Wall clock time and date at job start Mon Mar 30 2020 01:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34519 * 125.79377 * 2 1 4 4 C 1.41385 * 106.83958 * 179.75496 * 3 2 1 5 5 C 1.34512 * 106.84387 * 0.36740 * 4 3 2 6 6 C 1.50699 * 125.78964 * 179.89172 * 5 4 3 7 7 H 1.08996 * 109.46924 * 339.71321 * 6 5 4 8 8 C 1.52997 * 109.47078 * 99.72068 * 6 5 4 9 9 N 1.46506 * 109.46928 * 219.72127 * 6 5 4 10 10 C 1.36929 * 119.99904 * 155.00122 * 9 6 5 11 11 H 1.08004 * 120.00323 * 359.97438 * 10 9 6 12 12 C 1.38815 * 119.99984 * 179.97438 * 10 9 6 13 13 N 1.31622 * 119.99951 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 120.00021 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47254 * 89.99741 * 14 12 10 16 16 H 1.48501 * 109.47458 * 209.99436 * 14 12 10 17 17 H 1.48498 * 109.47288 * 329.99773 * 14 12 10 18 18 O 1.34306 * 108.41845 * 359.63359 * 5 4 3 19 19 H 1.08997 * 109.47466 * 179.97438 * 1 2 3 20 20 H 1.09006 * 109.46412 * 299.99873 * 1 2 3 21 21 H 1.08999 * 109.46833 * 59.99728 * 1 2 3 22 22 H 1.08000 * 126.57599 * 0.02562 * 3 2 1 23 23 H 1.08002 * 126.57687 * 180.24028 * 4 3 2 24 24 H 1.09002 * 109.47153 * 299.99793 * 8 6 5 25 25 H 1.09001 * 109.46832 * 179.97438 * 8 6 5 26 26 H 1.09004 * 109.47261 * 59.99965 * 8 6 5 27 27 H 0.97000 * 120.00117 * 334.99916 * 9 6 5 28 28 H 0.97000 * 120.00124 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2938 1.0911 0.0000 4 6 3.6309 0.6319 0.0058 5 6 3.5814 -0.7123 0.0007 6 6 4.7706 -1.6380 0.0017 7 1 5.6506 -1.0993 -0.3494 8 6 5.0182 -2.1486 1.4226 9 7 4.5065 -2.7731 -0.8861 10 6 5.5493 -3.4553 -1.4538 11 1 6.5664 -3.1564 -1.2474 12 6 5.2991 -4.5311 -2.2946 13 7 6.3014 -5.1866 -2.8407 14 14 3.5400 -5.0478 -2.6521 15 1 3.0428 -4.3182 -3.8462 16 1 3.4962 -6.5093 -2.9114 17 1 2.6824 -4.7265 -1.4832 18 8 2.2924 -1.0895 0.0004 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3632 0.5139 0.8901 21 1 -0.3633 0.5139 -0.8900 22 1 1.9667 2.1204 0.0004 23 1 4.5213 1.2431 0.0110 24 1 5.2147 -1.3041 2.0831 25 1 5.8780 -2.8185 1.4231 26 1 4.1380 -2.6874 1.7736 27 1 3.5930 -3.0414 -1.0717 28 1 6.1266 -5.9386 -3.4279 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037980923.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:07 Heat of formation + Delta-G solvation = 20.255832 kcal Electronic energy + Delta-G solvation = -12107.729697 eV Core-core repulsion = 9932.737044 eV Total energy + Delta-G solvation = -2174.992653 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.22069 -35.77128 -32.84874 -32.38992 -31.04813 -29.05673 -26.08175 -23.68870 -21.40911 -21.17949 -19.55986 -17.95326 -16.06107 -15.78866 -14.70821 -14.35812 -13.50459 -13.21615 -12.94905 -12.90767 -12.52886 -12.44639 -12.29234 -11.79702 -11.66954 -10.95689 -10.84077 -10.63559 -10.13201 -9.63125 -9.52851 -9.00805 -7.91200 -7.33683 -5.79988 -3.16609 2.07829 2.93995 3.27327 3.39094 3.44648 3.45888 4.58611 4.92897 5.14395 5.30195 5.34813 5.46890 5.49942 5.56465 5.72355 5.93923 6.07462 6.12561 6.20888 6.38627 6.49363 6.59114 6.87637 6.89608 7.56482 7.94462 8.38458 9.15656 9.88188 10.07691 11.37724 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.041067 B = 0.011174 C = 0.009515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.645347 B = 2505.164979 C = 2942.098329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.035 4.035 3 C -0.210 4.210 4 C -0.223 4.223 5 C 0.013 3.987 6 C 0.254 3.746 7 H 0.084 0.916 8 C -0.164 4.164 9 N -0.745 5.745 10 C -0.249 4.249 11 H 0.094 0.906 12 C 0.010 3.990 13 N -0.931 5.931 14 Si 0.881 3.119 15 H -0.283 1.283 16 H -0.289 1.289 17 H -0.275 1.275 18 O -0.169 6.169 19 H 0.073 0.927 20 H 0.080 0.920 21 H 0.080 0.920 22 H 0.142 0.858 23 H 0.145 0.855 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.367 0.633 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.431 10.812 6.832 15.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.085 4.085 3 C -0.230 4.230 4 C -0.243 4.243 5 C -0.038 4.038 6 C 0.144 3.856 7 H 0.102 0.898 8 C -0.224 4.224 9 N -0.389 5.389 10 C -0.378 4.378 11 H 0.112 0.888 12 C -0.187 4.187 13 N -0.578 5.578 14 Si 0.711 3.289 15 H -0.210 1.210 16 H -0.216 1.216 17 H -0.201 1.201 18 O -0.066 6.066 19 H 0.092 0.908 20 H 0.098 0.902 21 H 0.099 0.901 22 H 0.160 0.840 23 H 0.163 0.837 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.200 0.800 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.298 10.412 6.740 15.501 hybrid contribution -1.128 -0.217 -0.351 1.201 sum -10.426 10.194 6.389 15.920 Atomic orbital electron populations 1.20221 0.85749 1.03715 1.02940 1.22354 0.93902 0.84611 1.07664 1.21438 0.92890 0.98881 1.09756 1.21475 0.97912 0.93809 1.11118 1.23368 0.83062 0.95038 1.02370 1.18936 0.88809 0.86412 0.91428 0.89790 1.22440 1.02398 1.00608 0.96948 1.42790 1.05960 1.34476 1.55635 1.19058 0.88297 1.08874 1.21582 0.88838 1.24637 0.96736 0.98039 0.99252 1.69698 1.29375 1.23201 1.35510 0.86591 0.86045 0.77886 0.78403 1.20977 1.21553 1.20093 1.83993 1.16669 1.34830 1.71070 0.90829 0.90172 0.90133 0.84043 0.83708 0.93608 0.91259 0.93178 0.80017 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.42 36.01 0.38 -0.38 15 2 C -0.04 -0.55 7.32 -35.62 -0.26 -0.81 15 3 C -0.21 -3.15 10.81 -39.70 -0.43 -3.58 15 4 C -0.22 -3.70 10.80 -39.70 -0.43 -4.13 15 5 C 0.01 0.25 6.12 -35.63 -0.22 0.03 15 6 C 0.25 5.18 3.35 -69.08 -0.23 4.95 15 7 H 0.08 1.67 8.07 -51.93 -0.42 1.25 15 8 C -0.16 -2.99 9.47 37.16 0.35 -2.64 15 9 N -0.75 -18.50 4.92 -54.55 -0.27 -18.77 15 10 C -0.25 -7.08 10.41 -15.06 -0.16 -7.24 15 11 H 0.09 2.78 8.06 -52.48 -0.42 2.36 15 12 C 0.01 0.29 5.50 -17.43 -0.10 0.19 15 13 N -0.93 -29.31 13.97 55.49 0.78 -28.54 15 14 Si 0.88 22.71 27.74 -169.99 -4.71 18.00 15 15 H -0.28 -7.28 7.11 56.52 0.40 -6.88 15 16 H -0.29 -7.45 7.11 56.52 0.40 -7.05 15 17 H -0.27 -6.83 6.52 56.52 0.37 -6.46 15 18 O -0.17 -3.26 10.31 5.69 0.06 -3.20 15 19 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 20 H 0.08 0.69 8.14 -51.93 -0.42 0.27 15 21 H 0.08 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.14 1.69 8.06 -52.49 -0.42 1.26 15 23 H 0.15 2.06 8.06 -52.49 -0.42 1.64 15 24 H 0.04 0.70 8.14 -51.93 -0.42 0.28 15 25 H 0.07 1.32 8.14 -51.93 -0.42 0.89 15 26 H 0.05 0.93 8.14 -51.93 -0.42 0.50 15 27 H 0.37 9.23 5.37 -40.82 -0.22 9.01 15 28 H 0.26 7.81 8.31 -40.82 -0.34 7.47 15 LS Contribution 246.65 15.07 3.72 3.72 Total: -1.00 -32.03 246.65 -5.14 -37.16 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -3.61 Total: 5.25 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -1.09 Total: -13.61 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.51 Total: -47.31 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: 0.06 Total: -3.20 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.71 Total: 18.00 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.03 -5.14 -37.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037980923.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.419 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds