Wall clock time and date at job start Mon Mar 30 2020 02:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30499 * 125.65228 * 2 1 4 4 C 1.34129 * 109.25449 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.98677 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.46738 * 274.97102 * 5 4 3 7 7 C 1.46900 * 111.00157 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47485 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00209 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00196 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99933 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00083 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47039 * 60.00142 * 12 10 8 14 14 H 1.48499 * 109.47029 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.46992 * 300.00026 * 12 10 8 16 16 C 1.34671 * 108.02244 * 359.73194 * 4 3 2 17 17 N 1.35049 * 125.64575 * 179.97438 * 2 1 3 18 18 H 0.97001 * 126.39625 * 0.03039 * 17 2 1 19 19 H 1.09002 * 109.46939 * 270.04438 * 1 2 3 20 20 H 1.08999 * 109.46843 * 30.04102 * 1 2 3 21 21 H 1.08991 * 109.47344 * 150.04095 * 1 2 3 22 22 H 1.08990 * 109.47202 * 34.97006 * 5 4 3 23 23 H 1.08996 * 109.47001 * 154.97717 * 5 4 3 24 24 H 1.00895 * 111.00679 * 303.95882 * 6 5 4 25 25 H 1.09000 * 109.47273 * 300.00930 * 7 6 5 26 26 H 1.09005 * 109.46503 * 60.00375 * 7 6 5 27 27 H 0.97000 * 119.99953 * 179.97438 * 11 10 8 28 28 H 1.07996 * 126.59545 * 180.28631 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5544 0.6817 0.0006 5 6 4.7481 1.6016 0.0013 6 7 5.0633 1.9957 -1.3783 7 6 6.2241 2.8952 -1.4167 8 6 6.5163 3.2776 -2.8447 9 1 5.9015 2.8908 -3.6440 10 6 7.5692 4.1205 -3.1311 11 7 8.3188 4.5903 -2.1580 12 14 7.9318 4.5940 -4.9013 13 1 6.7517 5.2845 -5.4806 14 1 9.1059 5.5024 -4.9402 15 1 8.2265 3.3709 -5.6904 16 6 3.5925 -0.6644 0.0069 17 7 2.2940 -1.0975 0.0005 18 1 1.9950 -2.0202 0.0005 19 1 -0.3633 0.0008 1.0277 20 1 -0.3633 0.8896 -0.5145 21 1 -0.3633 -0.8903 -0.5131 22 1 4.5217 2.4902 0.5903 23 1 5.6040 1.0856 0.4363 24 1 5.2139 1.1855 -1.9605 25 1 6.0076 3.7928 -0.8375 26 1 7.0905 2.3885 -0.9913 27 1 9.0598 5.1830 -2.3595 28 1 4.4775 -1.2834 0.0133 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054821543.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:27 Heat of formation + Delta-G solvation = 49.763501 kcal Electronic energy + Delta-G solvation = -11550.445340 eV Core-core repulsion = 9409.024986 eV Total energy + Delta-G solvation = -2141.420353 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.82650 -35.33553 -32.79125 -31.99729 -31.42955 -28.12442 -26.09109 -23.90843 -21.34017 -20.71677 -19.82555 -17.56945 -16.22034 -15.20240 -14.68455 -14.38434 -13.81040 -13.71618 -13.21192 -12.82621 -12.58134 -12.38146 -11.90823 -11.25435 -11.09532 -10.68068 -10.60927 -9.97352 -9.63292 -9.62415 -9.12699 -8.40398 -8.08556 -7.13003 -5.95679 -3.97035 2.20096 3.23938 3.34552 3.38979 3.42221 3.46475 4.49654 4.54225 5.04052 5.33193 5.39437 5.39926 5.45722 5.62935 5.77275 5.91601 6.18995 6.32430 6.46669 6.98925 7.35097 7.49985 7.54499 7.87237 8.21873 8.38688 8.52904 8.72750 9.12247 9.67247 11.15498 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.071114 B = 0.006331 C = 0.006139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.638619 B = 4421.602028 C = 4559.751646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.194 3.806 3 N -0.469 5.469 4 C 0.029 3.971 5 C 0.139 3.861 6 N -0.681 5.681 7 C 0.194 3.806 8 C -0.512 4.512 9 H 0.061 0.939 10 C 0.055 3.945 11 N -0.899 5.899 12 Si 0.900 3.100 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.278 1.278 16 C -0.063 4.063 17 N -0.572 5.572 18 H 0.413 0.587 19 H 0.076 0.924 20 H 0.090 0.910 21 H 0.069 0.931 22 H 0.076 0.924 23 H 0.030 0.970 24 H 0.326 0.674 25 H 0.030 0.970 26 H -0.014 1.014 27 H 0.261 0.739 28 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.591 -12.555 4.912 17.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.070 4.070 3 N -0.190 5.190 4 C -0.101 4.101 5 C 0.008 3.992 6 N -0.312 5.312 7 C 0.067 3.933 8 C -0.551 4.551 9 H 0.079 0.921 10 C -0.146 4.146 11 N -0.539 5.539 12 Si 0.728 3.272 13 H -0.201 1.201 14 H -0.214 1.214 15 H -0.203 1.203 16 C -0.197 4.197 17 N -0.176 5.176 18 H 0.250 0.750 19 H 0.095 0.905 20 H 0.109 0.891 21 H 0.088 0.912 22 H 0.095 0.905 23 H 0.048 0.952 24 H 0.143 0.857 25 H 0.048 0.952 26 H 0.004 0.996 27 H 0.071 0.929 28 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -12.125 -11.036 4.941 17.123 hybrid contribution 1.261 -1.654 -0.745 2.209 sum -10.863 -12.689 4.196 17.223 Atomic orbital electron populations 1.20124 0.85177 1.03854 1.03140 1.23337 0.95584 0.81858 1.06221 1.70176 1.01990 1.28161 1.18666 1.20872 0.93050 0.91386 1.04795 1.20113 0.90030 0.95872 0.93183 1.60597 1.43873 1.20245 1.06495 1.19572 0.84887 0.91369 0.97445 1.21163 1.12854 1.28401 0.92637 0.92056 1.24987 0.96048 0.96119 0.97463 1.69957 1.18872 1.33511 1.31541 0.86538 0.77631 0.78301 0.84777 1.20147 1.21376 1.20343 1.22514 0.86904 0.96673 1.13583 1.43151 1.06766 1.09561 1.58138 0.74962 0.90508 0.89142 0.91202 0.90525 0.95164 0.85731 0.95236 0.99597 0.92917 0.80932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.51 36.01 0.38 -0.20 15 2 C 0.19 2.68 8.15 -155.41 -1.27 1.41 15 3 N -0.47 -8.66 11.25 -7.07 -0.08 -8.74 15 4 C 0.03 0.52 6.60 -82.85 -0.55 -0.03 15 5 C 0.14 2.78 6.22 -4.97 -0.03 2.75 15 6 N -0.68 -16.05 6.48 -116.34 -0.75 -16.80 15 7 C 0.19 5.35 5.44 -4.98 -0.03 5.32 15 8 C -0.51 -15.15 9.32 -34.44 -0.32 -15.47 15 9 H 0.06 1.79 7.81 -52.49 -0.41 1.38 15 10 C 0.05 1.62 5.46 -17.82 -0.10 1.52 15 11 N -0.90 -27.59 13.29 55.43 0.74 -26.85 15 12 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 15 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 16 C -0.06 -0.89 11.94 -16.56 -0.20 -1.09 15 17 N -0.57 -6.61 6.15 -10.23 -0.06 -6.67 15 18 H 0.41 3.01 8.96 -40.82 -0.37 2.64 15 19 H 0.08 0.58 8.14 -51.93 -0.42 0.16 15 20 H 0.09 0.87 8.14 -51.93 -0.42 0.44 15 21 H 0.07 0.44 8.14 -51.93 -0.42 0.02 15 22 H 0.08 1.62 8.14 -51.93 -0.42 1.19 15 23 H 0.03 0.56 8.14 -51.93 -0.42 0.14 15 24 H 0.33 7.32 8.72 -39.29 -0.34 6.98 15 25 H 0.03 0.88 8.14 -51.93 -0.42 0.45 15 26 H -0.01 -0.39 8.14 -51.93 -0.42 -0.81 15 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 15 28 H 0.17 1.94 8.06 -52.49 -0.42 1.52 15 LS Contribution 250.52 15.07 3.78 3.78 Total: -1.00 -34.63 250.52 -7.15 -41.78 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -3.64 Total: 1.98 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -2.11 Total: -5.78 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.16 Total: -59.06 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -34.63 -7.15 -41.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054821543.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.539 kcal (2) G-P(sol) polarization free energy of solvation -34.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds