Wall clock time and date at job start Mon Mar 30 2020 02:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34665 * 125.98943 * 2 1 4 4 N 1.36878 * 106.82020 * 179.97438 * 3 2 1 5 5 C 1.46495 * 126.40147 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47342 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.46766 * 300.02460 * 5 4 3 8 8 C 1.50693 * 109.47193 * 60.02370 * 5 4 3 9 9 H 1.08000 * 119.99958 * 354.36630 * 8 5 4 10 10 C 1.37882 * 119.99772 * 174.35970 * 8 5 4 11 11 N 1.31520 * 119.99801 * 156.94334 * 10 8 5 12 12 Si 1.86794 * 120.00508 * 336.94290 * 10 8 5 13 13 H 1.48497 * 109.47526 * 179.97438 * 12 10 8 14 14 H 1.48501 * 109.47195 * 300.00228 * 12 10 8 15 15 H 1.48503 * 109.47027 * 59.99716 * 12 10 8 16 16 C 1.35043 * 107.20202 * 0.26485 * 4 3 2 17 17 C 1.50705 * 125.65342 * 179.71018 * 16 4 3 18 18 N 1.30507 * 108.70196 * 359.56246 * 16 4 3 19 19 H 1.09006 * 109.46910 * 89.99505 * 1 2 3 20 20 H 1.09000 * 109.47593 * 209.99685 * 1 2 3 21 21 H 1.09001 * 109.47063 * 330.00113 * 1 2 3 22 22 H 1.07999 * 126.59241 * 0.03837 * 3 2 1 23 23 H 1.09005 * 109.46694 * 173.21483 * 7 5 4 24 24 H 1.09003 * 109.47051 * 293.21441 * 7 5 4 25 25 H 1.08998 * 109.46916 * 53.21605 * 7 5 4 26 26 H 0.97000 * 119.99682 * 354.92591 * 11 10 8 27 27 H 1.09004 * 109.46584 * 90.00050 * 17 16 4 28 28 H 1.08998 * 109.47590 * 209.99954 * 17 16 4 29 29 H 1.09003 * 109.46831 * 330.00827 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2984 1.0896 0.0000 4 7 3.5913 0.6402 0.0006 5 6 4.7996 1.4684 0.0013 6 1 5.6804 0.8262 0.0012 7 6 4.8127 2.3523 -1.2475 8 6 4.8120 2.3378 1.2322 9 1 3.9598 2.3465 1.8956 10 6 5.9113 3.1218 1.5113 11 7 5.7840 4.1844 2.2759 12 14 7.5813 2.6750 0.8038 13 1 8.5899 3.6697 1.2493 14 1 7.9745 1.3239 1.2782 15 1 7.5069 2.6765 -0.6794 16 6 3.5449 -0.7095 -0.0050 17 6 4.7386 -1.6294 -0.0128 18 7 2.2952 -1.0853 0.0005 19 1 -0.3633 0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5138 22 1 1.9751 2.1201 0.0006 23 1 5.6461 3.0525 -1.1883 24 1 4.9253 1.7276 -2.1336 25 1 3.8763 2.9065 -1.3102 26 1 4.9057 4.4584 2.5830 27 1 5.0296 -1.8555 1.0131 28 1 4.4816 -2.5539 -0.5297 29 1 5.5681 -1.1439 -0.5271 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715090707.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:35 Heat of formation + Delta-G solvation = 22.403773 kcal Electronic energy + Delta-G solvation = -12262.782997 eV Core-core repulsion = 10185.602148 eV Total energy + Delta-G solvation = -2077.180849 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.94671 -36.95182 -34.41618 -33.18053 -31.35151 -29.83421 -27.08273 -26.47176 -23.23919 -21.32658 -20.46674 -19.61507 -17.47977 -16.51634 -15.64942 -15.38073 -14.88074 -14.77953 -14.20850 -14.05112 -13.96210 -13.57105 -13.36062 -13.22917 -12.81499 -12.76103 -12.50959 -12.04111 -11.77992 -11.35442 -10.90542 -10.57893 -10.31642 -9.05210 -8.88750 -6.55979 1.26962 1.44766 1.51191 1.68717 2.15038 2.19433 2.42160 2.86315 3.60408 4.00240 4.08250 4.36306 4.44227 4.49168 4.60659 4.63805 4.72466 4.82893 4.89015 4.98392 5.09190 5.17376 5.19316 5.48287 5.80064 5.86754 5.99112 6.26175 6.59623 7.21005 7.24556 8.44274 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.045240 B = 0.012220 C = 0.010781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.777724 B = 2290.765903 C = 2596.658355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.035 4.035 3 C -0.062 4.062 4 N -0.429 5.429 5 C 0.232 3.768 6 H 0.067 0.933 7 C -0.151 4.151 8 C -0.630 4.630 9 H 0.017 0.983 10 C 0.001 3.999 11 N -0.915 5.915 12 Si 1.070 2.930 13 H -0.284 1.284 14 H -0.256 1.256 15 H -0.235 1.235 16 C 0.176 3.824 17 C -0.063 4.063 18 N -0.525 5.525 19 H 0.077 0.923 20 H 0.068 0.932 21 H 0.075 0.925 22 H 0.160 0.840 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.044 0.956 26 H 0.256 0.744 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.219 -7.146 -7.436 10.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.165 4.165 3 C -0.198 4.198 4 N -0.108 5.108 5 C 0.130 3.870 6 H 0.085 0.915 7 C -0.210 4.210 8 C -0.668 4.668 9 H 0.035 0.965 10 C -0.201 4.201 11 N -0.547 5.547 12 Si 0.888 3.112 13 H -0.210 1.210 14 H -0.181 1.181 15 H -0.159 1.159 16 C -0.086 4.086 17 C -0.121 4.121 18 N -0.247 5.247 19 H 0.096 0.904 20 H 0.086 0.914 21 H 0.094 0.906 22 H 0.177 0.823 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.122 0.878 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.239 -7.400 -7.413 10.477 hybrid contribution -1.756 1.049 0.706 2.163 sum -1.517 -6.352 -6.707 9.361 Atomic orbital electron populations 1.19986 0.85648 1.02741 1.02717 1.21219 0.97893 0.88267 1.09116 1.22444 0.83962 1.00306 1.13062 1.45745 1.07590 1.07059 1.50444 1.19473 0.82352 0.89598 0.95555 0.91511 1.22349 1.02224 0.99892 0.96490 1.22082 1.05073 1.29205 1.10409 0.96488 1.27225 1.06857 0.91093 0.94941 1.70975 1.26780 1.21986 1.34962 0.83782 0.71308 0.77568 0.78510 1.20977 1.18054 1.15900 1.23941 0.96078 0.82672 1.05918 1.20281 0.90711 0.97112 1.04036 1.70022 1.00435 1.31053 1.23222 0.90428 0.91351 0.90648 0.82262 0.91201 0.92119 0.93671 0.93467 0.90066 0.87815 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.57 10.42 71.24 0.74 -0.83 15 2 C -0.04 -1.41 7.09 41.39 0.29 -1.11 15 3 C -0.06 -2.68 10.41 83.09 0.86 -1.82 15 4 N -0.43 -18.91 2.60 -495.80 -1.29 -20.20 15 5 C 0.23 10.37 2.50 44.25 0.11 10.48 15 6 H 0.07 2.76 5.25 -2.39 -0.01 2.74 15 7 C -0.15 -6.00 9.06 71.98 0.65 -5.35 15 8 C -0.63 -34.32 8.75 25.60 0.22 -34.10 15 9 H 0.02 1.06 7.92 -2.91 -0.02 1.04 15 10 C 0.00 0.03 5.20 84.66 0.44 0.47 15 11 N -0.91 -54.33 13.70 21.45 0.29 -54.03 15 12 Si 1.07 44.23 26.44 68.60 1.81 46.04 15 13 H -0.28 -12.04 7.11 99.48 0.71 -11.34 15 14 H -0.26 -9.67 7.11 99.48 0.71 -8.97 15 15 H -0.24 -8.28 6.14 99.48 0.61 -7.67 15 16 C 0.18 7.18 7.90 138.13 1.09 8.27 15 17 C -0.06 -1.91 10.02 71.24 0.71 -1.20 15 18 N -0.53 -22.15 11.25 -176.28 -1.98 -24.13 15 19 H 0.08 2.00 8.14 -2.38 -0.02 1.98 15 20 H 0.07 1.93 8.14 -2.39 -0.02 1.91 15 21 H 0.07 1.99 8.14 -2.39 -0.02 1.97 15 22 H 0.16 6.63 8.06 -2.91 -0.02 6.60 15 23 H 0.07 2.75 5.47 -2.38 -0.01 2.74 15 24 H 0.06 2.05 8.14 -2.39 -0.02 2.03 15 25 H 0.04 1.83 7.75 -2.39 -0.02 1.81 15 26 H 0.26 15.63 8.73 -92.71 -0.81 14.82 15 27 H 0.08 2.36 8.14 -2.38 -0.02 2.34 15 28 H 0.10 2.62 8.14 -2.39 -0.02 2.60 15 29 H 0.08 2.29 7.09 -2.39 -0.02 2.27 15 Total: -1.00 -65.58 244.81 4.96 -60.62 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.99 Total: 16.89 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 5.13 Total: -25.19 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -2.98 Total: -98.36 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.81 Total: 46.04 kcal Total: -65.58 4.96 -60.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715090707.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.022 kcal (2) G-P(sol) polarization free energy of solvation -65.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds