Wall clock time and date at job start Mon Mar 30 2020 01:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86798 * 119.99669 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00120 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99679 * 3 2 1 7 7 C 1.40045 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00438 * 0.02562 * 7 2 1 10 10 O 1.21683 * 119.99846 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00143 * 179.97438 * 9 7 2 12 12 C 1.47789 * 126.65746 * 0.02793 * 11 9 7 13 13 C 1.56043 * 105.24553 * 180.86771 * 12 11 9 14 14 H 1.09002 * 116.44321 * 159.13285 * 13 12 11 15 15 C 1.56084 * 103.94984 * 288.52360 * 13 12 11 16 16 C 1.56213 * 103.30223 * 67.66112 * 15 13 12 17 17 C 1.49137 * 126.66050 * 179.70699 * 11 9 7 18 18 H 1.08999 * 115.70396 * 19.26034 * 17 11 9 19 19 C 1.57144 * 99.45084 * 32.81979 * 13 12 11 20 20 H 0.96996 * 120.00331 * 0.02562 * 1 2 3 21 21 H 1.08996 * 110.28372 * 299.80851 * 12 11 9 22 22 H 1.08995 * 110.28897 * 61.92610 * 12 11 9 23 23 H 1.09000 * 110.49711 * 185.93184 * 15 13 12 24 24 H 1.08999 * 110.49182 * 308.61050 * 15 13 12 25 25 H 1.08997 * 110.16530 * 241.93130 * 16 15 13 26 26 H 1.09006 * 110.56801 * 119.64771 * 16 15 13 27 27 H 1.08997 * 112.19324 * 65.23584 * 19 13 12 28 28 H 1.08994 * 112.20046 * 192.13952 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 1.2757 2.7464 -0.0006 5 1 3.0944 1.6965 1.2124 6 1 3.0944 1.6963 -1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 3.4169 -3.8190 0.0011 13 6 3.6500 -5.3618 -0.0220 14 1 4.6250 -5.7002 -0.3727 15 6 3.2272 -5.8276 1.4065 16 6 1.6847 -5.5813 1.4230 17 6 1.3582 -5.0170 0.0067 18 1 0.3182 -5.0846 -0.3125 19 6 2.4023 -5.7985 -0.8716 20 1 -0.4850 0.8400 -0.0004 21 1 3.8515 -3.3578 -0.8857 22 1 3.8477 -3.3852 0.9034 23 1 3.4473 -6.8863 1.5434 24 1 3.7304 -5.2306 2.1671 25 1 1.4289 -4.8520 2.1915 26 1 1.1496 -6.5156 1.5931 27 1 2.4483 -5.4229 -1.8938 28 1 2.2410 -6.8761 -0.8425 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042326142.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:15 Heat of formation + Delta-G solvation = -50.837793 kcal Electronic energy + Delta-G solvation = -12550.455893 eV Core-core repulsion = 10372.380389 eV Total energy + Delta-G solvation = -2178.075504 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.17012 -38.25425 -34.68803 -33.13432 -30.41277 -29.28623 -28.07039 -25.07327 -22.42889 -20.86561 -19.99450 -18.64243 -17.71880 -16.52724 -16.39951 -15.94351 -15.15806 -14.67218 -13.99053 -13.75360 -13.42236 -13.02438 -12.77170 -12.55912 -12.33766 -12.28573 -12.07273 -11.97049 -11.88072 -11.67371 -11.23525 -10.95405 -9.87286 -9.01055 -8.32205 -6.88582 1.35873 1.40236 1.52147 2.21048 2.42184 2.81478 3.50615 3.56005 3.74973 3.84576 4.26557 4.29614 4.50424 4.55227 4.79360 4.84512 4.91692 5.03074 5.06141 5.11705 5.23200 5.27465 5.33164 5.45618 5.63816 6.00333 6.42968 6.82846 7.51389 8.43897 8.64537 Molecular weight = 195.10amu Principal moments of inertia in cm(-1) A = 0.059219 B = 0.011059 C = 0.010122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.705287 B = 2531.243019 C = 2765.609590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.026 3.974 3 Si 1.000 3.000 4 H -0.271 1.271 5 H -0.254 1.254 6 H -0.253 1.253 7 C -0.568 4.568 8 H 0.083 0.917 9 C 0.551 3.449 10 O -0.638 6.638 11 N -0.655 5.655 12 C 0.114 3.886 13 C -0.094 4.094 14 H 0.148 0.852 15 C -0.106 4.106 16 C -0.131 4.131 17 C 0.102 3.898 18 H 0.073 0.927 19 C -0.120 4.120 20 H 0.275 0.725 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.099 0.901 24 H 0.062 0.938 25 H 0.027 0.973 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.353 -9.232 0.533 13.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.188 4.188 3 Si 0.819 3.181 4 H -0.196 1.196 5 H -0.178 1.178 6 H -0.177 1.177 7 C -0.605 4.605 8 H 0.101 0.899 9 C 0.358 3.642 10 O -0.526 6.526 11 N -0.392 5.392 12 C -0.009 4.009 13 C -0.112 4.112 14 H 0.165 0.835 15 C -0.144 4.144 16 C -0.170 4.170 17 C -0.001 4.001 18 H 0.091 0.909 19 C -0.158 4.158 20 H 0.085 0.915 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.117 0.883 24 H 0.081 0.919 25 H 0.046 0.954 26 H 0.106 0.894 27 H 0.080 0.920 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.487 -9.054 0.545 13.125 hybrid contribution -0.353 1.063 0.065 1.122 sum 9.134 -7.991 0.610 12.151 Atomic orbital electron populations 1.70195 1.09617 1.29062 1.36492 1.27054 0.95580 1.05070 0.91136 0.85048 0.78232 0.74495 0.80366 1.19575 1.17766 1.17682 1.21370 0.94437 0.89941 1.54729 0.89900 1.18398 0.86317 0.83471 0.76017 1.90530 1.16228 1.87464 1.58346 1.49229 1.07049 1.04578 1.78368 1.22346 0.81176 0.97527 0.99844 1.24012 0.99475 0.91890 0.95868 0.83480 1.22881 0.93139 1.02357 0.95988 1.23181 0.98351 0.99990 0.95458 1.23551 0.97110 0.82813 0.96660 0.90895 1.23832 0.94100 1.00529 0.97360 0.91504 0.93383 0.93329 0.88271 0.91932 0.95376 0.89438 0.91975 0.87233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.57 11.83 21.83 0.26 -52.31 15 2 C 0.03 1.53 5.50 85.30 0.47 2.00 15 3 Si 1.00 42.39 29.56 68.60 2.03 44.42 15 4 H -0.27 -10.98 7.11 99.48 0.71 -10.28 15 5 H -0.25 -10.09 7.11 99.48 0.71 -9.39 15 6 H -0.25 -10.04 7.11 99.48 0.71 -9.33 15 7 C -0.57 -34.12 9.10 24.83 0.23 -33.89 15 8 H 0.08 4.52 7.22 -2.91 -0.02 4.50 15 9 C 0.55 34.45 7.82 86.36 0.68 35.13 15 10 O -0.64 -45.68 15.34 -4.29 -0.07 -45.75 15 11 N -0.65 -32.10 2.93 -773.76 -2.27 -34.36 15 12 C 0.11 4.28 5.45 87.19 0.48 4.76 15 13 C -0.09 -2.41 5.28 -7.21 -0.04 -2.44 15 14 H 0.15 2.58 8.14 -2.39 -0.02 2.56 15 15 C -0.11 -2.64 6.36 32.78 0.21 -2.43 15 16 C -0.13 -4.34 6.40 32.72 0.21 -4.13 15 17 C 0.10 4.11 5.09 46.98 0.24 4.35 15 18 H 0.07 3.30 8.04 -2.39 -0.02 3.28 15 19 C -0.12 -3.42 6.65 33.54 0.22 -3.20 15 20 H 0.28 15.83 8.29 -92.71 -0.77 15.06 15 21 H 0.05 1.80 8.14 -2.39 -0.02 1.78 15 22 H 0.05 1.84 7.82 -2.39 -0.02 1.82 15 23 H 0.10 1.75 8.14 -2.39 -0.02 1.73 15 24 H 0.06 1.60 7.86 -2.39 -0.02 1.59 15 25 H 0.03 1.11 8.14 -2.39 -0.02 1.09 15 26 H 0.09 2.37 8.14 -2.38 -0.02 2.35 15 27 H 0.06 1.89 8.14 -2.39 -0.02 1.87 15 28 H 0.11 2.33 8.14 -2.39 -0.02 2.31 15 Total: -1.00 -80.71 234.85 3.78 -76.93 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.14 Total: 10.94 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 2.69 Total: 0.14 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -2.01 Total: -86.68 kcal Atomic # 8 Polarization: -45.68 SS G_CDS: -0.07 Total: -45.75 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -80.71 3.78 -76.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042326142.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.093 kcal (2) G-P(sol) polarization free energy of solvation -80.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds