5791 10 6 5.1861 -1.9531 -1.4267 11 1 4.5716 -1.6024 -2.2425 12 6 6.2803 -2.7523 -1.6818 13 7 7.0290 -3.1789 -0.6883 14 14 6.7000 -3.2280 -3.4388 15 1 7.6164 -2.2146 -4.0206 16 1 7.3624 -4.5571 -3.4469 17 1 5.4548 -3.2906 -4.2456 18 6 2.3409 -1.1355 -0.0062 19 6 1.8898 -2.5735 -0.0139 20 1 -0.3633 -0.0056 1.0277 21 1 -0.3633 -0.8872 -0.5187 22 1 -0.3633 0.8928 -0.5090 23 1 1.9747 2.1151 0.0004 24 1 6.1670 0.0104 0.0540 25 1 5.7965 -0.6157 1.5495 26 1 7.7990 -3.7409 -0.8678 27 1 1.7804 -2.9145 -1.0433 28 1 2.6306 -3.1894 0.4961 29 1 0.9323 -2.6567 0.5002 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713727748.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:20 Heat of formation + Delta-G solvation = 11.108424 kcal Electronic energy + Delta-G solvation = -12182.095570 eV Core-core repulsion = 10104.424917 eV Total energy + Delta-G solvation = -2077.670652 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.97269 -36.33582 -33.99909 -33.40853 -31.46229 -28.30547 -27.17728 -26.76183 -23.75556 -20.13446 -19.44376 -18.54359 -18.17937 -16.54056 -16.11815 -15.28852 -14.90966 -14.52161 -14.18499 -13.57110 -13.47561 -13.35167 -13.26366 -13.04934 -12.71801 -12.66553 -12.50936 -12.07453 -11.75760 -11.27930 -10.57412 -9.14206 -9.06356 -8.55568 -7.96922 -6.20754 1.41046 1.42450 1.51574 1.60665 2.15859 2.47894 2.66137 3.24337 4.31315 4.34428 4.47563 4.56935 4.62683 4.83962 4.94886 4.98210 5.04709 5.22953 5.28297 5.33952 5.63921 5.67584 5.75481 6.10998 6.30886 6.46741 6.68787 6.96623 7.04886 7.17830 7.51832 9.03413 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.045570 B = 0.011100 C = 0.010308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.291087 B = 2522.022405 C = 2715.786113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.190 4.190 3 C -0.032 4.032 4 N -0.555 5.555 5 H 0.414 0.586 6 C 0.005 3.995 7 C 0.293 3.707 8 H 0.020 0.980 9 N -0.821 5.821 10 C -0.538 4.538 11 H 0.039 0.961 12 C 0.038 3.962 13 N -0.879 5.879 14 Si 0.947 3.053 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.275 1.275 18 C -0.205 4.205 19 C -0.062 4.062 20 H 0.064 0.936 21 H 0.055 0.945 22 H 0.071 0.929 23 H 0.191 0.809 24 H 0.321 0.679 25 H 0.313 0.687 26 H 0.256 0.744 27 H 0.047 0.953 28 H 0.039 0.961 29 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.886 7.159 1.314 11.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.197 4.197 3 C -0.162 4.162 4 N -0.150 5.150 5 H 0.251 0.749 6 C -0.111 4.111 7 C 0.182 3.818 8 H 0.038 0.962 9 N -0.348 5.348 10 C -0.577 4.577 11 H 0.057 0.943 12 C -0.166 4.166 13 N -0.515 5.515 14 Si 0.773 3.227 15 H -0.202 1.202 16 H -0.207 1.207 17 H -0.199 1.199 18 C -0.212 4.212 19 C -0.120 4.120 20 H 0.083 0.917 21 H 0.074 0.926 22 H 0.090 0.910 23 H 0.208 0.792 24 H 0.133 0.867 25 H 0.124 0.876 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.157 6.486 1.219 10.493 hybrid contribution 0.231 0.566 -0.726 0.949 sum -7.926 7.051 0.493 10.620 Atomic orbital electron populations 1.20056 0.88701 1.02114 1.01610 1.19787 0.96701 0.91901 1.11280 1.21995 0.82337 0.99803 1.12038 1.41753 1.08199 1.05905 1.59160 0.74890 1.21931 0.98580 0.84041 1.06578 1.17379 0.80715 0.89368 0.94325 0.96207 1.58886 1.45215 1.26850 1.03869 1.21035 1.12149 1.32619 0.91903 0.94276 1.25632 0.95883 0.95177 0.99934 1.70205 1.15997 1.33278 1.31978 0.85765 0.78108 0.77627 0.81237 1.20238 1.20703 1.19947 1.19486 0.92314 0.96135 1.13259 1.19924 1.00063 0.91493 1.00499 0.91689 0.92604 0.90964 0.79227 0.86728 0.87608 0.93455 0.93431 0.94175 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.75 10.13 71.24 0.72 -1.03 15 2 C -0.19 -6.53 6.14 -19.99 -0.12 -6.65 15 3 C -0.03 -1.01 11.85 83.21 0.99 -0.02 15 4 N -0.55 -19.66 5.91 -182.78 -1.08 -20.74 15 5 H 0.41 12.68 8.14 -92.71 -0.75 11.93 15 6 C 0.00 0.20 6.02 41.08 0.25 0.45 15 7 C 0.29 14.85 2.80 43.42 0.12 14.97 15 8 H 0.02 1.16 7.29 -2.39 -0.02 1.14 15 9 N -0.82 -38.11 8.42 -174.96 -1.47 -39.58 15 10 C -0.54 -30.15 8.71 25.60 0.22 -29.93 15 11 H 0.04 2.25 7.74 -2.91 -0.02 2.23 15 12 C 0.04 2.11 5.39 84.66 0.46 2.56 15 13 N -0.88 -51.57 12.77 21.45 0.27 -51.30 15 14 Si 0.95 44.33 29.54 68.60 2.03 46.36 15 15 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 17 H -0.27 -12.72 7.11 99.48 0.71 -12.02 15 18 C -0.21 -8.53 6.14 -19.99 -0.12 -8.65 15 19 C -0.06 -2.43 9.91 71.24 0.71 -1.72 15 20 H 0.06 1.51 8.14 -2.39 -0.02 1.49 15 21 H 0.05 1.44 8.03 -2.39 -0.02 1.42 15 22 H 0.07 1.54 8.14 -2.38 -0.02 1.52 15 23 H 0.19 4.26 8.06 -2.91 -0.02 4.24 15 24 H 0.32 13.76 8.16 -89.70 -0.73 13.03 15 25 H 0.31 12.98 9.06 -89.69 -0.81 12.17 15 26 H 0.26 14.36 8.31 -92.71 -0.77 13.59 15 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 28 H 0.04 1.67 7.24 -2.38 -0.02 1.65 15 29 H 0.07 2.29 8.03 -2.39 -0.02 2.27 15 Total: -1.00 -64.70 249.53 1.84 -62.86 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: -1.13 Total: 32.42 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 3.22 Total: -30.02 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -2.28 Total: -111.62 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -64.70 1.84 -62.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713727748.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.971 kcal (2) G-P(sol) polarization free energy of solvation -64.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds