Wall clock time and date at job start Mon Mar 30 2020 02:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00044 * 2 1 4 4 H 1.48500 * 109.47009 * 270.00064 * 3 2 1 5 5 H 1.48504 * 109.47036 * 29.99930 * 3 2 1 6 6 H 1.48494 * 109.47284 * 149.99834 * 3 2 1 7 7 C 1.37872 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99902 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00214 * 180.02562 * 7 2 1 10 10 N 1.46897 * 109.47365 * 180.02562 * 9 7 2 11 11 C 1.46901 * 111.00178 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47161 * 180.02562 * 11 10 9 13 13 N 1.46501 * 109.47323 * 180.02562 * 12 11 10 14 14 C 1.36890 * 126.39537 * 270.03108 * 13 12 11 15 15 C 1.34669 * 106.81617 * 179.97438 * 14 13 12 16 16 N 1.34134 * 108.02026 * 0.02562 * 15 14 13 17 17 C 1.30493 * 109.25480 * 0.02562 * 16 15 14 18 18 H 0.97002 * 119.99633 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47416 * 60.00222 * 9 7 2 20 20 H 1.09003 * 109.47382 * 300.00038 * 9 7 2 21 21 H 1.00898 * 111.00447 * 303.95551 * 10 9 7 22 22 H 1.09006 * 109.47062 * 60.00088 * 11 10 9 23 23 H 1.09002 * 109.47316 * 300.00378 * 11 10 9 24 24 H 1.09002 * 109.47343 * 60.00518 * 12 11 10 25 25 H 1.08998 * 109.47519 * 299.99896 * 12 11 10 26 26 H 1.07996 * 126.59258 * 359.97438 * 14 13 12 27 27 H 1.08002 * 125.99042 * 180.26007 * 15 14 13 28 28 H 1.08006 * 125.64594 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0012 -2.5790 0.0010 11 6 5.4697 -2.6182 0.0009 12 6 5.9410 -4.0738 0.0002 13 7 7.4055 -4.1129 0.0007 14 6 8.2179 -4.1333 -1.1008 15 6 9.4861 -4.1672 -0.6491 16 7 9.4490 -4.1681 0.6918 17 6 8.2061 -4.1366 1.0880 18 1 -0.4850 0.8401 -0.0004 19 1 3.8746 -0.6801 0.8911 20 1 3.8753 -0.6804 -0.8888 21 1 3.6254 -3.0955 0.7820 22 1 5.8466 -2.1143 0.8910 23 1 5.8466 -2.1141 -0.8890 24 1 5.5641 -4.5773 -0.8901 25 1 5.5641 -4.5782 0.8899 26 1 7.9024 -4.1240 -2.1337 27 1 10.3769 -4.1862 -1.2593 28 1 7.8729 -4.1290 2.1153 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042224897.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:14 Heat of formation + Delta-G solvation = 40.144189 kcal Electronic energy + Delta-G solvation = -11552.827630 eV Core-core repulsion = 9410.990152 eV Total energy + Delta-G solvation = -2141.837478 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.90763 -37.75751 -35.30133 -34.14360 -30.81027 -30.20974 -27.79003 -24.03393 -23.07422 -22.22960 -21.71267 -19.02325 -18.26662 -17.07376 -16.32597 -16.11357 -15.45445 -15.18619 -14.75939 -14.58992 -14.34128 -14.08443 -13.93325 -13.15417 -12.66337 -12.53924 -12.28660 -11.89589 -11.55670 -10.95800 -10.83896 -10.57031 -9.43571 -9.29861 -8.33129 -6.38175 1.16004 1.34017 1.34676 1.45074 1.86931 2.23711 2.30985 3.01117 3.46812 3.76052 3.89346 3.98688 4.12761 4.36254 4.48938 4.63659 4.74097 4.81328 4.84480 5.00875 5.38884 5.47131 5.82311 5.85755 6.28310 6.44686 6.57563 6.71781 7.14653 7.27047 8.83234 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.074177 B = 0.006312 C = 0.006066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.385272 B = 4434.874020 C = 4614.561916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.010 3.990 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.253 1.253 7 C -0.530 4.530 8 H 0.043 0.957 9 C 0.175 3.825 10 N -0.682 5.682 11 C 0.049 3.951 12 C 0.117 3.883 13 N -0.455 5.455 14 C -0.054 4.054 15 C -0.057 4.057 16 N -0.537 5.537 17 C 0.172 3.828 18 H 0.268 0.732 19 H -0.011 1.011 20 H 0.023 0.977 21 H 0.344 0.656 22 H 0.028 0.972 23 H 0.064 0.936 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.196 0.804 27 H 0.184 0.816 28 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.793 -6.479 -0.209 16.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.188 4.188 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.176 1.176 7 C -0.568 4.568 8 H 0.061 0.939 9 C 0.046 3.954 10 N -0.314 5.314 11 C -0.081 4.081 12 C -0.006 4.006 13 N -0.138 5.138 14 C -0.188 4.188 15 C -0.204 4.204 16 N -0.256 5.256 17 C -0.110 4.110 18 H 0.077 0.923 19 H 0.006 0.994 20 H 0.041 0.959 21 H 0.162 0.838 22 H 0.046 0.954 23 H 0.083 0.917 24 H 0.128 0.872 25 H 0.132 0.868 26 H 0.213 0.787 27 H 0.201 0.799 28 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 15.120 -6.457 -0.383 16.446 hybrid contribution -0.688 1.117 0.314 1.349 sum 14.432 -5.340 -0.069 15.389 Atomic orbital electron populations 1.70043 1.08113 1.28287 1.52071 1.25847 0.95613 1.03215 0.94152 0.85693 0.79241 0.78631 0.79208 1.19142 1.20629 1.17638 1.21316 0.91213 0.93623 1.50654 0.93897 1.19745 0.93842 0.86881 0.94884 1.60266 1.05775 1.15106 1.50210 1.22206 0.88920 0.96288 1.00729 1.21838 0.75002 0.96908 1.06820 1.45692 1.07972 1.53086 1.07018 1.23228 0.91065 1.10488 0.94001 1.22688 0.97610 1.08984 0.91085 1.70255 1.20714 1.21314 1.13298 1.25515 0.85376 1.05146 0.94976 0.92274 0.99373 0.95884 0.83755 0.95384 0.91712 0.87218 0.86836 0.78698 0.79936 0.75776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.89 13.96 21.45 0.30 -57.59 15 2 C 0.01 0.55 5.47 84.65 0.46 1.02 15 3 Si 0.95 43.09 27.47 68.60 1.88 44.98 15 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 6 H -0.25 -10.73 6.54 99.48 0.65 -10.08 15 7 C -0.53 -29.65 9.87 25.60 0.25 -29.39 15 8 H 0.04 2.64 8.06 -2.91 -0.02 2.62 15 9 C 0.18 7.94 4.51 85.56 0.39 8.33 15 10 N -0.68 -24.62 6.49 -517.94 -3.36 -27.98 15 11 C 0.05 1.35 6.01 86.30 0.52 1.87 15 12 C 0.12 2.36 6.41 86.38 0.55 2.91 15 13 N -0.46 -9.96 2.75 -529.07 -1.46 -11.41 15 14 C -0.05 -1.16 11.58 83.08 0.96 -0.20 15 15 C -0.06 -1.35 11.87 83.52 0.99 -0.36 15 16 N -0.54 -14.83 11.25 -200.31 -2.25 -17.09 15 17 C 0.17 3.99 12.56 180.27 2.26 6.25 15 18 H 0.27 15.30 8.31 -92.71 -0.77 14.53 15 19 H -0.01 -0.51 7.20 -2.39 -0.02 -0.53 15 20 H 0.02 1.05 7.57 -2.39 -0.02 1.04 15 21 H 0.34 11.68 8.72 -89.70 -0.78 10.90 15 22 H 0.03 0.79 8.14 -2.38 -0.02 0.77 15 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 15 24 H 0.11 2.10 8.14 -2.39 -0.02 2.08 15 25 H 0.11 1.86 8.14 -2.39 -0.02 1.84 15 26 H 0.20 3.07 8.06 -2.91 -0.02 3.05 15 27 H 0.18 3.41 8.06 -2.91 -0.02 3.39 15 28 H 0.23 3.71 8.06 -2.91 -0.02 3.68 15 Total: -1.00 -68.06 247.55 1.81 -66.25 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.30 Total: 12.41 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 6.39 Total: -9.57 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -6.77 Total: -114.07 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.88 Total: 44.98 kcal Total: -68.06 1.81 -66.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042224897.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.397 kcal (2) G-P(sol) polarization free energy of solvation -68.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds