Wall clock time and date at job start Mon Mar 30 2020 02:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30864 * 125.81759 * 2 1 4 4 N 1.40071 * 108.36313 * 179.97438 * 3 2 1 5 5 C 1.46491 * 126.07440 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46957 * 90.02374 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48496 * 109.47341 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46983 * 120.00379 * 10 8 6 13 13 H 1.48503 * 109.47491 * 240.00192 * 10 8 6 14 14 C 1.35978 * 107.85310 * 0.23133 * 4 3 2 15 15 C 1.50701 * 126.21923 * 179.75218 * 14 4 3 16 16 C 1.35704 * 107.55553 * 359.63198 * 14 4 3 17 17 N 1.40798 * 126.06851 * 180.13817 * 16 14 4 18 18 H 1.09001 * 109.47124 * 90.01932 * 1 2 3 19 19 H 1.09000 * 109.46868 * 210.01967 * 1 2 3 20 20 H 1.08997 * 109.46626 * 330.01737 * 1 2 3 21 21 H 1.09004 * 109.47166 * 330.02640 * 5 4 3 22 22 H 1.08994 * 109.47507 * 210.02346 * 5 4 3 23 23 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 24 24 H 1.08994 * 109.47490 * 89.99658 * 15 14 4 25 25 H 1.09007 * 109.46842 * 209.99675 * 15 14 4 26 26 H 1.09000 * 109.46939 * 329.98942 * 15 14 4 27 27 H 0.97000 * 119.99673 * 180.29373 * 17 16 14 28 28 H 0.96995 * 119.99915 * 0.29656 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2729 1.0612 0.0000 4 7 3.6091 0.6410 0.0006 5 6 4.7871 1.5118 0.0003 6 6 5.1911 1.8109 1.4210 7 1 4.6270 1.3937 2.2421 8 6 6.2846 2.6121 1.6727 9 7 6.9718 3.1198 0.6729 10 14 6.7899 2.9765 3.4337 11 1 5.8607 2.2909 4.3673 12 1 8.1728 2.4863 3.6634 13 1 6.7384 4.4417 3.6704 14 6 3.6186 -0.7187 -0.0043 15 6 4.8405 -1.6007 -0.0108 16 6 2.3276 -1.1371 0.0005 17 7 1.8899 -2.4753 0.0006 18 1 -0.3633 -0.0003 -1.0277 19 1 -0.3633 -0.8898 0.5141 20 1 -0.3632 0.8901 0.5136 21 1 4.5502 2.4433 -0.5139 22 1 5.6083 1.0120 -0.5134 23 1 7.7409 3.6838 0.8499 24 1 5.1380 -1.8170 1.0152 25 1 4.6128 -2.5332 -0.5273 26 1 5.6545 -1.0899 -0.5252 27 1 0.9407 -2.6750 0.0000 28 1 2.5375 -3.1974 0.0014 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035728298.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:28 Heat of formation + Delta-G solvation = 37.688479 kcal Electronic energy + Delta-G solvation = -12107.005494 eV Core-core repulsion = 9965.061529 eV Total energy + Delta-G solvation = -2141.943965 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.88042 -36.09639 -34.86373 -34.09946 -31.29262 -30.36419 -27.56146 -27.06202 -24.36561 -20.73080 -20.52667 -18.79565 -17.65372 -16.66789 -16.45455 -16.03842 -15.54116 -14.52765 -14.42245 -14.00635 -13.92621 -13.39385 -13.23359 -13.11243 -12.81118 -12.72680 -12.57466 -12.25430 -11.88570 -11.32174 -11.22587 -10.73636 -9.76872 -8.38435 -7.77580 -6.50390 1.19275 1.36148 1.37666 1.50725 1.96095 2.13153 2.34997 2.96246 3.41419 3.94404 4.10782 4.34481 4.58109 4.69439 4.76088 4.87478 4.89602 4.93085 5.01784 5.15623 5.49960 5.55427 5.83769 5.89308 6.31775 6.64948 6.93091 7.12457 7.20827 7.45018 8.73781 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.047468 B = 0.009822 C = 0.009269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.728209 B = 2850.017584 C = 3019.983685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.002 3.998 3 N -0.331 5.331 4 N -0.356 5.356 5 C 0.281 3.719 6 C -0.551 4.551 7 H 0.047 0.953 8 C 0.020 3.980 9 N -0.921 5.921 10 Si 0.974 3.026 11 H -0.274 1.274 12 H -0.266 1.266 13 H -0.273 1.273 14 C -0.016 4.016 15 C -0.067 4.067 16 C 0.040 3.960 17 N -0.861 5.861 18 H 0.084 0.916 19 H 0.094 0.906 20 H 0.065 0.935 21 H 0.018 0.982 22 H 0.043 0.957 23 H 0.273 0.727 24 H 0.070 0.930 25 H 0.101 0.899 26 H 0.055 0.945 27 H 0.404 0.596 28 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.482 -10.854 -0.497 13.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.164 4.164 3 N -0.157 5.157 4 N -0.142 5.142 5 C 0.161 3.839 6 C -0.590 4.590 7 H 0.066 0.934 8 C -0.181 4.181 9 N -0.559 5.559 10 Si 0.798 3.202 11 H -0.198 1.198 12 H -0.191 1.191 13 H -0.199 1.199 14 C -0.146 4.146 15 C -0.125 4.125 16 C -0.069 4.069 17 N -0.412 5.412 18 H 0.102 0.898 19 H 0.112 0.888 20 H 0.084 0.916 21 H 0.036 0.964 22 H 0.061 0.939 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.120 0.880 26 H 0.074 0.926 27 H 0.233 0.767 28 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -7.146 -9.287 -0.557 11.731 hybrid contribution 0.487 -0.453 0.652 0.931 sum -6.658 -9.740 0.094 11.799 Atomic orbital electron populations 1.20118 0.84354 1.03607 1.03375 1.22652 0.98347 0.89342 1.06105 1.77040 0.88122 1.24861 1.25686 1.48717 1.04667 1.04696 1.56122 1.19048 0.79041 0.88334 0.97456 1.21501 1.13416 1.32156 0.91888 0.93442 1.25791 0.95394 0.94473 1.02440 1.70023 1.19507 1.33356 1.33033 0.85267 0.78373 0.78233 0.78333 1.19831 1.19060 1.19860 1.20964 0.97115 0.84971 1.11576 1.20191 0.92117 0.97460 1.02735 1.17277 0.90038 0.87734 1.11877 1.41213 1.09431 1.00245 1.90268 0.89790 0.88760 0.91577 0.96427 0.93900 0.91758 0.91168 0.88036 0.92574 0.76667 0.77063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.50 10.29 71.24 0.73 -0.77 15 2 C 0.00 0.09 7.22 43.19 0.31 0.40 15 3 N -0.33 -16.22 12.57 -47.15 -0.59 -16.82 15 4 N -0.36 -17.97 3.63 -337.34 -1.22 -19.19 15 5 C 0.28 15.68 6.02 85.64 0.52 16.19 15 6 C -0.55 -32.28 9.39 25.60 0.24 -32.04 15 7 H 0.05 2.87 7.81 -2.91 -0.02 2.85 15 8 C 0.02 1.10 5.46 84.66 0.46 1.57 15 9 N -0.92 -53.67 13.29 21.45 0.28 -53.39 15 10 Si 0.97 44.22 29.54 68.60 2.03 46.24 15 11 H -0.27 -12.41 7.11 99.48 0.71 -11.70 15 12 H -0.27 -11.35 7.11 99.48 0.71 -10.65 15 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 14 C -0.02 -0.67 6.98 41.33 0.29 -0.38 15 15 C -0.07 -2.27 9.94 71.24 0.71 -1.56 15 16 C 0.04 1.45 7.17 37.59 0.27 1.72 15 17 N -0.86 -21.24 9.19 -51.74 -0.48 -21.72 15 18 H 0.08 1.94 8.14 -2.39 -0.02 1.92 15 19 H 0.09 1.92 7.69 -2.39 -0.02 1.90 15 20 H 0.07 1.79 8.14 -2.39 -0.02 1.78 15 21 H 0.02 1.07 8.14 -2.38 -0.02 1.05 15 22 H 0.04 2.39 7.09 -2.39 -0.02 2.37 15 23 H 0.27 14.75 8.31 -92.70 -0.77 13.98 15 24 H 0.07 2.33 8.14 -2.39 -0.02 2.31 15 25 H 0.10 2.56 7.62 -2.38 -0.02 2.54 15 26 H 0.06 2.03 7.12 -2.39 -0.02 2.02 15 27 H 0.40 7.74 8.34 -92.71 -0.77 6.96 15 28 H 0.40 8.22 8.22 -92.71 -0.76 7.46 15 Total: -1.00 -69.47 246.76 3.19 -66.27 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -0.36 Total: 13.48 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 3.53 Total: -14.88 kcal Atomic # 7 Polarization: -109.11 SS G_CDS: -2.01 Total: -111.11 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -69.47 3.19 -66.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035728298.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.961 kcal (2) G-P(sol) polarization free energy of solvation -69.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds