Wall clock time and date at job start Mon Mar 30 2020 01:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99842 * 2 1 4 4 H 1.48500 * 109.47227 * 270.00111 * 3 2 1 5 5 H 1.48497 * 109.47076 * 29.99903 * 3 2 1 6 6 H 1.48500 * 109.46955 * 150.00142 * 3 2 1 7 7 C 1.37873 * 120.00339 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99846 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00261 * 180.02562 * 7 2 1 10 10 N 1.46905 * 109.46930 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99463 * 179.97438 * 10 9 7 12 12 C 1.53008 * 109.46729 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.46697 * 180.02562 * 12 11 10 14 14 C 1.34511 * 125.79278 * 90.00315 * 13 12 11 15 15 C 1.41386 * 106.84141 * 180.02562 * 14 13 12 16 16 C 1.34507 * 106.84010 * 0.02562 * 15 14 13 17 17 O 1.34304 * 108.42311 * 359.97438 * 16 15 14 18 18 H 0.97002 * 120.00140 * 0.02562 * 1 2 3 19 19 H 1.08996 * 109.46994 * 59.99975 * 9 7 2 20 20 H 1.08998 * 109.46621 * 299.99661 * 9 7 2 21 21 H 1.00893 * 111.00322 * 56.04653 * 10 9 7 22 22 H 1.09001 * 109.46999 * 60.00464 * 11 10 9 23 23 H 1.08995 * 109.47557 * 300.00047 * 11 10 9 24 24 H 1.08994 * 109.46939 * 60.00146 * 12 11 10 25 25 H 1.09003 * 109.47242 * 299.99732 * 12 11 10 26 26 H 1.07999 * 126.58024 * 359.97438 * 14 13 12 27 27 H 1.08004 * 126.57483 * 179.97438 * 15 14 13 28 28 H 1.08004 * 125.79019 * 180.26381 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5790 -0.0001 11 6 5.4697 -2.6181 -0.0001 12 6 5.9411 -4.0737 0.0004 13 6 7.4475 -4.1138 0.0010 14 6 8.2335 -4.1346 1.0924 15 6 9.5705 -4.1696 0.6337 16 6 9.5215 -4.1676 -0.7105 17 8 8.2331 -4.1340 -1.0882 18 1 -0.4850 0.8401 -0.0004 19 1 3.8745 -0.6807 0.8905 20 1 3.8751 -0.6796 -0.8895 21 1 3.6261 -3.0951 -0.7816 22 1 5.8466 -2.1142 0.8899 23 1 5.8466 -2.1141 -0.8900 24 1 5.5641 -4.5780 -0.8894 25 1 5.5642 -4.5774 0.8906 26 1 7.9062 -4.1253 2.1215 27 1 10.4603 -4.1926 1.2454 28 1 10.3735 -4.1938 -1.3736 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037979064.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:33 Heat of formation + Delta-G solvation = -14.423738 kcal Electronic energy + Delta-G solvation = -11505.441159 eV Core-core repulsion = 9328.944687 eV Total energy + Delta-G solvation = -2176.496472 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.45204 -37.65853 -34.96446 -33.96093 -33.00959 -29.83508 -27.53129 -23.87268 -22.98835 -22.62780 -21.23651 -18.98220 -18.19651 -17.09651 -16.74842 -16.32152 -15.82875 -15.10776 -14.66730 -14.45199 -14.09833 -13.70940 -13.51030 -13.25372 -13.01010 -12.63066 -12.28129 -12.02886 -11.81891 -11.50354 -10.83516 -10.82232 -9.35952 -9.23255 -8.31548 -6.36454 0.81914 1.34090 1.36105 1.47495 1.73076 2.13596 2.33032 3.02246 3.42716 4.01206 4.04769 4.16579 4.22856 4.33670 4.55058 4.72654 4.86486 4.96516 4.97863 5.04864 5.10911 5.28764 5.49818 5.65027 5.89990 6.25046 6.50725 6.61363 6.73569 7.28608 8.85056 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.073363 B = 0.006230 C = 0.005988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.572589 B = 4493.615087 C = 4674.740316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.008 3.992 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.252 1.252 7 C -0.530 4.530 8 H 0.040 0.960 9 C 0.173 3.827 10 N -0.687 5.687 11 C 0.065 3.935 12 C -0.029 4.029 13 C -0.025 4.025 14 C -0.221 4.221 15 C -0.226 4.226 16 C -0.048 4.048 17 O -0.197 6.197 18 H 0.268 0.732 19 H 0.026 0.974 20 H -0.014 1.014 21 H 0.340 0.660 22 H 0.068 0.932 23 H 0.021 0.979 24 H 0.085 0.915 25 H 0.109 0.891 26 H 0.157 0.843 27 H 0.170 0.830 28 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.842 -6.465 -0.494 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.175 1.175 7 C -0.569 4.569 8 H 0.059 0.941 9 C 0.044 3.956 10 N -0.317 5.317 11 C -0.064 4.064 12 C -0.066 4.066 13 C -0.075 4.075 14 C -0.240 4.240 15 C -0.245 4.245 16 C -0.115 4.115 17 O -0.094 6.094 18 H 0.077 0.923 19 H 0.044 0.956 20 H 0.003 0.997 21 H 0.158 0.842 22 H 0.086 0.914 23 H 0.039 0.961 24 H 0.103 0.897 25 H 0.127 0.873 26 H 0.174 0.826 27 H 0.188 0.812 28 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 19.527 -6.418 -0.095 20.555 hybrid contribution 0.103 0.980 -0.690 1.203 sum 19.631 -5.438 -0.785 20.385 Atomic orbital electron populations 1.70046 1.08126 1.28299 1.52152 1.25878 0.95667 1.03311 0.94086 0.85656 0.79319 0.78404 0.79185 1.19131 1.20421 1.17539 1.21337 0.91254 0.93620 1.50656 0.94144 1.19775 0.93855 0.87081 0.94853 1.60382 1.06542 1.14886 1.49931 1.21921 0.88177 0.96115 1.00221 1.20007 0.84509 0.96806 1.05283 1.22556 0.93882 1.06511 0.84548 1.21939 0.93484 1.08611 0.99951 1.22189 0.98360 1.08526 0.95386 1.24812 0.84273 1.05412 0.96965 1.84017 1.17985 1.71629 1.35733 0.92263 0.95577 0.99670 0.84240 0.91388 0.96097 0.89693 0.87296 0.82562 0.81225 0.74648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.50 13.96 21.45 0.30 -59.20 15 2 C 0.01 0.49 5.47 84.65 0.46 0.95 15 3 Si 0.95 44.47 27.47 68.60 1.88 46.36 15 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 6 H -0.25 -11.06 6.54 99.48 0.65 -10.41 15 7 C -0.53 -31.16 9.87 25.60 0.25 -30.90 15 8 H 0.04 2.61 8.06 -2.91 -0.02 2.59 15 9 C 0.17 8.42 4.51 85.56 0.39 8.81 15 10 N -0.69 -28.15 6.49 -517.92 -3.36 -31.52 15 11 C 0.07 2.15 5.67 86.31 0.49 2.64 15 12 C -0.03 -0.77 6.01 29.85 0.18 -0.59 15 13 C -0.02 -0.66 6.57 24.83 0.16 -0.49 15 14 C -0.22 -5.27 10.81 22.19 0.24 -5.03 15 15 C -0.23 -4.49 10.91 22.19 0.24 -4.25 15 16 C -0.05 -0.92 12.09 66.97 0.81 -0.11 15 17 O -0.20 -5.13 10.65 -2.51 -0.03 -5.15 15 18 H 0.27 15.66 8.31 -92.71 -0.77 14.89 15 19 H 0.03 1.28 7.20 -2.39 -0.02 1.26 15 20 H -0.01 -0.68 7.57 -2.39 -0.02 -0.70 15 21 H 0.34 13.42 8.72 -89.70 -0.78 12.64 15 22 H 0.07 2.26 8.14 -2.39 -0.02 2.24 15 23 H 0.02 0.70 8.14 -2.39 -0.02 0.68 15 24 H 0.08 2.15 8.14 -2.39 -0.02 2.13 15 25 H 0.11 2.74 8.14 -2.39 -0.02 2.72 15 26 H 0.16 3.31 8.06 -2.91 -0.02 3.29 15 27 H 0.17 2.40 8.06 -2.91 -0.02 2.38 15 28 H 0.24 2.33 8.06 -2.91 -0.02 2.31 15 Total: -1.00 -67.98 247.83 2.32 -65.66 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.31 Total: 12.83 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 3.22 Total: -28.98 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -3.06 Total: -90.71 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.03 Total: -5.15 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.36 kcal Total: -67.98 2.32 -65.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037979064.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.235 kcal (2) G-P(sol) polarization free energy of solvation -67.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds