Wall clock time and date at job start Mon Mar 30 2020 02:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30835 * 125.83808 * 2 1 4 4 N 1.40071 * 108.38794 * 180.12408 * 3 2 1 5 5 C 1.46491 * 126.04208 * 179.81777 * 4 3 2 6 6 C 1.50702 * 109.46957 * 269.68900 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48496 * 109.47341 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46983 * 120.00379 * 10 8 6 13 13 H 1.48503 * 109.47491 * 240.00192 * 10 8 6 14 14 C 1.35248 * 107.91060 * 359.55650 * 4 3 2 15 15 N 1.39210 * 126.21700 * 180.24564 * 14 4 3 16 16 C 1.36169 * 107.56271 * 0.25862 * 14 4 3 17 17 C 1.50700 * 126.09522 * 180.02562 * 16 14 4 18 18 H 1.09003 * 109.47250 * 270.37345 * 1 2 3 19 19 H 1.09001 * 109.46738 * 30.36658 * 1 2 3 20 20 H 1.08997 * 109.47314 * 150.36781 * 1 2 3 21 21 H 1.09004 * 109.47166 * 149.69165 * 5 4 3 22 22 H 1.08994 * 109.47507 * 29.68872 * 5 4 3 23 23 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 24 24 H 0.97002 * 119.99771 * 0.02562 * 15 14 4 25 25 H 0.96999 * 119.99795 * 180.02562 * 15 14 4 26 26 H 1.09009 * 109.46555 * 90.00587 * 17 16 14 27 27 H 1.09000 * 109.47357 * 210.00129 * 17 16 14 28 28 H 1.08999 * 109.47382 * 330.00715 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2731 1.0606 0.0000 4 7 3.6094 0.6406 -0.0029 5 6 4.7868 1.5121 -0.0076 6 6 5.1913 1.8023 -1.4300 7 1 4.6274 1.3800 -2.2487 8 6 6.2776 2.6119 -1.6864 9 7 6.9640 3.1263 -0.6896 10 14 6.7742 2.9777 -3.4496 11 1 5.8468 2.2842 -4.3792 12 1 6.7103 4.4421 -3.6882 13 1 8.1602 2.4982 -3.6832 14 6 3.6203 -0.7118 0.0053 15 7 4.7500 -1.5252 0.0105 16 6 2.3254 -1.1331 0.0073 17 6 1.8579 -2.5658 0.0164 18 1 -0.3634 0.0067 1.0277 19 1 -0.3633 0.8867 -0.5195 20 1 -0.3634 -0.8932 -0.5081 21 1 5.6081 1.0161 0.5097 22 1 4.5492 2.4467 0.5003 23 1 7.7285 3.6956 -0.8700 24 1 5.6344 -1.1269 0.0087 25 1 4.6527 -2.4903 0.0160 26 1 1.7446 -2.9044 1.0463 27 1 0.8995 -2.6385 -0.4975 28 1 2.5916 -3.1906 -0.4928 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045628358.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:24 Heat of formation + Delta-G solvation = 58.227078 kcal Electronic energy + Delta-G solvation = -12116.703993 eV Core-core repulsion = 9975.650648 eV Total energy + Delta-G solvation = -2141.053345 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.32521 -34.29157 -33.67951 -32.29394 -29.64108 -28.96306 -26.17840 -24.97820 -22.29590 -19.38214 -19.02835 -16.70010 -16.03460 -15.63492 -14.63634 -14.40762 -13.91093 -12.80271 -12.66504 -12.45598 -12.32884 -11.88217 -11.83108 -11.57005 -11.26492 -10.95051 -10.80769 -10.25505 -10.11613 -9.66759 -9.49344 -8.64273 -7.65409 -6.82508 -6.24841 -4.32111 3.08381 3.20006 3.28216 3.34454 3.54999 3.61044 4.29568 4.56523 5.08474 5.43588 5.71277 5.75102 6.01640 6.08052 6.19009 6.29162 6.42337 6.49089 6.71999 6.97405 7.13600 7.43937 7.67378 7.74135 7.92359 8.15646 8.40083 8.76849 8.95060 9.34743 10.82410 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.047827 B = 0.009838 C = 0.009299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.301627 B = 2845.377189 C = 3010.320614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.072 3.928 3 N -0.306 5.306 4 N -0.360 5.360 5 C 0.262 3.738 6 C -0.534 4.534 7 H 0.064 0.936 8 C 0.064 3.936 9 N -0.893 5.893 10 Si 0.906 3.094 11 H -0.272 1.272 12 H -0.280 1.280 13 H -0.281 1.281 14 C 0.368 3.632 15 N -0.857 5.857 16 C -0.343 4.343 17 C -0.047 4.047 18 H 0.066 0.934 19 H 0.064 0.936 20 H 0.067 0.933 21 H 0.043 0.957 22 H 0.052 0.948 23 H 0.267 0.733 24 H 0.403 0.597 25 H 0.404 0.596 26 H 0.042 0.958 27 H 0.052 0.948 28 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.918 -9.073 1.295 10.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.094 4.094 3 N -0.130 5.130 4 N -0.146 5.146 5 C 0.144 3.856 6 C -0.573 4.573 7 H 0.082 0.918 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.733 3.267 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.207 1.207 14 C 0.138 3.862 15 N -0.407 5.407 16 C -0.359 4.359 17 C -0.105 4.105 18 H 0.084 0.916 19 H 0.083 0.917 20 H 0.086 0.914 21 H 0.061 0.939 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.232 0.768 25 H 0.234 0.766 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.665 -7.493 1.340 9.489 hybrid contribution 0.914 -0.722 -0.947 1.502 sum -4.751 -8.215 0.393 9.498 Atomic orbital electron populations 1.20007 0.88167 1.02169 1.01798 1.21676 0.95922 0.90613 1.01165 1.77285 0.86323 1.21792 1.27571 1.49014 1.06161 1.02471 1.56973 1.19494 0.78045 0.89547 0.98563 1.21419 1.13161 1.31113 0.91611 0.91797 1.24949 0.95801 0.95048 0.98113 1.69937 1.19372 1.32747 1.31029 0.86304 0.78264 0.78314 0.83807 1.19620 1.20618 1.20730 1.17698 0.88367 0.83646 0.96513 1.41457 1.05079 1.07183 1.86989 1.18869 0.89890 0.95970 1.31215 1.19714 0.99708 0.91470 0.99645 0.91563 0.91658 0.91407 0.93910 0.93034 0.92367 0.76790 0.76615 0.93942 0.92942 0.93852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.26 36.01 0.37 -0.57 15 2 C 0.07 1.47 7.21 -82.44 -0.59 0.88 15 3 N -0.31 -7.40 12.56 33.65 0.42 -6.98 15 4 N -0.36 -8.80 3.60 -61.64 -0.22 -9.02 15 5 C 0.26 6.90 6.00 -5.20 -0.03 6.87 15 6 C -0.53 -15.05 9.39 -34.44 -0.32 -15.37 15 7 H 0.06 1.88 7.81 -52.49 -0.41 1.47 15 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 9 N -0.89 -25.41 13.29 55.43 0.74 -24.67 15 10 Si 0.91 21.40 29.54 -169.99 -5.02 16.38 15 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 14 C 0.37 7.74 7.94 -153.41 -1.22 6.53 15 15 N -0.86 -14.54 9.10 31.10 0.28 -14.26 15 16 C -0.34 -6.63 6.13 -104.79 -0.64 -7.27 15 17 C -0.05 -0.69 9.99 36.01 0.36 -0.33 15 18 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 19 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 20 H 0.07 0.86 7.25 -51.93 -0.38 0.48 15 21 H 0.04 1.11 7.50 -51.93 -0.39 0.72 15 22 H 0.05 1.46 8.14 -51.93 -0.42 1.04 15 23 H 0.27 7.13 8.31 -40.82 -0.34 6.79 15 24 H 0.40 6.92 8.09 -40.82 -0.33 6.59 15 25 H 0.40 5.39 8.19 -40.82 -0.33 5.06 15 26 H 0.04 0.56 8.14 -51.92 -0.42 0.14 15 27 H 0.05 0.68 7.25 -51.93 -0.38 0.31 15 28 H 0.04 0.57 7.60 -51.93 -0.39 0.17 15 LS Contribution 246.35 15.07 3.71 3.71 Total: -1.00 -31.27 246.35 -5.70 -36.97 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -3.44 Total: 5.47 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -2.18 Total: -7.60 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 1.22 Total: -54.93 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.27 -5.70 -36.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045628358.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.196 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds