Wall clock time and date at job start Mon Mar 30 2020 02:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47039 * 2 1 4 4 C 1.34953 * 126.03659 * 125.25786 * 3 2 1 5 5 C 1.35317 * 107.74177 * 180.14555 * 4 3 2 6 6 C 1.50700 * 126.03483 * 179.87841 * 5 4 3 7 7 C 1.50702 * 109.46869 * 264.68718 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99985 * 180.27663 * 9 7 6 11 11 Si 1.86800 * 119.99777 * 0.28166 * 9 7 6 12 12 H 1.48498 * 109.47109 * 89.99834 * 11 9 7 13 13 H 1.48507 * 109.46754 * 209.99574 * 11 9 7 14 14 H 1.48498 * 109.47278 * 329.99405 * 11 9 7 15 15 C 1.39866 * 107.92259 * 359.60965 * 5 4 3 16 16 C 1.50704 * 125.89909 * 180.25889 * 15 5 4 17 17 N 1.30837 * 108.20197 * 0.24586 * 15 5 4 18 18 H 1.08998 * 109.47444 * 60.00217 * 1 2 3 19 19 H 1.08999 * 109.47503 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.47177 * 300.00344 * 1 2 3 21 21 H 1.08994 * 109.46812 * 239.99704 * 2 1 3 22 22 H 1.09005 * 109.46848 * 119.99977 * 2 1 3 23 23 H 1.07999 * 126.12711 * 0.02562 * 4 3 2 24 24 H 1.09004 * 109.47210 * 144.69011 * 6 5 4 25 25 H 1.08994 * 109.47551 * 24.68664 * 6 5 4 26 26 H 0.96996 * 119.99730 * 180.02562 * 10 9 7 27 27 H 1.08999 * 109.46716 * 90.00412 * 16 15 5 28 28 H 1.08997 * 109.46904 * 210.00862 * 16 15 5 29 29 H 1.08999 * 109.46939 * 330.00716 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8769 1.9198 0.8911 5 6 3.0714 3.2137 0.5461 6 6 3.9548 4.1999 1.2659 7 6 3.1257 5.0031 2.2347 8 1 2.0652 4.8177 2.3209 9 6 3.7221 5.9704 3.0155 10 7 2.9995 6.6676 3.8649 11 14 5.5564 6.2907 2.8669 12 1 5.7953 7.3302 1.8336 13 1 6.0843 6.7606 4.1730 14 1 6.2480 5.0361 2.4759 15 6 2.3126 3.4723 -0.5999 16 6 2.2361 4.7881 -1.3308 17 7 1.6808 2.3746 -0.9282 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8900 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5139 0.8900 23 1 3.3264 1.4100 1.7304 24 1 4.4173 4.8699 0.5410 25 1 4.7309 3.6624 1.8106 26 1 3.4190 7.3484 4.4139 27 1 3.0115 4.8242 -2.0960 28 1 1.2573 4.8866 -1.8002 29 1 2.3842 5.6051 -0.6246 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953052041.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:25 Heat of formation + Delta-G solvation = 40.690288 kcal Electronic energy + Delta-G solvation = -11897.718059 eV Core-core repulsion = 9821.330173 eV Total energy + Delta-G solvation = -2076.387886 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 194.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.01168 -36.04918 -34.90078 -32.64070 -32.16036 -29.08683 -28.15890 -24.68080 -23.36823 -21.39064 -20.05648 -18.87319 -17.56370 -16.35535 -16.13526 -15.13926 -15.02453 -14.83777 -14.19381 -14.05726 -13.73960 -13.27387 -13.02128 -12.91586 -12.78632 -12.61308 -12.26237 -11.98328 -11.89090 -11.55173 -11.14745 -10.70159 -9.98027 -8.96473 -8.21601 -6.24958 1.05706 1.42821 1.43970 1.56441 1.78682 2.00086 2.42708 3.13000 3.65517 4.07532 4.11747 4.18918 4.39551 4.46843 4.75364 4.78293 4.83568 4.87219 4.96460 5.14789 5.19101 5.20726 5.33677 5.64071 5.68439 5.93014 6.32585 6.41036 6.81314 6.91625 7.38239 8.95576 Molecular weight = 194.11amu Principal moments of inertia in cm(-1) A = 0.049493 B = 0.009447 C = 0.009048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.605109 B = 2963.182431 C = 3093.836054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 N -0.380 5.380 4 C 0.040 3.960 5 C -0.224 4.224 6 C 0.064 3.936 7 C -0.509 4.509 8 H 0.019 0.981 9 C 0.005 3.995 10 N -0.956 5.956 11 Si 0.951 3.049 12 H -0.266 1.266 13 H -0.286 1.286 14 H -0.243 1.243 15 C 0.056 3.944 16 C -0.066 4.066 17 N -0.327 5.327 18 H 0.049 0.951 19 H 0.106 0.894 20 H 0.042 0.958 21 H 0.095 0.905 22 H 0.121 0.879 23 H 0.193 0.807 24 H 0.026 0.974 25 H 0.029 0.971 26 H 0.265 0.735 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.016 -12.276 -8.055 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.005 3.995 3 N -0.164 5.164 4 C -0.105 4.105 5 C -0.235 4.235 6 C 0.025 3.975 7 C -0.547 4.547 8 H 0.037 0.963 9 C -0.191 4.191 10 N -0.597 5.597 11 Si 0.775 3.225 12 H -0.191 1.191 13 H -0.212 1.212 14 H -0.167 1.167 15 C -0.109 4.109 16 C -0.125 4.125 17 N -0.151 5.151 18 H 0.068 0.932 19 H 0.124 0.876 20 H 0.061 0.939 21 H 0.113 0.887 22 H 0.139 0.861 23 H 0.210 0.790 24 H 0.044 0.956 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.158 -12.881 -8.748 15.572 hybrid contribution 0.841 0.921 1.052 1.632 sum 0.999 -11.960 -7.697 14.258 Atomic orbital electron populations 1.22014 0.93911 1.03947 1.01741 1.21998 0.96092 0.76007 1.05386 1.48779 1.35843 1.10784 1.21012 1.22599 0.96405 0.94664 0.96816 1.20375 1.07656 0.95555 0.99874 1.17872 0.93550 0.92472 0.93581 1.21240 0.94736 1.18176 1.20551 0.96261 1.25988 1.03557 0.95221 0.94333 1.70081 1.38470 1.24880 1.26251 0.85641 0.79355 0.79915 0.77636 1.19056 1.21228 1.16659 1.22558 0.96149 0.95774 0.96409 1.20144 1.03085 0.90011 0.99250 1.76978 1.25074 0.97439 1.15635 0.93172 0.87593 0.93906 0.88696 0.86119 0.79011 0.95589 0.95304 0.92600 0.89177 0.90707 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 10.10 71.98 0.73 -2.63 15 2 C 0.12 2.74 7.23 86.38 0.62 3.37 15 3 N -0.38 -12.95 3.68 -348.06 -1.28 -14.23 15 4 C 0.04 1.50 11.36 83.54 0.95 2.45 15 5 C -0.22 -9.89 5.29 -20.14 -0.11 -9.99 15 6 C 0.06 3.08 4.16 29.10 0.12 3.20 15 7 C -0.51 -29.89 9.65 25.60 0.25 -29.64 15 8 H 0.02 1.28 7.98 -2.91 -0.02 1.26 15 9 C 0.01 0.29 5.47 84.66 0.46 0.76 15 10 N -0.96 -60.61 13.96 21.45 0.30 -60.31 15 11 Si 0.95 43.98 27.47 68.60 1.88 45.86 15 12 H -0.27 -11.76 7.11 99.48 0.71 -11.06 15 13 H -0.29 -13.03 7.11 99.48 0.71 -12.32 15 14 H -0.24 -10.31 6.54 99.48 0.65 -9.66 15 15 C 0.06 2.36 7.22 43.10 0.31 2.67 15 16 C -0.07 -2.40 10.22 71.24 0.73 -1.68 15 17 N -0.33 -12.96 12.42 -47.38 -0.59 -13.55 15 18 H 0.05 1.25 8.14 -2.39 -0.02 1.23 15 19 H 0.11 1.44 8.14 -2.39 -0.02 1.42 15 20 H 0.04 1.06 8.14 -2.38 -0.02 1.04 15 21 H 0.09 1.76 8.14 -2.39 -0.02 1.74 15 22 H 0.12 1.92 8.07 -2.38 -0.02 1.91 15 23 H 0.19 5.83 8.06 -2.91 -0.02 5.81 15 24 H 0.03 1.21 7.52 -2.38 -0.02 1.20 15 25 H 0.03 1.33 7.19 -2.39 -0.02 1.31 15 26 H 0.27 15.65 8.31 -92.71 -0.77 14.88 15 27 H 0.09 2.76 8.14 -2.39 -0.02 2.74 15 28 H 0.07 2.45 8.14 -2.39 -0.02 2.43 15 29 H 0.07 2.71 7.96 -2.39 -0.02 2.69 15 Total: -1.00 -72.57 252.91 5.44 -67.13 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 1.06 Total: 6.59 kcal Atomic # 6 Polarization: -35.56 SS G_CDS: 4.06 Total: -31.50 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -1.57 Total: -88.09 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.86 kcal Total: -72.57 5.44 -67.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953052041.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.820 kcal (2) G-P(sol) polarization free energy of solvation -72.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds