Wall clock time and date at job start Mon Mar 30 2020 02:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.36884 * 126.59289 * 2 1 4 4 H 0.96993 * 126.39532 * 0.02562 * 3 2 1 5 5 C 1.35039 * 107.20369 * 180.02562 * 3 2 1 6 6 N 1.30496 * 108.70255 * 359.76718 * 5 3 2 7 7 C 1.34126 * 109.25782 * 0.37984 * 6 5 3 8 8 C 1.50697 * 125.99315 * 179.88415 * 7 6 5 9 9 N 1.46905 * 109.47066 * 269.69281 * 8 7 6 10 10 C 1.46901 * 110.99870 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.46943 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00162 * 359.97438 * 11 10 9 13 13 C 1.37883 * 120.00023 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99982 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99630 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.46926 * 90.00445 * 15 13 11 17 17 H 1.48506 * 109.46987 * 209.99731 * 15 13 11 18 18 H 1.48494 * 109.47527 * 330.00217 * 15 13 11 19 19 H 1.09000 * 109.47065 * 269.97458 * 1 2 3 20 20 H 1.09006 * 109.47201 * 29.97189 * 1 2 3 21 21 H 1.09004 * 109.47247 * 149.97077 * 1 2 3 22 22 H 1.08001 * 125.64940 * 180.02562 * 5 3 2 23 23 H 1.09001 * 109.47558 * 149.69445 * 8 7 6 24 24 H 1.08998 * 109.47216 * 29.69107 * 8 7 6 25 25 H 1.00901 * 110.99869 * 56.04737 * 9 8 7 26 26 H 1.09004 * 109.47031 * 299.99620 * 10 9 8 27 27 H 1.08995 * 109.47111 * 59.99900 * 10 9 8 28 28 H 0.97002 * 119.99560 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3230 1.0990 0.0000 4 1 2.0392 2.0265 0.0003 5 6 3.5968 0.6507 -0.0006 6 7 3.5811 -0.6541 0.0041 7 6 2.3097 -1.0813 -0.0006 8 6 1.8586 -2.5192 0.0000 9 7 1.7108 -2.9865 -1.3849 10 6 1.2705 -4.3875 -1.4235 11 6 1.1310 -4.8308 -2.8571 12 1 1.3472 -4.1407 -3.6592 13 6 0.7261 -6.1171 -3.1446 14 7 0.6038 -6.5038 -4.3956 15 14 0.3513 -7.3104 -1.7572 16 1 -1.0835 -7.2064 -1.3889 17 1 0.6491 -8.6957 -2.2017 18 1 1.1903 -6.9778 -0.5779 19 1 -0.3633 -0.0005 1.0277 20 1 -0.3634 0.8903 -0.5134 21 1 -0.3634 -0.8897 -0.5143 22 1 4.4819 1.2696 -0.0003 23 1 0.9010 -2.5994 0.5146 24 1 2.5994 -3.1322 0.5132 25 1 2.5683 -2.8623 -1.9019 26 1 2.0070 -5.0138 -0.9200 27 1 0.3089 -4.4802 -0.9189 28 1 0.3187 -7.4086 -4.5979 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054794365.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:30 Heat of formation + Delta-G solvation = 52.053346 kcal Electronic energy + Delta-G solvation = -11769.295586 eV Core-core repulsion = 9627.974528 eV Total energy + Delta-G solvation = -2141.321058 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.88215 -35.47346 -32.74766 -32.44992 -31.31464 -28.11843 -26.10149 -23.86466 -21.50323 -20.98291 -19.35483 -17.60479 -16.64294 -15.17293 -15.14044 -14.35325 -13.73928 -13.44595 -13.20916 -12.76847 -12.67123 -12.35896 -12.23745 -11.53914 -11.30119 -10.59496 -10.51067 -9.89303 -9.73833 -9.66034 -9.22165 -8.52622 -8.04131 -7.33173 -5.99558 -3.96926 2.18300 3.22457 3.30308 3.34042 3.41036 3.44733 4.48138 4.72174 5.07313 5.24576 5.33290 5.42125 5.57030 5.60881 5.71738 6.07739 6.17689 6.28520 6.44479 6.85226 6.93619 7.12420 7.51134 7.68006 7.99284 8.26376 8.45889 8.73365 9.09251 9.62668 11.13877 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.062357 B = 0.007430 C = 0.007356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.920682 B = 3767.365247 C = 3805.421746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.010 4.010 3 N -0.573 5.573 4 H 0.415 0.585 5 C 0.172 3.828 6 N -0.488 5.488 7 C 0.016 3.984 8 C 0.138 3.862 9 N -0.675 5.675 10 C 0.163 3.837 11 C -0.513 4.513 12 H 0.078 0.922 13 C 0.067 3.933 14 N -0.902 5.902 15 Si 0.878 3.122 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.267 1.267 19 H 0.067 0.933 20 H 0.060 0.940 21 H 0.095 0.905 22 H 0.204 0.796 23 H 0.074 0.926 24 H 0.032 0.968 25 H 0.339 0.661 26 H -0.015 1.015 27 H 0.022 0.978 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.218 14.547 10.768 18.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 N -0.178 5.178 4 H 0.252 0.748 5 C -0.111 4.111 6 N -0.207 5.207 7 C -0.113 4.113 8 C 0.007 3.993 9 N -0.306 5.306 10 C 0.035 3.965 11 C -0.551 4.551 12 H 0.096 0.904 13 C -0.134 4.134 14 N -0.541 5.541 15 Si 0.705 3.295 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.191 1.191 19 H 0.085 0.915 20 H 0.079 0.921 21 H 0.114 0.886 22 H 0.220 0.780 23 H 0.093 0.907 24 H 0.050 0.950 25 H 0.156 0.844 26 H 0.003 0.997 27 H 0.040 0.960 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.235 14.050 10.596 17.641 hybrid contribution -0.101 -0.061 0.840 0.849 sum 1.133 13.989 11.436 18.104 Atomic orbital electron populations 1.20259 0.87036 1.04098 1.02195 1.21058 0.94466 0.86528 1.10535 1.43210 1.07607 1.09039 1.57915 0.74842 1.24813 0.87297 0.92006 1.06988 1.70154 1.22652 1.09018 1.18892 1.20532 0.88201 0.95661 1.06875 1.20117 0.98906 0.87640 0.92600 1.60526 1.37225 1.23187 1.09666 1.20013 0.94507 0.83856 0.98087 1.21073 1.45354 0.97634 0.91078 0.90353 1.24908 0.95140 0.97957 0.95392 1.69908 1.48006 1.18623 1.17613 0.86814 0.79095 0.80526 0.83041 1.20179 1.21291 1.19141 0.91470 0.92108 0.88625 0.77951 0.90739 0.94986 0.84355 0.99734 0.95978 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.05 36.00 0.36 -0.55 15 2 C -0.01 -0.15 7.24 -81.60 -0.59 -0.74 15 3 N -0.57 -6.31 6.15 -10.30 -0.06 -6.38 15 4 H 0.41 2.86 8.96 -40.82 -0.37 2.50 15 5 C 0.17 2.14 13.04 -90.38 -1.18 0.96 15 6 N -0.49 -8.34 11.25 -10.88 -0.12 -8.46 15 7 C 0.02 0.28 6.60 -82.85 -0.55 -0.27 15 8 C 0.14 2.61 5.85 -4.97 -0.03 2.58 15 9 N -0.67 -15.06 6.48 -116.34 -0.75 -15.82 15 10 C 0.16 4.12 4.51 -4.98 -0.02 4.10 15 11 C -0.51 -15.15 9.87 -34.44 -0.34 -15.49 15 12 H 0.08 2.51 8.06 -52.49 -0.42 2.09 15 13 C 0.07 2.00 5.47 -17.82 -0.10 1.91 15 14 N -0.90 -28.30 13.96 55.43 0.77 -27.52 15 15 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 15 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 15 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 18 H -0.27 -6.48 6.54 56.52 0.37 -6.11 15 19 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 20 H 0.06 0.58 8.14 -51.93 -0.42 0.16 15 21 H 0.10 1.31 7.81 -51.93 -0.41 0.90 15 22 H 0.20 1.60 8.06 -52.49 -0.42 1.18 15 23 H 0.07 1.30 7.80 -51.93 -0.40 0.89 15 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 15 25 H 0.34 7.80 8.72 -39.29 -0.34 7.46 15 26 H -0.01 -0.38 7.20 -51.93 -0.37 -0.76 15 27 H 0.02 0.55 7.57 -51.93 -0.39 0.16 15 28 H 0.26 7.69 8.31 -40.82 -0.34 7.35 15 LS Contribution 245.60 15.07 3.70 3.70 Total: -1.00 -34.28 245.60 -7.14 -41.42 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -3.57 Total: 3.21 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -2.44 Total: -7.49 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: -0.17 Total: -58.18 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -34.28 -7.14 -41.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054794365.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.473 kcal (2) G-P(sol) polarization free energy of solvation -34.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds