Wall clock time and date at job start Mon Mar 30 2020 02:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30864 * 125.81759 * 2 1 4 4 N 1.40071 * 108.36313 * 179.97438 * 3 2 1 5 5 C 1.46491 * 126.07440 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46957 * 90.02374 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48496 * 109.47341 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46983 * 120.00379 * 10 8 6 13 13 H 1.48503 * 109.47491 * 240.00192 * 10 8 6 14 14 C 1.35978 * 107.85310 * 0.23133 * 4 3 2 15 15 C 1.50701 * 126.21923 * 179.75218 * 14 4 3 16 16 C 1.35704 * 107.55553 * 359.63198 * 14 4 3 17 17 N 1.40798 * 126.06851 * 180.13817 * 16 14 4 18 18 H 1.09001 * 109.47124 * 90.01932 * 1 2 3 19 19 H 1.09000 * 109.46868 * 210.01967 * 1 2 3 20 20 H 1.08997 * 109.46626 * 330.01737 * 1 2 3 21 21 H 1.09004 * 109.47166 * 330.02640 * 5 4 3 22 22 H 1.08994 * 109.47507 * 210.02346 * 5 4 3 23 23 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 24 24 H 1.08994 * 109.47490 * 89.99658 * 15 14 4 25 25 H 1.09007 * 109.46842 * 209.99675 * 15 14 4 26 26 H 1.09000 * 109.46939 * 329.98942 * 15 14 4 27 27 H 0.97000 * 119.99673 * 180.29373 * 17 16 14 28 28 H 0.96995 * 119.99915 * 0.29656 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2729 1.0612 0.0000 4 7 3.6091 0.6410 0.0006 5 6 4.7871 1.5118 0.0003 6 6 5.1911 1.8109 1.4210 7 1 4.6270 1.3937 2.2421 8 6 6.2846 2.6121 1.6727 9 7 6.9718 3.1198 0.6729 10 14 6.7899 2.9765 3.4337 11 1 5.8607 2.2909 4.3673 12 1 8.1728 2.4863 3.6634 13 1 6.7384 4.4417 3.6704 14 6 3.6186 -0.7187 -0.0043 15 6 4.8405 -1.6007 -0.0108 16 6 2.3276 -1.1371 0.0005 17 7 1.8899 -2.4753 0.0006 18 1 -0.3633 -0.0003 -1.0277 19 1 -0.3633 -0.8898 0.5141 20 1 -0.3632 0.8901 0.5136 21 1 4.5502 2.4433 -0.5139 22 1 5.6083 1.0120 -0.5134 23 1 7.7409 3.6838 0.8499 24 1 5.1380 -1.8170 1.0152 25 1 4.6128 -2.5332 -0.5273 26 1 5.6545 -1.0899 -0.5252 27 1 0.9407 -2.6750 0.0000 28 1 2.5375 -3.1974 0.0014 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035728298.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:28 Heat of formation + Delta-G solvation = 60.268339 kcal Electronic energy + Delta-G solvation = -12106.026358 eV Core-core repulsion = 9965.061529 eV Total energy + Delta-G solvation = -2140.964829 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.26528 -34.33628 -33.21229 -32.36934 -29.64023 -28.87616 -25.76665 -25.47747 -22.44947 -19.18074 -18.93715 -16.65968 -15.98587 -15.36841 -14.58561 -14.40578 -13.91471 -12.91382 -12.84461 -12.50397 -12.39520 -11.87716 -11.65769 -11.47755 -11.17094 -10.97366 -10.79320 -10.27338 -10.13668 -9.69119 -9.46069 -8.59865 -8.03991 -6.43084 -6.14744 -4.27396 2.85440 3.22899 3.30577 3.36505 3.64199 3.66753 4.33879 4.68451 5.13202 5.40977 5.50415 5.77000 5.86919 5.98920 6.12385 6.17183 6.24999 6.43970 6.71677 7.10646 7.10697 7.38818 7.72240 7.96306 8.08061 8.28093 8.44391 8.76654 8.86304 9.38563 10.86794 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.047468 B = 0.009822 C = 0.009269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.728209 B = 2850.017584 C = 3019.983685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.000 4.000 3 N -0.278 5.278 4 N -0.323 5.323 5 C 0.262 3.738 6 C -0.532 4.532 7 H 0.064 0.936 8 C 0.064 3.936 9 N -0.893 5.893 10 Si 0.905 3.095 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.281 1.281 14 C 0.009 3.991 15 C -0.071 4.071 16 C 0.032 3.968 17 N -0.881 5.881 18 H 0.063 0.937 19 H 0.062 0.938 20 H 0.066 0.934 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.266 0.734 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.388 0.612 28 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.643 -9.204 -1.281 11.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.166 4.166 3 N -0.105 5.105 4 N -0.109 5.109 5 C 0.145 3.855 6 C -0.571 4.571 7 H 0.082 0.918 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.733 3.267 11 H -0.196 1.196 12 H -0.207 1.207 13 H -0.207 1.207 14 C -0.122 4.122 15 C -0.130 4.130 16 C -0.076 4.076 17 N -0.429 5.429 18 H 0.081 0.919 19 H 0.081 0.919 20 H 0.085 0.915 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.215 0.785 28 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -6.286 -7.588 -1.330 9.943 hybrid contribution 0.341 -0.891 0.949 1.346 sum -5.945 -8.479 -0.380 10.363 Atomic orbital electron populations 1.19907 0.88102 1.02043 1.01559 1.21730 0.96096 0.89889 1.08857 1.77124 0.87802 1.22377 1.23212 1.48984 1.05086 1.03665 1.53140 1.19579 0.78077 0.89199 0.98693 1.21394 1.12850 1.31264 0.91568 0.91777 1.24935 0.95773 0.95146 0.98053 1.69936 1.19144 1.33169 1.30908 0.86313 0.78338 0.78249 0.83845 1.19616 1.20709 1.20655 1.20275 0.94883 0.85876 1.11182 1.20112 0.93848 0.96684 1.02317 1.17160 0.90936 0.85871 1.13658 1.41304 1.08071 1.02146 1.91399 0.91864 0.91925 0.91526 0.93168 0.93200 0.92393 0.91301 0.91894 0.91176 0.78505 0.78561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.29 36.01 0.37 -0.48 15 2 C 0.00 -0.01 7.22 -82.26 -0.59 -0.60 15 3 N -0.28 -6.69 12.57 33.75 0.42 -6.26 15 4 N -0.32 -7.92 3.63 -57.98 -0.21 -8.13 15 5 C 0.26 6.98 6.02 -5.20 -0.03 6.94 15 6 C -0.53 -15.09 9.39 -34.44 -0.32 -15.42 15 7 H 0.06 1.88 7.81 -52.49 -0.41 1.47 15 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 15 9 N -0.89 -25.63 13.29 55.43 0.74 -24.90 15 10 Si 0.91 21.49 29.54 -169.99 -5.02 16.47 15 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 14 C 0.01 0.20 6.98 -81.66 -0.57 -0.37 15 15 C -0.07 -1.24 9.94 36.01 0.36 -0.88 15 16 C 0.03 0.61 7.17 -83.90 -0.60 0.00 15 17 N -0.88 -12.46 9.19 32.30 0.30 -12.16 15 18 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 19 H 0.06 0.77 7.69 -51.93 -0.40 0.37 15 20 H 0.07 0.97 8.14 -51.93 -0.42 0.55 15 21 H 0.05 1.42 8.14 -51.93 -0.42 1.00 15 22 H 0.05 1.31 7.09 -51.93 -0.37 0.95 15 23 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 24 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 25 H 0.06 0.87 7.62 -51.92 -0.40 0.48 15 26 H 0.07 1.26 7.12 -51.93 -0.37 0.89 15 27 H 0.39 4.57 8.34 -40.82 -0.34 4.23 15 28 H 0.39 4.74 8.22 -40.82 -0.34 4.40 15 LS Contribution 246.76 15.07 3.72 3.72 Total: -1.00 -31.41 246.76 -4.99 -36.40 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -3.44 Total: 3.97 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -1.49 Total: -9.12 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 1.25 Total: -51.44 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.41 -4.99 -36.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035728298.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.667 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds