Wall clock time and date at job start Mon Mar 30 2020 02:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33251 * 125.52599 * 2 1 4 4 C 1.30825 * 109.82850 * 179.97438 * 3 2 1 5 5 C 1.50694 * 125.96262 * 180.02562 * 4 3 2 6 6 N 1.34434 * 108.08133 * 359.97438 * 4 3 2 7 7 C 1.46499 * 126.82568 * 179.73483 * 6 4 3 8 8 H 1.08993 * 109.47058 * 0.02562 * 7 6 4 9 9 C 1.52992 * 109.47170 * 240.00032 * 7 6 4 10 10 C 1.50701 * 109.46829 * 120.00253 * 7 6 4 11 11 H 1.07998 * 120.00278 * 359.97438 * 10 7 6 12 12 C 1.37879 * 120.00175 * 180.02562 * 10 7 6 13 13 N 1.31519 * 119.99496 * 359.97438 * 12 10 7 14 14 Si 1.86790 * 120.00395 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.47178 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46980 * 119.99920 * 14 12 10 17 17 H 1.48504 * 109.47495 * 239.99891 * 14 12 10 18 18 N 1.30709 * 125.53091 * 179.97438 * 2 1 3 19 19 H 1.08999 * 109.47249 * 90.02573 * 1 2 3 20 20 H 1.09001 * 109.47187 * 210.02584 * 1 2 3 21 21 H 1.09007 * 109.47215 * 330.02547 * 1 2 3 22 22 H 1.09001 * 109.47107 * 269.95971 * 5 4 3 23 23 H 1.09000 * 109.47116 * 29.95156 * 5 4 3 24 24 H 1.08999 * 109.47889 * 149.95683 * 5 4 3 25 25 H 1.09006 * 109.47389 * 299.99949 * 9 7 6 26 26 H 1.09005 * 109.47329 * 60.00257 * 9 7 6 27 27 H 1.09002 * 109.47331 * 180.02562 * 9 7 6 28 28 H 0.97005 * 119.99788 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2812 1.0845 0.0000 4 6 3.5407 0.7305 0.0006 5 6 4.7227 1.6653 0.0013 6 7 3.5966 -0.6127 0.0015 7 6 4.8048 -1.4412 -0.0031 8 1 5.6856 -0.7992 -0.0070 9 6 4.8120 -2.3255 -1.2515 10 6 4.8226 -2.3101 1.2281 11 1 4.0150 -2.2508 1.9427 12 6 5.8704 -3.1802 1.4428 13 7 6.8542 -3.2521 0.5729 14 14 5.8929 -4.2567 2.9691 15 1 4.6796 -3.9882 3.7822 16 1 5.9120 -5.6859 2.5666 17 1 7.1046 -3.9523 3.7719 18 7 2.2666 -1.0637 0.0005 19 1 -0.3634 -0.0005 -1.0276 20 1 -0.3633 -0.8898 0.5142 21 1 -0.3634 0.8903 0.5135 22 1 5.0086 1.8903 -1.0262 23 1 4.4550 2.5890 0.5144 24 1 5.5593 1.1930 0.5161 25 1 3.9311 -2.9676 -1.2471 26 1 4.7991 -1.6971 -2.1421 27 1 5.7107 -2.9424 -1.2547 28 1 7.5912 -3.8644 0.7237 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041062793.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:01 Heat of formation + Delta-G solvation = 70.141828 kcal Electronic energy + Delta-G solvation = -12299.570430 eV Core-core repulsion = 10159.033747 eV Total energy + Delta-G solvation = -2140.536683 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.21380 -35.05791 -32.69897 -31.74194 -29.73461 -28.49259 -26.46226 -25.39337 -21.80271 -19.76510 -19.42832 -16.64068 -15.73030 -15.02101 -14.47649 -13.62318 -13.25030 -12.98984 -12.70856 -12.40688 -12.15679 -11.85556 -11.81023 -11.35256 -11.11960 -10.98930 -10.65805 -10.42470 -10.30861 -9.49823 -9.10593 -8.71592 -8.64636 -8.31810 -6.29195 -4.36575 2.56871 3.18120 3.26268 3.31538 3.45904 3.61945 4.26160 4.72475 5.02044 5.31595 5.48651 5.78791 5.85106 5.93751 6.08179 6.19221 6.23274 6.56936 6.67916 6.70859 7.12503 7.21919 7.35891 7.56084 7.67284 7.94321 7.99701 8.68138 9.01605 9.30271 10.76738 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.041452 B = 0.011370 C = 0.010351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.315148 B = 2461.978056 C = 2704.485380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C 0.180 3.820 3 N -0.564 5.564 4 C 0.250 3.750 5 C -0.070 4.070 6 N -0.328 5.328 7 C 0.272 3.728 8 H 0.066 0.934 9 C -0.146 4.146 10 C -0.523 4.523 11 H 0.066 0.934 12 C 0.066 3.934 13 N -0.890 5.890 14 Si 0.908 3.092 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.281 1.281 18 N -0.305 5.305 19 H 0.072 0.928 20 H 0.074 0.926 21 H 0.075 0.925 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.044 0.956 26 H 0.014 0.986 27 H 0.102 0.898 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.745 5.329 -1.313 6.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.102 4.102 3 N -0.295 5.295 4 C -0.026 4.026 5 C -0.129 4.129 6 N -0.118 5.118 7 C 0.173 3.827 8 H 0.084 0.916 9 C -0.204 4.204 10 C -0.561 4.561 11 H 0.084 0.916 12 C -0.136 4.136 13 N -0.528 5.528 14 Si 0.735 3.265 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.207 1.207 18 N -0.136 5.136 19 H 0.090 0.910 20 H 0.092 0.908 21 H 0.094 0.906 22 H 0.099 0.901 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.063 0.937 26 H 0.033 0.967 27 H 0.120 0.880 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.846 4.755 -1.343 6.262 hybrid contribution 0.388 -0.659 0.750 1.071 sum -3.458 4.097 -0.593 5.394 Atomic orbital electron populations 1.19876 0.85179 1.02973 1.02574 1.24052 0.97771 0.86556 1.01776 1.70137 1.00033 1.31540 1.27832 1.24072 0.94768 0.85014 0.98753 1.20248 0.92222 0.96963 1.03477 1.51082 1.06507 1.05142 1.49040 1.19434 0.77064 0.89482 0.96695 0.91636 1.22063 1.04091 1.00008 0.94264 1.21229 1.07493 1.22075 1.05353 0.91571 1.24884 0.94889 0.96590 0.97283 1.69856 1.10134 1.37652 1.35204 0.86268 0.78143 0.79968 0.82137 1.19629 1.20605 1.20678 1.77925 0.87821 1.22684 1.25196 0.90957 0.90755 0.90564 0.90112 0.89561 0.89700 0.93713 0.96740 0.87977 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.71 10.51 36.00 0.38 -0.34 15 2 C 0.18 3.82 8.14 -156.85 -1.28 2.54 15 3 N -0.56 -12.12 11.19 -8.16 -0.09 -12.21 15 4 C 0.25 5.31 7.98 -155.70 -1.24 4.06 15 5 C -0.07 -1.11 10.04 36.00 0.36 -0.75 15 6 N -0.33 -7.84 3.27 -53.01 -0.17 -8.01 15 7 C 0.27 6.79 3.06 -69.09 -0.21 6.58 15 8 H 0.07 1.62 6.74 -51.93 -0.35 1.27 15 9 C -0.15 -3.53 9.25 37.15 0.34 -3.18 15 10 C -0.52 -14.29 8.79 -34.44 -0.30 -14.59 15 11 H 0.07 1.91 7.81 -52.49 -0.41 1.50 15 12 C 0.07 1.76 5.30 -17.82 -0.09 1.67 15 13 N -0.89 -23.82 11.32 55.43 0.63 -23.19 15 14 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 15 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 18 N -0.31 -7.36 12.58 32.42 0.41 -6.95 15 19 H 0.07 0.97 8.14 -51.93 -0.42 0.55 15 20 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 21 H 0.08 1.03 8.14 -51.92 -0.42 0.61 15 22 H 0.08 1.12 8.14 -51.93 -0.42 0.69 15 23 H 0.09 1.19 8.14 -51.93 -0.42 0.76 15 24 H 0.08 1.35 7.14 -51.93 -0.37 0.97 15 25 H 0.04 1.11 8.14 -51.93 -0.42 0.69 15 26 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 15 27 H 0.10 2.59 6.07 -51.93 -0.32 2.27 15 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 15 LS Contribution 245.36 15.07 3.70 3.70 Total: -1.00 -30.25 245.36 -6.14 -36.39 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -3.54 Total: -1.64 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.04 Total: -4.00 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.77 Total: -50.37 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.25 -6.14 -36.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041062793.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.534 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds