Wall clock time and date at job start Mon Mar 30 2020 02:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99507 * 2 1 4 4 H 1.48507 * 109.47021 * 269.99658 * 3 2 1 5 5 H 1.48493 * 109.47462 * 29.99867 * 3 2 1 6 6 H 1.48501 * 109.47005 * 150.00234 * 3 2 1 7 7 C 1.37877 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99880 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99647 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47008 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00245 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47243 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.47035 * 179.97438 * 12 11 10 14 14 C 1.34944 * 126.03372 * 125.00124 * 13 12 11 15 15 C 1.35317 * 107.74658 * 179.97438 * 14 13 12 16 16 C 1.39871 * 107.91935 * 0.02562 * 15 14 13 17 17 N 1.30845 * 108.20108 * 359.74200 * 16 15 14 18 18 H 0.96997 * 120.00483 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.47659 * 60.00244 * 9 7 2 20 20 H 1.09000 * 109.47620 * 300.00117 * 9 7 2 21 21 H 1.00904 * 110.99709 * 56.04868 * 10 9 7 22 22 H 1.09004 * 109.47041 * 60.00071 * 11 10 9 23 23 H 1.09004 * 109.47535 * 300.00110 * 11 10 9 24 24 H 1.09004 * 109.46930 * 60.00143 * 12 11 10 25 25 H 1.09000 * 109.47312 * 300.00087 * 12 11 10 26 26 H 1.08001 * 126.12891 * 0.02562 * 14 13 12 27 27 H 1.08002 * 126.04160 * 179.97438 * 15 14 13 28 28 H 1.07995 * 125.90070 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4404 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5056 -4.9069 -0.0011 12 6 2.5306 -6.0429 -0.0018 13 7 1.8323 -7.3308 -0.0018 14 6 2.0037 -8.3268 -0.8959 15 6 1.1777 -9.3405 -0.5477 16 6 0.4770 -8.9503 0.5982 17 7 0.8724 -7.7478 0.9294 18 1 -0.4851 0.8400 0.0004 19 1 0.6242 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8896 21 1 2.8407 -3.5485 0.7809 22 1 0.8810 -4.9812 -0.8914 23 1 0.8804 -4.9818 0.8886 24 1 3.1556 -5.9689 0.8883 25 1 3.1555 -5.9680 -0.8917 26 1 2.6798 -8.3171 -1.7381 27 1 1.0767 -10.2838 -1.0639 28 1 -0.2600 -9.5411 1.1217 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042540988.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:20 Heat of formation + Delta-G solvation = 50.914474 kcal Electronic energy + Delta-G solvation = -11478.996586 eV Core-core repulsion = 9337.626143 eV Total energy + Delta-G solvation = -2141.370443 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.97993 -37.64091 -35.10733 -33.68800 -31.08449 -29.92561 -27.51733 -24.32734 -23.29517 -21.90730 -21.45201 -18.62759 -18.07924 -16.91865 -16.52234 -16.23708 -15.35019 -14.92967 -14.74120 -14.27516 -14.02806 -13.73357 -13.51717 -13.00581 -12.70422 -12.53056 -12.39065 -12.05389 -11.53390 -11.37065 -10.69686 -10.39133 -9.48965 -9.31757 -8.25781 -6.38344 1.03564 1.41214 1.43505 1.54670 1.62305 2.00391 2.38607 3.07843 3.36723 3.85776 3.91322 4.10080 4.20361 4.32607 4.59234 4.75446 4.87518 4.93345 5.01935 5.16325 5.19113 5.55453 5.79353 5.93358 6.17758 6.28023 6.60149 6.81717 6.82855 7.33022 8.86303 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.105170 B = 0.005654 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 266.172215 B = 4951.403092 C = 5093.085956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.002 4.002 3 Si 0.979 3.021 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.537 4.537 8 H 0.072 0.928 9 C 0.208 3.792 10 N -0.678 5.678 11 C 0.058 3.942 12 C 0.146 3.854 13 N -0.382 5.382 14 C 0.053 3.947 15 C -0.285 4.285 16 C 0.033 3.967 17 N -0.350 5.350 18 H 0.266 0.734 19 H -0.001 1.001 20 H -0.042 1.042 21 H 0.341 0.659 22 H 0.053 0.947 23 H 0.012 0.988 24 H 0.090 0.910 25 H 0.130 0.870 26 H 0.208 0.792 27 H 0.174 0.826 28 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.562 -15.573 -1.666 16.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.803 3.197 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.575 4.575 8 H 0.090 0.910 9 C 0.080 3.920 10 N -0.309 5.309 11 C -0.073 4.073 12 C 0.025 3.975 13 N -0.164 5.164 14 C -0.093 4.093 15 C -0.315 4.315 16 C -0.153 4.153 17 N -0.173 5.173 18 H 0.075 0.925 19 H 0.017 0.983 20 H -0.024 1.024 21 H 0.158 0.842 22 H 0.072 0.928 23 H 0.031 0.969 24 H 0.108 0.892 25 H 0.148 0.852 26 H 0.225 0.775 27 H 0.191 0.809 28 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.447 -14.355 -1.524 15.429 hybrid contribution -0.489 0.236 0.413 0.682 sum 4.957 -14.119 -1.111 15.005 Atomic orbital electron populations 1.70108 1.08035 1.28177 1.51334 1.26045 0.95811 1.03731 0.94408 0.85242 0.78487 0.77461 0.78550 1.19681 1.20846 1.18379 1.21535 0.94064 0.91007 1.50906 0.91030 1.19218 0.90645 0.88949 0.93182 1.60506 1.20357 1.00697 1.49336 1.21982 0.95942 0.89777 0.99566 1.21651 0.92850 0.77238 1.05792 1.48864 1.32072 1.14226 1.21276 1.23313 1.01402 0.88299 0.96239 1.21897 1.04268 1.03191 1.02105 1.24462 1.00372 0.92906 0.97518 1.77351 1.08127 1.16023 1.15756 0.92541 0.98282 1.02411 0.84157 0.92815 0.96923 0.89194 0.85203 0.77490 0.80900 0.77892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.49 13.29 21.45 0.28 -57.20 15 2 C 0.00 -0.10 5.46 84.65 0.46 0.36 15 3 Si 0.98 44.17 29.54 68.60 2.03 46.20 15 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 15 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 15 7 C -0.54 -30.73 9.32 25.60 0.24 -30.49 15 8 H 0.07 3.89 7.81 -2.91 -0.02 3.87 15 9 C 0.21 11.43 5.44 85.56 0.47 11.89 15 10 N -0.68 -28.97 6.49 -517.93 -3.36 -32.33 15 11 C 0.06 2.16 5.87 86.30 0.51 2.66 15 12 C 0.15 3.98 6.77 86.38 0.58 4.56 15 13 N -0.38 -10.71 3.68 -348.04 -1.28 -11.99 15 14 C 0.05 1.13 11.45 83.54 0.96 2.09 15 15 C -0.29 -5.83 10.80 21.99 0.24 -5.60 15 16 C 0.03 0.80 12.03 85.24 1.03 1.83 15 17 N -0.35 -11.20 12.42 -57.02 -0.71 -11.91 15 18 H 0.27 15.26 8.31 -92.71 -0.77 14.49 15 19 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 15 20 H -0.04 -2.51 8.14 -2.39 -0.02 -2.53 15 21 H 0.34 13.42 8.72 -89.69 -0.78 12.64 15 22 H 0.05 2.13 8.14 -2.38 -0.02 2.11 15 23 H 0.01 0.52 8.14 -2.39 -0.02 0.50 15 24 H 0.09 2.29 8.14 -2.38 -0.02 2.27 15 25 H 0.13 2.83 8.07 -2.39 -0.02 2.81 15 26 H 0.21 2.65 8.06 -2.91 -0.02 2.62 15 27 H 0.17 2.39 8.06 -2.91 -0.02 2.37 15 28 H 0.20 3.57 8.06 -2.91 -0.02 3.54 15 Total: -1.00 -70.40 251.67 1.80 -68.61 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.36 Total: 11.33 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 4.48 Total: -12.69 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -5.06 Total: -113.44 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -70.40 1.80 -68.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042540988.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.521 kcal (2) G-P(sol) polarization free energy of solvation -70.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds