Wall clock time and date at job start Mon Mar 30 2020 02:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30499 * 125.65228 * 2 1 4 4 C 1.34129 * 109.25449 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.98677 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.46738 * 274.97102 * 5 4 3 7 7 C 1.46900 * 111.00157 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47485 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00209 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00196 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99933 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00083 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47039 * 60.00142 * 12 10 8 14 14 H 1.48499 * 109.47029 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.46992 * 300.00026 * 12 10 8 16 16 C 1.34671 * 108.02244 * 359.73194 * 4 3 2 17 17 N 1.35049 * 125.64575 * 179.97438 * 2 1 3 18 18 H 0.97001 * 126.39625 * 0.03039 * 17 2 1 19 19 H 1.09002 * 109.46939 * 270.04438 * 1 2 3 20 20 H 1.08999 * 109.46843 * 30.04102 * 1 2 3 21 21 H 1.08991 * 109.47344 * 150.04095 * 1 2 3 22 22 H 1.08990 * 109.47202 * 34.97006 * 5 4 3 23 23 H 1.08996 * 109.47001 * 154.97717 * 5 4 3 24 24 H 1.00895 * 111.00679 * 303.95882 * 6 5 4 25 25 H 1.09000 * 109.47273 * 300.00930 * 7 6 5 26 26 H 1.09005 * 109.46503 * 60.00375 * 7 6 5 27 27 H 0.97000 * 119.99953 * 179.97438 * 11 10 8 28 28 H 1.07996 * 126.59545 * 180.28631 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5544 0.6817 0.0006 5 6 4.7481 1.6016 0.0013 6 7 5.0633 1.9957 -1.3783 7 6 6.2241 2.8952 -1.4167 8 6 6.5163 3.2776 -2.8447 9 1 5.9015 2.8908 -3.6440 10 6 7.5692 4.1205 -3.1311 11 7 8.3188 4.5903 -2.1580 12 14 7.9318 4.5940 -4.9013 13 1 6.7517 5.2845 -5.4806 14 1 9.1059 5.5024 -4.9402 15 1 8.2265 3.3709 -5.6904 16 6 3.5925 -0.6644 0.0069 17 7 2.2940 -1.0975 0.0005 18 1 1.9950 -2.0202 0.0005 19 1 -0.3633 0.0008 1.0277 20 1 -0.3633 0.8896 -0.5145 21 1 -0.3633 -0.8903 -0.5131 22 1 4.5217 2.4902 0.5903 23 1 5.6040 1.0856 0.4363 24 1 5.2139 1.1855 -1.9605 25 1 6.0076 3.7928 -0.8375 26 1 7.0905 2.3885 -0.9913 27 1 9.0598 5.1830 -2.3595 28 1 4.4775 -1.2834 0.0133 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054821543.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:27 Heat of formation + Delta-G solvation = 23.141353 kcal Electronic energy + Delta-G solvation = -11551.599763 eV Core-core repulsion = 9409.024986 eV Total energy + Delta-G solvation = -2142.574776 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.94104 -37.19413 -34.74452 -33.33046 -32.58577 -29.76336 -27.65883 -25.54187 -23.43337 -21.80653 -21.08406 -18.88579 -18.22639 -16.73826 -16.32162 -16.05145 -15.15172 -15.04982 -14.90556 -14.27254 -13.79156 -13.42748 -13.31569 -13.02553 -12.94521 -12.58771 -12.56038 -12.02635 -11.37024 -10.87178 -10.81725 -10.64958 -9.28202 -9.02430 -8.21317 -6.33070 1.12513 1.41155 1.45858 1.53844 2.10692 2.31638 2.42049 3.11164 3.51826 3.81451 4.17863 4.25086 4.48737 4.57315 4.70075 4.80044 4.99787 5.09064 5.14492 5.19781 5.27413 5.61136 5.76945 6.02889 6.47538 6.65003 6.73486 6.89934 7.26924 7.37543 8.90146 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.071114 B = 0.006331 C = 0.006139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.638619 B = 4421.602028 C = 4559.751646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.198 3.802 3 N -0.528 5.528 4 C -0.019 4.019 5 C 0.144 3.856 6 N -0.685 5.685 7 C 0.209 3.791 8 C -0.538 4.538 9 H 0.062 0.938 10 C 0.001 3.999 11 N -0.934 5.934 12 Si 0.976 3.024 13 H -0.270 1.270 14 H -0.280 1.280 15 H -0.264 1.264 16 C -0.039 4.039 17 N -0.552 5.552 18 H 0.437 0.563 19 H 0.095 0.905 20 H 0.081 0.919 21 H 0.103 0.897 22 H 0.053 0.947 23 H 0.044 0.956 24 H 0.334 0.666 25 H -0.003 1.003 26 H -0.032 1.032 27 H 0.266 0.734 28 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.545 -14.400 3.922 19.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.067 4.067 3 N -0.250 5.250 4 C -0.147 4.147 5 C 0.014 3.986 6 N -0.316 5.316 7 C 0.081 3.919 8 C -0.576 4.576 9 H 0.080 0.920 10 C -0.197 4.197 11 N -0.574 5.574 12 Si 0.800 3.200 13 H -0.196 1.196 14 H -0.205 1.205 15 H -0.189 1.189 16 C -0.174 4.174 17 N -0.158 5.158 18 H 0.279 0.721 19 H 0.113 0.887 20 H 0.100 0.900 21 H 0.122 0.878 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.151 0.849 25 H 0.015 0.985 26 H -0.014 1.014 27 H 0.075 0.925 28 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -13.108 -12.931 3.962 18.834 hybrid contribution 1.486 -1.135 -0.357 1.904 sum -11.621 -14.067 3.605 18.599 Atomic orbital electron populations 1.20323 0.81940 1.05104 1.04720 1.24080 0.97232 0.81376 1.04040 1.70065 1.02719 1.31033 1.21141 1.20586 0.92412 0.92675 1.09042 1.19970 0.91975 0.95842 0.90781 1.60461 1.41604 1.20478 1.09049 1.19222 0.85597 0.90813 0.96258 1.21496 1.13521 1.29266 0.93337 0.92014 1.25983 0.95521 0.95643 1.02577 1.70088 1.19305 1.33866 1.34117 0.85340 0.77642 0.78428 0.78590 1.19556 1.20501 1.18867 1.22799 0.88689 0.95440 1.10497 1.43080 1.05585 1.10548 1.56590 0.72097 0.88671 0.90025 0.87789 0.92885 0.93787 0.84910 0.98524 1.01425 0.92513 0.77947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.51 71.24 0.75 -0.21 15 2 C 0.20 5.07 8.15 138.13 1.13 6.19 15 3 N -0.53 -19.42 11.25 -176.28 -1.98 -21.40 15 4 C -0.02 -0.68 6.60 41.39 0.27 -0.40 15 5 C 0.14 5.99 6.22 85.56 0.53 6.52 15 6 N -0.68 -33.19 6.48 -522.00 -3.38 -36.58 15 7 C 0.21 11.99 5.44 85.56 0.47 12.46 15 8 C -0.54 -32.39 9.32 25.60 0.24 -32.15 15 9 H 0.06 3.63 7.81 -2.91 -0.02 3.60 15 10 C 0.00 0.06 5.46 84.66 0.46 0.52 15 11 N -0.93 -58.16 13.29 21.45 0.28 -57.88 15 12 Si 0.98 45.69 29.54 68.60 2.03 47.72 15 13 H -0.27 -12.36 7.11 99.48 0.71 -11.66 15 14 H -0.28 -12.63 7.11 99.48 0.71 -11.93 15 15 H -0.26 -11.72 7.11 99.48 0.71 -11.01 15 16 C -0.04 -1.01 11.94 83.09 0.99 -0.01 15 17 N -0.55 -11.04 6.15 -186.27 -1.15 -12.19 15 18 H 0.44 4.53 8.96 -92.71 -0.83 3.70 15 19 H 0.09 1.14 8.14 -2.39 -0.02 1.12 15 20 H 0.08 1.42 8.14 -2.39 -0.02 1.40 15 21 H 0.10 0.88 8.14 -2.39 -0.02 0.86 15 22 H 0.05 2.38 8.14 -2.39 -0.02 2.37 15 23 H 0.04 1.67 8.14 -2.39 -0.02 1.65 15 24 H 0.33 15.15 8.72 -89.70 -0.78 14.37 15 25 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 15 26 H -0.03 -1.90 8.14 -2.38 -0.02 -1.92 15 27 H 0.27 15.48 8.31 -92.71 -0.77 14.71 15 28 H 0.20 3.88 8.06 -2.91 -0.02 3.85 15 Total: -1.00 -76.71 250.52 0.19 -76.52 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -0.44 Total: 10.89 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 4.84 Total: -7.08 kcal Atomic # 7 Polarization: -121.81 SS G_CDS: -6.23 Total: -128.04 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -76.71 0.19 -76.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054821543.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.659 kcal (2) G-P(sol) polarization free energy of solvation -76.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds