Wall clock time and date at job start Mon Mar 30 2020 01:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 115.55005 * 2 1 4 4 C 1.53007 * 117.49811 * 214.33585 * 2 1 3 5 5 C 1.52994 * 117.50063 * 145.71555 * 2 1 3 6 6 H 1.09005 * 117.50070 * 214.97530 * 5 2 1 7 7 C 1.53003 * 117.49784 * 359.97438 * 5 2 1 8 8 H 1.08996 * 115.55136 * 34.28148 * 7 5 2 9 9 C 1.53000 * 117.50028 * 248.60765 * 7 5 2 10 10 C 1.52996 * 60.00047 * 252.51143 * 9 7 5 11 11 H 1.09000 * 117.49864 * 252.50984 * 10 9 7 12 12 C 1.50704 * 117.50089 * 107.49316 * 10 9 7 13 13 O 1.21438 * 119.99631 * 321.37309 * 12 10 9 14 14 C 1.41022 * 120.00192 * 141.37974 * 12 10 9 15 15 H 1.07997 * 119.99943 * 353.72441 * 14 12 10 16 16 C 1.40461 * 119.99946 * 173.73568 * 14 12 10 17 17 N 1.30522 * 119.99992 * 6.24556 * 16 14 12 18 18 Si 1.86797 * 119.99818 * 186.25234 * 16 14 12 19 19 H 1.48499 * 109.47262 * 94.98246 * 18 16 14 20 20 H 1.48501 * 109.47271 * 214.97967 * 18 16 14 21 21 H 1.48498 * 109.47445 * 334.97877 * 18 16 14 22 22 H 1.09000 * 109.47259 * 154.27620 * 1 2 3 23 23 H 1.09004 * 109.47071 * 274.27505 * 1 2 3 24 24 H 1.09001 * 109.47203 * 34.27129 * 1 2 3 25 25 H 1.09000 * 117.49536 * 0.02562 * 4 2 1 26 26 H 1.09003 * 117.49535 * 145.01724 * 4 2 1 27 27 H 1.08997 * 117.49875 * 0.02562 * 9 7 5 28 28 H 1.08994 * 117.49967 * 145.01718 * 9 7 5 29 29 H 0.96995 * 119.99687 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1207 -0.7655 5 6 2.2364 -1.1213 0.7644 6 1 3.1716 -0.8757 1.2678 7 6 1.3588 -2.1565 1.4709 8 1 0.4233 -2.4015 0.9680 9 6 1.3595 -2.1571 3.0009 10 6 2.0653 -3.2780 2.2351 11 1 1.5946 -4.2611 2.2350 12 6 3.5723 -3.2785 2.2344 13 8 4.1798 -2.2300 2.1555 14 6 4.2770 -4.4966 2.3253 15 1 3.7417 -5.4187 2.4972 16 6 5.6753 -4.5106 2.1926 17 7 6.3340 -3.3871 2.1074 18 14 6.5920 -6.1373 2.1379 19 1 6.8082 -6.5363 0.7239 20 1 7.9045 -5.9889 2.8165 21 1 5.7922 -7.1798 2.8297 22 1 -0.3634 -0.9258 -0.4460 23 1 -0.3633 0.0766 1.0248 24 1 -0.3634 0.8492 -0.5787 25 1 1.6111 -1.8577 -1.2695 26 1 3.1715 -0.8746 -1.2687 27 1 1.9849 -1.4198 3.5042 28 1 0.4247 -2.4028 3.5046 29 1 7.2995 -3.3968 2.0153 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717216432.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:14 Heat of formation + Delta-G solvation = -3.244302 kcal Electronic energy + Delta-G solvation = -12069.982936 eV Core-core repulsion = 9959.397152 eV Total energy + Delta-G solvation = -2110.585784 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.105 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.55088 -36.35094 -34.13397 -32.46035 -28.08621 -27.23586 -23.28601 -22.44869 -20.78609 -19.12435 -18.21830 -16.32008 -15.36521 -15.11557 -14.18167 -13.46181 -12.98410 -12.77068 -12.48364 -12.07456 -11.66291 -11.45481 -11.30111 -11.02125 -10.95234 -10.48651 -10.30712 -10.17310 -10.15914 -9.50474 -9.01854 -8.83360 -8.53074 -7.24289 -6.18889 -4.83454 3.06351 3.15914 3.19638 3.97033 4.06448 4.42268 4.89880 5.22913 5.37018 5.49972 5.70398 5.71319 5.90755 6.01572 6.10892 6.16425 6.27193 6.32310 6.36420 6.42351 6.47085 6.76087 6.77951 6.95958 7.04827 7.29067 7.43730 8.16228 8.87177 8.97645 10.39483 10.64839 Molecular weight = 194.10amu Principal moments of inertia in cm(-1) A = 0.058752 B = 0.009643 C = 0.009062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.461267 B = 2902.934204 C = 3089.200733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.173 4.173 3 H 0.094 0.906 4 C -0.176 4.176 5 C -0.106 4.106 6 H 0.147 0.853 7 C -0.108 4.108 8 H 0.088 0.912 9 C -0.164 4.164 10 C -0.179 4.179 11 H 0.093 0.907 12 C 0.393 3.607 13 O -0.538 6.538 14 C -0.529 4.529 15 H 0.068 0.932 16 C 0.084 3.916 17 N -0.740 5.740 18 Si 0.903 3.097 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.262 1.262 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.835 1.408 -2.433 7.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.191 4.191 3 H 0.112 0.888 4 C -0.213 4.213 5 C -0.124 4.124 6 H 0.164 0.836 7 C -0.126 4.126 8 H 0.106 0.894 9 C -0.201 4.201 10 C -0.198 4.198 11 H 0.111 0.889 12 C 0.288 3.712 13 O -0.428 6.428 14 C -0.561 4.561 15 H 0.086 0.914 16 C -0.139 4.139 17 N -0.369 5.369 18 Si 0.728 3.272 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.186 1.186 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.112 0.888 28 H 0.099 0.901 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.421 2.032 -2.484 7.179 hybrid contribution 0.267 -1.084 -0.115 1.123 sum -6.154 0.948 -2.599 6.748 Atomic orbital electron populations 1.21267 0.93852 1.00763 1.01213 1.22337 0.94595 0.94512 1.07657 0.88759 1.22916 1.01631 1.00789 0.95973 1.22417 1.01445 0.95944 0.92564 0.83605 1.21488 0.98642 0.99494 0.93022 0.89408 1.22780 1.01146 1.02555 0.93636 1.23286 1.00184 0.92789 1.03588 0.88886 1.18728 0.84738 0.89839 0.77894 1.90233 1.69162 1.34176 1.49205 1.20751 0.92068 0.95882 1.47355 0.91399 1.25991 0.98162 0.97129 0.92615 1.69953 1.08247 1.27239 1.31447 0.86417 0.79032 0.82711 0.79075 1.19563 1.20268 1.18610 0.93052 0.92514 0.93290 0.89852 0.89544 0.88841 0.90134 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 9.04 37.15 0.34 -1.28 15 2 C -0.17 -2.93 6.41 -90.62 -0.58 -3.51 15 3 H 0.09 1.53 8.14 -51.93 -0.42 1.10 15 4 C -0.18 -3.27 9.90 -26.73 -0.26 -3.53 15 5 C -0.11 -2.22 4.99 -90.62 -0.45 -2.67 15 6 H 0.15 3.65 5.41 -51.93 -0.28 3.37 15 7 C -0.11 -2.18 5.18 -90.62 -0.47 -2.65 15 8 H 0.09 1.58 7.19 -51.93 -0.37 1.20 15 9 C -0.16 -3.28 9.82 -26.73 -0.26 -3.54 15 10 C -0.18 -4.10 6.06 -91.77 -0.56 -4.66 15 11 H 0.09 1.98 8.14 -51.93 -0.42 1.55 15 12 C 0.39 10.99 6.45 -33.25 -0.21 10.78 15 13 O -0.54 -16.40 12.06 5.42 0.07 -16.33 15 14 C -0.53 -14.87 9.22 -37.69 -0.35 -15.21 15 15 H 0.07 1.78 7.86 -52.49 -0.41 1.37 15 16 C 0.08 2.29 5.50 -17.27 -0.09 2.19 15 17 N -0.74 -21.40 11.75 55.57 0.65 -20.75 15 18 Si 0.90 19.67 29.57 -169.99 -5.03 14.64 15 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 21 H -0.26 -5.55 7.11 56.52 0.40 -5.15 15 22 H 0.05 0.71 7.40 -51.93 -0.38 0.32 15 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 15 25 H 0.08 1.45 8.05 -51.93 -0.42 1.03 15 26 H 0.09 1.60 8.14 -51.93 -0.42 1.18 15 27 H 0.09 2.01 8.13 -51.93 -0.42 1.58 15 28 H 0.08 1.36 8.14 -51.93 -0.42 0.94 15 29 H 0.27 7.07 8.29 -40.82 -0.34 6.74 15 LS Contribution 248.43 15.07 3.74 3.74 Total: -1.00 -30.42 248.43 -7.43 -37.85 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -3.96 Total: 4.92 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -2.91 Total: -24.08 kcal Atomic # 7 Polarization: -21.40 SS G_CDS: 0.65 Total: -20.75 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.07 Total: -16.33 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.42 -7.43 -37.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717216432.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.603 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds