Wall clock time and date at job start Mon Mar 30 2020 02:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.47373 * 2 1 4 4 C 1.50701 * 109.47268 * 120.00101 * 2 1 3 5 5 H 1.08004 * 120.00164 * 120.00021 * 4 2 1 6 6 C 1.37882 * 119.99769 * 300.00022 * 4 2 1 7 7 N 1.31514 * 119.99964 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99873 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46886 * 60.00165 * 8 6 4 10 10 H 1.48495 * 109.46882 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47198 * 300.00365 * 8 6 4 12 12 N 1.46906 * 109.47041 * 239.99744 * 2 1 3 13 13 C 1.46900 * 110.99983 * 85.00293 * 12 2 1 14 14 C 1.50696 * 109.47455 * 179.97438 * 13 12 2 15 15 C 1.34512 * 125.79090 * 90.01981 * 14 13 12 16 16 C 1.41379 * 106.84332 * 180.02562 * 15 14 13 17 17 C 1.34512 * 106.84086 * 0.02562 * 16 15 14 18 18 O 1.34301 * 125.79037 * 270.02576 * 14 13 12 19 19 H 1.08993 * 109.46982 * 299.99645 * 1 2 3 20 20 H 1.08992 * 109.46817 * 60.00455 * 1 2 3 21 21 H 1.09003 * 109.47065 * 179.97438 * 1 2 3 22 22 H 0.96994 * 119.99755 * 180.02562 * 7 6 4 23 23 H 1.00897 * 111.00421 * 321.04445 * 12 2 1 24 24 H 1.09003 * 109.47076 * 59.99646 * 13 12 2 25 25 H 1.09005 * 109.46634 * 300.00213 * 13 12 2 26 26 H 1.08007 * 126.58064 * 359.97438 * 15 14 13 27 27 H 1.07996 * 126.58354 * 180.02562 * 16 15 14 28 28 H 1.07998 * 125.79383 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3214 -1.1204 4.0080 9 1 3.8064 -1.1209 4.0082 10 1 1.8260 -0.4206 5.2204 11 1 1.8259 -2.5202 4.0077 12 7 2.0197 -0.6926 -1.1995 13 6 2.0825 0.2225 -2.3469 14 6 2.5885 -0.5216 -3.5557 15 6 1.8280 -1.1735 -4.4535 16 6 2.7082 -1.7234 -5.4136 17 6 3.9540 -1.3751 -5.0448 18 8 3.8753 -0.6464 -3.9194 19 1 -0.3633 0.5137 0.8900 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 0.7087 1.1612 3.4843 23 1 1.4496 -1.4980 -1.4100 24 1 2.7589 1.0461 -2.1182 25 1 1.0871 0.6162 -2.5525 26 1 0.7515 -1.2609 -4.4425 27 1 2.4331 -2.3104 -6.2773 28 1 4.8632 -1.6365 -5.5657 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871295.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:35 Heat of formation + Delta-G solvation = -7.175377 kcal Electronic energy + Delta-G solvation = -11876.640264 eV Core-core repulsion = 9700.458104 eV Total energy + Delta-G solvation = -2176.182159 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.39795 -37.95054 -34.79953 -33.77924 -31.95547 -29.23449 -27.25069 -25.62658 -22.62088 -22.16029 -21.36403 -18.75232 -17.89202 -17.07407 -16.69981 -16.11250 -15.38080 -15.00168 -14.63016 -13.94114 -13.67358 -13.58035 -13.45877 -12.97753 -12.77627 -12.73328 -12.27536 -12.15657 -11.89919 -11.10152 -10.79798 -10.48484 -9.42529 -9.03274 -8.09989 -6.21484 0.84958 1.44216 1.45931 1.53816 1.75712 2.19336 2.45100 3.18195 3.66260 3.95856 4.19294 4.24052 4.41046 4.55109 4.73240 4.88380 4.97194 5.06114 5.06537 5.25251 5.37546 5.67375 5.69812 5.79391 6.23845 6.30492 6.58115 6.73284 6.90971 7.48116 8.95184 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.065177 B = 0.007620 C = 0.007171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.498677 B = 3673.596242 C = 3903.671554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.215 3.785 3 H 0.007 0.993 4 C -0.519 4.519 5 H 0.052 0.948 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.687 5.687 13 C 0.137 3.863 14 C -0.018 4.018 15 C -0.216 4.216 16 C -0.223 4.223 17 C -0.047 4.047 18 O -0.195 6.195 19 H 0.064 0.936 20 H 0.030 0.970 21 H 0.033 0.967 22 H 0.262 0.738 23 H 0.335 0.665 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.157 0.843 27 H 0.174 0.826 28 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.797 -3.562 -12.983 13.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.107 3.893 3 H 0.025 0.975 4 C -0.558 4.558 5 H 0.070 0.930 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.318 5.318 13 C 0.008 3.992 14 C -0.069 4.069 15 C -0.236 4.236 16 C -0.242 4.242 17 C -0.114 4.114 18 O -0.091 6.091 19 H 0.083 0.917 20 H 0.049 0.951 21 H 0.052 0.948 22 H 0.071 0.929 23 H 0.152 0.848 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.174 0.826 27 H 0.192 0.808 28 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 2.627 -3.223 -12.510 13.183 hybrid contribution -0.871 -0.194 0.615 1.084 sum 1.755 -3.417 -11.895 12.500 Atomic orbital electron populations 1.22247 0.99424 0.99504 1.00489 1.18996 0.90473 0.92912 0.86951 0.97463 1.21396 1.30712 1.12604 0.91090 0.92963 1.25699 0.95384 0.95874 1.01809 1.69988 1.37805 1.24129 1.24166 0.85558 0.78587 0.78698 0.78431 1.20047 1.20800 1.19638 1.60691 1.58588 1.09501 1.02979 1.20269 0.99099 0.94040 0.85813 1.22485 0.81275 1.04305 0.98799 1.21885 1.01506 1.03277 0.96966 1.22149 0.92443 1.06455 1.03129 1.24866 1.01692 0.97356 0.87512 1.84035 1.28891 1.58151 1.38044 0.91694 0.95078 0.94790 0.92877 0.84766 0.91158 0.91661 0.82563 0.80821 0.74557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.48 8.94 71.98 0.64 -6.83 15 2 C 0.21 10.99 2.57 44.17 0.11 11.10 15 3 H 0.01 0.42 7.80 -2.39 -0.02 0.40 15 4 C -0.52 -29.37 8.84 25.60 0.23 -29.15 15 5 H 0.05 2.99 7.81 -2.91 -0.02 2.97 15 6 C 0.01 0.60 5.30 84.66 0.45 1.05 15 7 N -0.92 -53.11 11.32 21.45 0.24 -52.87 15 8 Si 0.96 44.35 29.54 68.60 2.03 46.37 15 9 H -0.28 -12.52 7.11 99.48 0.71 -11.82 15 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 11 H -0.27 -12.14 7.11 99.48 0.71 -11.44 15 12 N -0.69 -30.14 6.22 -499.46 -3.11 -33.25 15 13 C 0.14 5.09 6.01 85.56 0.51 5.60 15 14 C -0.02 -0.62 6.83 24.83 0.17 -0.45 15 15 C -0.22 -6.17 10.81 22.19 0.24 -5.93 15 16 C -0.22 -5.27 10.91 22.19 0.24 -5.03 15 17 C -0.05 -1.13 12.09 66.97 0.81 -0.32 15 18 O -0.19 -6.46 10.65 -2.47 -0.03 -6.48 15 19 H 0.06 3.45 6.07 -2.39 -0.01 3.43 15 20 H 0.03 1.27 7.45 -2.39 -0.02 1.26 15 21 H 0.03 1.53 8.13 -2.39 -0.02 1.52 15 22 H 0.26 14.39 8.31 -92.71 -0.77 13.62 15 23 H 0.33 13.87 8.46 -89.70 -0.76 13.11 15 24 H 0.07 2.73 8.06 -2.39 -0.02 2.71 15 25 H 0.07 2.23 7.44 -2.38 -0.02 2.22 15 26 H 0.16 3.91 8.06 -2.91 -0.02 3.88 15 27 H 0.17 2.92 8.06 -2.91 -0.02 2.90 15 28 H 0.24 3.32 8.06 -2.91 -0.02 3.30 15 Total: -1.00 -63.02 245.06 2.93 -60.08 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.39 Total: 16.10 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 3.41 Total: -29.96 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -2.86 Total: -86.12 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.03 Total: -6.48 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -63.02 2.93 -60.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871295.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.907 kcal (2) G-P(sol) polarization free energy of solvation -63.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds