Wall clock time and date at job start Mon Mar 30 2020 02:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33244 * 125.52406 * 2 1 4 4 C 1.30833 * 109.82767 * 179.79622 * 3 2 1 5 5 C 1.50700 * 125.96254 * 180.23634 * 4 3 2 6 6 N 1.34425 * 108.07867 * 0.37791 * 4 3 2 7 7 C 1.46498 * 126.82395 * 179.88979 * 6 4 3 8 8 H 1.08993 * 109.47462 * 359.71657 * 7 6 4 9 9 C 1.53011 * 109.46983 * 119.71576 * 7 6 4 10 10 C 1.50696 * 109.47533 * 239.71294 * 7 6 4 11 11 H 1.08003 * 120.00166 * 356.75201 * 10 7 6 12 12 C 1.37875 * 120.00390 * 176.75079 * 10 7 6 13 13 N 1.31517 * 119.99839 * 352.55976 * 12 10 7 14 14 Si 1.86803 * 120.00459 * 172.56557 * 12 10 7 15 15 H 1.48498 * 109.47200 * 265.08156 * 14 12 10 16 16 H 1.48497 * 109.46834 * 25.08025 * 14 12 10 17 17 H 1.48498 * 109.47054 * 145.07921 * 14 12 10 18 18 N 1.30715 * 125.53120 * 180.02562 * 2 1 3 19 19 H 1.08996 * 109.47262 * 269.95521 * 1 2 3 20 20 H 1.08994 * 109.47179 * 29.96656 * 1 2 3 21 21 H 1.09001 * 109.46778 * 149.95913 * 1 2 3 22 22 H 1.08996 * 109.47534 * 270.17073 * 5 4 3 23 23 H 1.09005 * 109.46991 * 30.17116 * 5 4 3 24 24 H 1.08995 * 109.47230 * 150.16521 * 5 4 3 25 25 H 1.08995 * 109.46807 * 298.86701 * 9 7 6 26 26 H 1.09001 * 109.47098 * 58.86740 * 9 7 6 27 27 H 1.08998 * 109.46819 * 178.86878 * 9 7 6 28 28 H 0.97003 * 119.99971 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2812 1.0844 0.0000 4 6 3.5407 0.7305 0.0044 5 6 4.7227 1.6653 0.0109 6 7 3.5966 -0.6126 -0.0011 7 6 4.8048 -1.4411 -0.0013 8 1 5.6856 -0.7992 -0.0012 9 6 4.8175 -2.3246 1.2480 10 6 4.8173 -2.3110 -1.2317 11 1 3.9817 -2.2911 -1.9157 12 6 5.8954 -3.1324 -1.4844 13 7 6.9736 -3.0514 -0.7357 14 14 5.8250 -4.3604 -2.8904 15 1 5.3891 -5.6819 -2.3721 16 1 4.8584 -3.8866 -3.9133 17 1 7.1714 -4.4886 -3.5035 18 7 2.2666 -1.0638 -0.0005 19 1 -0.3633 -0.0008 1.0276 20 1 -0.3633 0.8902 -0.5133 21 1 -0.3633 -0.8896 -0.5145 22 1 5.0099 1.8951 -1.0151 23 1 4.4544 2.5866 0.5281 24 1 5.5586 1.1906 0.5246 25 1 4.8288 -1.6953 2.1378 26 1 3.9265 -2.9523 1.2581 27 1 5.7063 -2.9554 1.2377 28 1 7.7323 -3.6290 -0.9137 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041062792.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:59 Heat of formation + Delta-G solvation = 69.109000 kcal Electronic energy + Delta-G solvation = -12294.816178 eV Core-core repulsion = 10154.234709 eV Total energy + Delta-G solvation = -2140.581469 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.21697 -35.04756 -32.68750 -31.75072 -29.77643 -28.50704 -26.48463 -25.36593 -21.83053 -19.77341 -19.43619 -16.62382 -15.74520 -15.01601 -14.44983 -13.62316 -13.26908 -12.97557 -12.65254 -12.44953 -12.20867 -11.85838 -11.81290 -11.41202 -11.12610 -10.97014 -10.69565 -10.46357 -10.31937 -9.52735 -9.10392 -8.70568 -8.63292 -8.33900 -6.31058 -4.35515 2.56590 3.19915 3.26788 3.30663 3.45417 3.61894 4.26704 4.72333 5.02144 5.30788 5.48286 5.77883 5.87381 5.93791 6.08556 6.19699 6.23029 6.52003 6.63967 6.67292 7.09167 7.17416 7.35485 7.51133 7.65126 7.89535 7.99018 8.69000 9.01296 9.30286 10.76818 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.041454 B = 0.011452 C = 0.010286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.281717 B = 2444.339502 C = 2721.371034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C 0.181 3.819 3 N -0.564 5.564 4 C 0.251 3.749 5 C -0.068 4.068 6 N -0.328 5.328 7 C 0.272 3.728 8 H 0.070 0.930 9 C -0.142 4.142 10 C -0.525 4.525 11 H 0.066 0.934 12 C 0.068 3.932 13 N -0.889 5.889 14 Si 0.906 3.094 15 H -0.277 1.277 16 H -0.273 1.273 17 H -0.284 1.284 18 N -0.307 5.307 19 H 0.072 0.928 20 H 0.076 0.924 21 H 0.073 0.927 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.017 0.983 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.044 5.003 1.712 6.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.101 4.101 3 N -0.295 5.295 4 C -0.025 4.025 5 C -0.128 4.128 6 N -0.118 5.118 7 C 0.173 3.827 8 H 0.088 0.912 9 C -0.201 4.201 10 C -0.563 4.563 11 H 0.084 0.916 12 C -0.135 4.135 13 N -0.527 5.527 14 Si 0.733 3.267 15 H -0.203 1.203 16 H -0.197 1.197 17 H -0.209 1.209 18 N -0.138 5.138 19 H 0.091 0.909 20 H 0.094 0.906 21 H 0.092 0.908 22 H 0.102 0.898 23 H 0.103 0.897 24 H 0.099 0.901 25 H 0.036 0.964 26 H 0.065 0.935 27 H 0.108 0.892 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.131 4.448 1.730 6.312 hybrid contribution 0.363 -0.753 -0.727 1.108 sum -3.767 3.695 1.003 5.371 Atomic orbital electron populations 1.19875 0.85180 1.02978 1.02574 1.24048 0.97765 0.86555 1.01728 1.70139 1.00024 1.31526 1.27858 1.24075 0.94765 0.84997 0.98648 1.20234 0.91926 0.96725 1.03882 1.51057 1.06476 1.05170 1.49071 1.19425 0.77226 0.89635 0.96415 0.91226 1.22008 1.03223 1.00043 0.94818 1.21170 1.04630 1.23743 1.06784 0.91561 1.24883 0.94531 0.97071 0.97025 1.69908 1.04315 1.38751 1.39720 0.86343 0.77482 0.81262 0.81640 1.20289 1.19726 1.20933 1.77917 0.87837 1.22705 1.25306 0.90949 0.90559 0.90763 0.89753 0.89661 0.90073 0.96383 0.93520 0.89230 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.71 10.51 36.00 0.38 -0.33 15 2 C 0.18 3.82 8.14 -156.85 -1.28 2.54 15 3 N -0.56 -12.10 11.19 -8.16 -0.09 -12.19 15 4 C 0.25 5.33 7.98 -155.70 -1.24 4.09 15 5 C -0.07 -1.10 10.04 36.01 0.36 -0.73 15 6 N -0.33 -7.82 3.27 -53.00 -0.17 -8.00 15 7 C 0.27 6.77 2.95 -69.08 -0.20 6.57 15 8 H 0.07 1.73 6.74 -51.93 -0.35 1.38 15 9 C -0.14 -3.39 9.30 37.16 0.35 -3.04 15 10 C -0.52 -14.34 8.74 -34.44 -0.30 -14.65 15 11 H 0.07 1.92 7.82 -52.48 -0.41 1.51 15 12 C 0.07 1.81 5.22 -17.82 -0.09 1.72 15 13 N -0.89 -23.86 11.91 55.43 0.66 -23.20 15 14 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 15 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 16 H -0.27 -6.39 7.11 56.52 0.40 -5.98 15 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 18 N -0.31 -7.35 12.59 32.42 0.41 -6.94 15 19 H 0.07 0.97 8.14 -51.93 -0.42 0.54 15 20 H 0.08 1.03 8.14 -51.93 -0.42 0.61 15 21 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 22 H 0.08 1.26 8.14 -51.93 -0.42 0.83 15 23 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 24 H 0.08 1.24 7.14 -51.93 -0.37 0.87 15 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 15 26 H 0.05 1.13 8.14 -51.93 -0.42 0.71 15 27 H 0.09 2.23 6.61 -51.93 -0.34 1.88 15 28 H 0.27 6.81 8.31 -40.82 -0.34 6.47 15 LS Contribution 246.30 15.07 3.71 3.71 Total: -1.00 -30.25 246.30 -6.11 -36.35 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -3.57 Total: -1.85 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -2.03 Total: -3.83 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.80 Total: -50.34 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.25 -6.11 -36.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041062792.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.461 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds