Wall clock time and date at job start Mon Mar 30 2020 02:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47509 * 2 1 4 4 C 1.35245 * 126.07079 * 84.99372 * 3 2 1 5 5 C 1.40430 * 107.86374 * 180.02562 * 4 3 2 6 6 N 1.39984 * 125.97295 * 179.97438 * 5 4 3 7 7 N 1.31216 * 108.04831 * 0.02562 * 5 4 3 8 8 N 1.34960 * 126.06761 * 265.00351 * 3 2 1 9 9 C 1.46500 * 125.97389 * 0.25752 * 8 3 2 10 10 C 1.50702 * 109.47024 * 269.71879 * 9 8 3 11 11 H 1.08005 * 120.00347 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00110 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99972 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99889 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47177 * 89.99760 * 14 12 10 16 16 H 1.48497 * 109.46981 * 209.99971 * 14 12 10 17 17 H 1.48500 * 109.46846 * 329.99741 * 14 12 10 18 18 H 1.09002 * 109.46841 * 60.00489 * 1 2 3 19 19 H 1.09003 * 109.47268 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47206 * 300.00166 * 1 2 3 21 21 H 1.09005 * 109.46933 * 239.99478 * 2 1 3 22 22 H 1.09008 * 109.47083 * 120.00172 * 2 1 3 23 23 H 1.08002 * 126.06524 * 359.97057 * 4 3 2 24 24 H 0.97000 * 119.99552 * 180.02562 * 6 5 4 25 25 H 0.96995 * 120.00447 * 0.02562 * 6 5 4 26 26 H 1.08997 * 109.46908 * 29.71287 * 9 8 3 27 27 H 1.08993 * 109.47560 * 149.71724 * 9 8 3 28 28 H 0.97004 * 119.99848 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2080 2.2033 1.0890 5 6 2.6883 3.4484 0.6519 6 7 2.9986 4.5426 1.4679 7 7 2.7942 3.4071 -0.6554 8 7 2.3869 2.1382 -1.0868 9 6 2.3458 1.6736 -2.4756 10 6 3.6671 1.0437 -2.8339 11 1 4.4582 0.9939 -2.1004 12 6 3.8656 0.5299 -4.0978 13 7 5.0189 -0.0194 -4.4107 14 14 2.4970 0.6153 -5.3664 15 1 2.6112 1.8818 -6.1332 16 1 2.6105 -0.5377 -6.2953 17 1 1.1815 0.5696 -4.6790 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8933 -0.5139 -0.8900 22 1 1.8934 -0.5139 0.8900 23 1 2.0125 1.9210 2.1130 24 1 3.3256 5.3655 1.0720 25 1 2.8867 4.4779 2.4292 26 1 1.5498 0.9377 -2.5890 27 1 2.1555 2.5194 -3.1362 28 1 5.1585 -0.3812 -5.2998 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054404803.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:35 Heat of formation + Delta-G solvation = 66.515837 kcal Electronic energy + Delta-G solvation = -12133.158553 eV Core-core repulsion = 9992.464636 eV Total energy + Delta-G solvation = -2140.693917 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.34190 -34.75401 -33.25180 -32.68208 -30.73514 -28.25398 -26.76586 -23.37942 -22.28331 -19.93191 -18.88953 -17.04907 -16.26302 -15.46390 -14.76232 -14.39678 -14.01712 -13.65274 -13.17149 -12.78531 -12.41375 -11.95271 -11.81174 -11.29677 -11.11157 -10.73921 -10.63859 -10.47743 -9.82562 -9.60469 -9.41092 -8.74597 -7.83897 -7.06479 -6.22636 -4.25025 2.84065 3.18035 3.23926 3.25119 3.44535 3.76282 4.24810 4.51191 5.06230 5.21981 5.45591 5.66651 5.80500 6.01258 6.17122 6.21655 6.31950 6.44906 6.57305 6.68901 6.84466 7.08104 7.35006 7.96070 8.02537 8.14625 8.38578 8.82918 8.92933 9.33320 10.90023 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.036474 B = 0.011696 C = 0.010032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.490235 B = 2393.340263 C = 2790.276731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.066 4.066 3 C 0.116 3.884 4 C -0.335 4.335 5 C 0.313 3.687 6 N -0.855 5.855 7 N -0.350 5.350 8 N -0.325 5.325 9 C 0.233 3.767 10 C -0.539 4.539 11 H 0.080 0.920 12 C 0.078 3.922 13 N -0.888 5.888 14 Si 0.873 3.127 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.264 1.264 18 H 0.053 0.947 19 H 0.058 0.942 20 H 0.055 0.945 21 H 0.088 0.912 22 H 0.081 0.919 23 H 0.131 0.869 24 H 0.396 0.604 25 H 0.401 0.599 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.359 1.889 8.716 12.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.016 4.016 4 C -0.368 4.368 5 C 0.055 3.945 6 N -0.407 5.407 7 N -0.182 5.182 8 N -0.105 5.105 9 C 0.114 3.886 10 C -0.577 4.577 11 H 0.098 0.902 12 C -0.126 4.126 13 N -0.526 5.526 14 Si 0.699 3.301 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.189 1.189 18 H 0.072 0.928 19 H 0.077 0.923 20 H 0.074 0.926 21 H 0.106 0.894 22 H 0.100 0.900 23 H 0.149 0.851 24 H 0.223 0.777 25 H 0.230 0.770 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.955 2.294 7.274 11.021 hybrid contribution -0.553 -0.114 0.178 0.592 sum -8.509 2.180 7.452 11.518 Atomic orbital electron populations 1.21701 0.94813 1.01471 1.02006 1.20195 0.95670 0.90403 1.04198 1.20782 0.98625 0.94894 0.87328 1.20459 1.23176 0.94599 0.98520 1.19130 0.96623 0.88710 0.90038 1.41128 1.79194 1.13297 1.07125 1.77342 1.29945 1.01522 1.09373 1.48397 1.47511 1.07540 1.07006 1.19904 0.99107 0.95249 0.74374 1.21223 0.98120 1.38817 0.99562 0.90158 1.24819 0.95680 0.94362 0.97738 1.69882 1.23117 1.38437 1.21114 0.86895 0.82611 0.78520 0.82038 1.19648 1.20575 1.18871 0.92830 0.92286 0.92583 0.89385 0.90017 0.85085 0.77663 0.76999 0.93555 0.93869 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.90 37.16 0.37 -1.59 15 2 C -0.07 -1.09 6.03 -27.88 -0.17 -1.26 15 3 C 0.12 2.37 6.18 -82.28 -0.51 1.86 15 4 C -0.33 -6.34 10.74 -39.82 -0.43 -6.77 15 5 C 0.31 6.26 8.46 -154.56 -1.31 4.95 15 6 N -0.86 -12.63 9.15 31.39 0.29 -12.34 15 7 N -0.35 -8.29 12.59 31.41 0.40 -7.89 15 8 N -0.33 -7.71 3.59 -58.33 -0.21 -7.92 15 9 C 0.23 5.77 4.85 -5.19 -0.03 5.74 15 10 C -0.54 -15.42 9.94 -34.44 -0.34 -15.76 15 11 H 0.08 2.60 8.06 -52.48 -0.42 2.17 15 12 C 0.08 2.21 5.47 -17.82 -0.10 2.11 15 13 N -0.89 -26.74 13.96 55.43 0.77 -25.96 15 14 Si 0.87 20.50 27.47 -169.99 -4.67 15.83 15 15 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 17 H -0.26 -5.80 6.54 56.52 0.37 -5.43 15 18 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 19 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 20 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 21 H 0.09 1.61 7.49 -51.93 -0.39 1.22 15 22 H 0.08 1.18 8.14 -51.92 -0.42 0.75 15 23 H 0.13 2.07 8.06 -52.49 -0.42 1.65 15 24 H 0.40 5.33 8.96 -40.82 -0.37 4.97 15 25 H 0.40 4.57 8.96 -40.82 -0.37 4.20 15 26 H 0.05 1.07 6.59 -51.93 -0.34 0.73 15 27 H 0.04 1.08 7.57 -51.93 -0.39 0.68 15 28 H 0.27 7.47 8.31 -40.82 -0.34 7.13 15 LS Contribution 245.62 15.07 3.70 3.70 Total: -1.00 -32.52 245.62 -5.79 -38.31 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -3.56 Total: 6.99 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -2.51 Total: -10.71 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 1.25 Total: -54.11 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.83 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -32.52 -5.79 -38.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054404803.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.823 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds