Wall clock time and date at job start Mon Mar 30 2020 02:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47039 * 2 1 4 4 C 1.34953 * 126.03659 * 125.25786 * 3 2 1 5 5 C 1.35317 * 107.74177 * 180.14555 * 4 3 2 6 6 C 1.50700 * 126.03483 * 179.87841 * 5 4 3 7 7 C 1.50702 * 109.46869 * 264.68718 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99985 * 180.27663 * 9 7 6 11 11 Si 1.86800 * 119.99777 * 0.28166 * 9 7 6 12 12 H 1.48498 * 109.47109 * 89.99834 * 11 9 7 13 13 H 1.48507 * 109.46754 * 209.99574 * 11 9 7 14 14 H 1.48498 * 109.47278 * 329.99405 * 11 9 7 15 15 C 1.39866 * 107.92259 * 359.60965 * 5 4 3 16 16 C 1.50704 * 125.89909 * 180.25889 * 15 5 4 17 17 N 1.30837 * 108.20197 * 0.24586 * 15 5 4 18 18 H 1.08998 * 109.47444 * 60.00217 * 1 2 3 19 19 H 1.08999 * 109.47503 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.47177 * 300.00344 * 1 2 3 21 21 H 1.08994 * 109.46812 * 239.99704 * 2 1 3 22 22 H 1.09005 * 109.46848 * 119.99977 * 2 1 3 23 23 H 1.07999 * 126.12711 * 0.02562 * 4 3 2 24 24 H 1.09004 * 109.47210 * 144.69011 * 6 5 4 25 25 H 1.08994 * 109.47551 * 24.68664 * 6 5 4 26 26 H 0.96996 * 119.99730 * 180.02562 * 10 9 7 27 27 H 1.08999 * 109.46716 * 90.00412 * 16 15 5 28 28 H 1.08997 * 109.46904 * 210.00862 * 16 15 5 29 29 H 1.08999 * 109.46939 * 330.00716 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8769 1.9198 0.8911 5 6 3.0714 3.2137 0.5461 6 6 3.9548 4.1999 1.2659 7 6 3.1257 5.0031 2.2347 8 1 2.0652 4.8177 2.3209 9 6 3.7221 5.9704 3.0155 10 7 2.9995 6.6676 3.8649 11 14 5.5564 6.2907 2.8669 12 1 5.7953 7.3302 1.8336 13 1 6.0843 6.7606 4.1730 14 1 6.2480 5.0361 2.4759 15 6 2.3126 3.4723 -0.5999 16 6 2.2361 4.7881 -1.3308 17 7 1.6808 2.3746 -0.9282 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8900 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5139 0.8900 23 1 3.3264 1.4100 1.7304 24 1 4.4173 4.8699 0.5410 25 1 4.7309 3.6624 1.8106 26 1 3.4190 7.3484 4.4139 27 1 3.0115 4.8242 -2.0960 28 1 1.2573 4.8866 -1.8002 29 1 2.3842 5.6051 -0.6246 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953052041.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:26 Heat of formation + Delta-G solvation = 62.168844 kcal Electronic energy + Delta-G solvation = -11896.786679 eV Core-core repulsion = 9821.330173 eV Total energy + Delta-G solvation = -2075.456506 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.51235 -34.64351 -32.94018 -30.87708 -30.73531 -27.44015 -26.62776 -23.03616 -21.88181 -19.84275 -18.51895 -16.67555 -16.19579 -14.99664 -14.25855 -13.69997 -13.62074 -13.12484 -12.59552 -12.54081 -12.12576 -11.84790 -11.72697 -11.41158 -11.31879 -11.20519 -10.59525 -10.33320 -10.00373 -9.59779 -9.24105 -8.50497 -8.49241 -7.35937 -5.98525 -3.95591 2.55866 3.07338 3.34244 3.41823 3.45358 3.63040 4.49232 4.77027 5.10040 5.25436 5.33235 5.45910 5.52977 5.66266 5.85768 5.98332 6.17334 6.22399 6.42798 6.51313 6.72960 6.84479 7.14437 7.40337 7.55343 7.72836 7.84149 8.45170 8.63907 9.09161 9.63384 11.14983 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.049493 B = 0.009447 C = 0.009048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.605109 B = 2963.182431 C = 3093.836054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.139 3.861 3 N -0.388 5.388 4 C 0.029 3.971 5 C -0.176 4.176 6 C 0.053 3.947 7 C -0.505 4.505 8 H 0.070 0.930 9 C 0.066 3.934 10 N -0.905 5.905 11 Si 0.877 3.123 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.265 1.265 15 C 0.075 3.925 16 C -0.069 4.069 17 N -0.312 5.312 18 H 0.068 0.932 19 H 0.067 0.933 20 H 0.060 0.940 21 H 0.074 0.926 22 H 0.089 0.911 23 H 0.164 0.836 24 H 0.021 0.979 25 H 0.021 0.979 26 H 0.262 0.738 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.407 -10.501 -7.293 12.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.017 3.983 3 N -0.173 5.173 4 C -0.114 4.114 5 C -0.186 4.186 6 C 0.014 3.986 7 C -0.543 4.543 8 H 0.089 0.911 9 C -0.135 4.135 10 N -0.544 5.544 11 Si 0.704 3.296 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.190 1.190 15 C -0.091 4.091 16 C -0.128 4.128 17 N -0.136 5.136 18 H 0.087 0.913 19 H 0.086 0.914 20 H 0.079 0.921 21 H 0.092 0.908 22 H 0.107 0.893 23 H 0.182 0.818 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.243 -11.072 -7.955 13.690 hybrid contribution 1.429 0.490 0.805 1.712 sum 0.186 -10.582 -7.150 12.773 Atomic orbital electron populations 1.22046 0.94472 1.02038 1.03623 1.21442 0.95581 0.78547 1.02732 1.48294 1.37124 1.09477 1.22390 1.22202 0.97274 0.95257 0.96641 1.20366 1.05595 0.94376 0.98301 1.18088 0.93715 0.92358 0.94419 1.21055 0.96530 1.17341 1.19413 0.91146 1.25014 0.97790 0.95685 0.94973 1.69914 1.35863 1.23810 1.24850 0.86824 0.86361 0.79032 0.77383 1.20202 1.21505 1.18973 1.22206 0.96072 0.94637 0.96153 1.20140 1.01440 0.91829 0.99401 1.77037 1.24897 0.97076 1.14591 0.91324 0.91393 0.92062 0.90820 0.89306 0.81840 0.96096 0.96109 0.92811 0.91582 0.91982 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 10.10 37.16 0.38 -1.55 15 2 C 0.14 1.75 7.23 -4.04 -0.03 1.72 15 3 N -0.39 -6.99 3.68 -61.37 -0.23 -7.22 15 4 C 0.03 0.57 11.36 -17.22 -0.20 0.37 15 5 C -0.18 -3.92 5.29 -105.05 -0.56 -4.48 15 6 C 0.05 1.28 4.16 -29.03 -0.12 1.16 15 7 C -0.51 -14.48 9.65 -34.44 -0.33 -14.81 15 8 H 0.07 2.24 7.98 -52.49 -0.42 1.82 15 9 C 0.07 1.92 5.47 -17.82 -0.10 1.82 15 10 N -0.90 -27.96 13.96 55.43 0.77 -27.18 15 11 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 15 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 15 14 H -0.27 -6.22 6.54 56.52 0.37 -5.85 15 15 C 0.08 1.59 7.22 -82.41 -0.59 0.99 15 16 C -0.07 -1.26 10.22 36.01 0.37 -0.89 15 17 N -0.31 -6.33 12.42 33.67 0.42 -5.92 15 18 H 0.07 0.91 8.14 -51.93 -0.42 0.48 15 19 H 0.07 0.59 8.14 -51.93 -0.42 0.16 15 20 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 21 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.09 0.90 8.07 -51.93 -0.42 0.48 15 23 H 0.16 2.72 8.06 -52.49 -0.42 2.29 15 24 H 0.02 0.50 7.52 -51.93 -0.39 0.11 15 25 H 0.02 0.50 7.19 -51.93 -0.37 0.13 15 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 15 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 28 H 0.06 1.02 8.14 -51.93 -0.42 0.59 15 29 H 0.09 1.76 7.96 -51.93 -0.41 1.35 15 LS Contribution 252.91 15.07 3.81 3.81 Total: -1.00 -32.80 252.91 -5.22 -38.02 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -4.14 Total: -2.67 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -1.18 Total: -15.66 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.97 Total: -40.32 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -32.80 -5.22 -38.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953052041.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.186 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds