Wall clock time and date at job start Mon Mar 30 2020 02:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.06821 * 2 1 4 4 C 1.40428 * 107.86169 * 179.90447 * 3 2 1 5 5 N 1.39992 * 125.97582 * 180.14339 * 4 3 2 6 6 N 1.31220 * 108.04909 * 0.36555 * 4 3 2 7 7 N 1.34960 * 126.06853 * 180.31556 * 2 1 3 8 8 C 1.46498 * 125.97191 * 359.96192 * 7 2 1 9 9 C 1.53002 * 109.47298 * 90.00287 * 8 7 2 10 10 C 1.50704 * 109.47088 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00278 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99596 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00438 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99694 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47502 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46924 * 120.00655 * 14 12 10 17 17 H 1.48503 * 109.47206 * 239.99881 * 14 12 10 18 18 H 1.09002 * 109.47152 * 269.68518 * 1 2 3 19 19 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 20 20 H 1.09004 * 109.47113 * 29.68599 * 1 2 3 21 21 H 1.08003 * 126.06901 * 0.04432 * 3 2 1 22 22 H 0.97003 * 119.99728 * 180.23305 * 5 4 3 23 23 H 0.96999 * 120.00238 * 0.24132 * 5 4 3 24 24 H 1.09006 * 109.47531 * 210.00084 * 8 7 2 25 25 H 1.09008 * 109.47462 * 330.00263 * 8 7 2 26 26 H 1.09005 * 109.46944 * 299.99861 * 9 8 7 27 27 H 1.08998 * 109.47431 * 59.99587 * 9 8 7 28 28 H 0.96993 * 120.00412 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6372 0.6544 0.0022 5 7 4.7724 1.4737 0.0058 6 7 3.6337 -0.6577 -0.0044 7 7 2.3016 -1.0909 -0.0060 8 6 1.8499 -2.4845 -0.0129 9 6 1.6919 -2.9623 -1.4578 10 6 1.2266 -4.3957 -1.4648 11 1 1.0606 -4.9142 -0.5321 12 6 1.0129 -5.0452 -2.6621 13 7 1.2155 -4.4140 -3.7980 14 14 0.4368 -6.8221 -2.6708 15 1 0.2849 -7.3002 -1.2732 16 1 -0.8699 -6.9154 -3.3703 17 1 1.4369 -7.6632 -3.3763 18 1 -0.3633 -0.0056 1.0277 19 1 -0.3633 -0.8872 -0.5187 20 1 -0.3633 0.8928 -0.5090 21 1 1.9720 2.1212 0.0007 22 1 5.6573 1.0763 0.0037 23 1 4.6741 2.4387 0.0105 24 1 2.5847 -3.1072 0.4974 25 1 0.8914 -2.5584 0.5011 26 1 0.9570 -2.3396 -1.9681 27 1 2.6502 -2.8884 -1.9718 28 1 1.0655 -4.8710 -4.6402 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067799588.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:42 Heat of formation + Delta-G solvation = 62.216502 kcal Electronic energy + Delta-G solvation = -11880.478903 eV Core-core repulsion = 9739.598552 eV Total energy + Delta-G solvation = -2140.880351 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.54964 -34.96668 -33.41016 -31.56892 -31.29517 -28.15554 -26.48670 -24.52003 -21.43051 -20.19144 -19.13749 -16.73686 -16.06195 -15.48139 -14.79148 -14.73701 -14.27390 -13.54283 -12.71792 -12.58353 -12.43887 -12.29625 -11.74998 -11.45869 -11.01695 -10.82335 -10.33380 -10.15089 -9.80733 -9.52799 -9.28386 -8.44713 -8.04994 -7.28721 -6.08534 -4.13810 2.57108 3.13634 3.27060 3.34935 3.38616 3.55545 4.30243 4.41357 5.15323 5.27515 5.45450 5.69361 5.82367 6.08700 6.10348 6.21776 6.26543 6.57169 6.59933 6.84604 7.51807 7.57039 7.74620 7.83315 7.92942 7.98413 8.25408 8.69149 8.92657 9.51025 11.02638 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.058083 B = 0.007983 C = 0.007567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.956051 B = 3506.777815 C = 3699.238450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.109 3.891 3 C -0.330 4.330 4 C 0.320 3.680 5 N -0.853 5.853 6 N -0.352 5.352 7 N -0.348 5.348 8 C 0.134 3.866 9 C 0.012 3.988 10 C -0.526 4.526 11 H 0.060 0.940 12 C 0.061 3.939 13 N -0.890 5.890 14 Si 0.897 3.103 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.283 1.283 18 H 0.074 0.926 19 H 0.080 0.920 20 H 0.079 0.921 21 H 0.135 0.865 22 H 0.397 0.603 23 H 0.403 0.597 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.021 0.979 27 H 0.026 0.974 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.212 9.551 7.134 11.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.022 4.022 3 C -0.363 4.363 4 C 0.062 3.938 5 N -0.405 5.405 6 N -0.184 5.184 7 N -0.129 5.129 8 C 0.014 3.986 9 C -0.026 4.026 10 C -0.565 4.565 11 H 0.078 0.922 12 C -0.142 4.142 13 N -0.528 5.528 14 Si 0.724 3.276 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.209 1.209 18 H 0.093 0.907 19 H 0.099 0.901 20 H 0.098 0.902 21 H 0.153 0.847 22 H 0.225 0.775 23 H 0.232 0.768 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.765 8.255 6.945 10.815 hybrid contribution -0.419 0.015 -0.231 0.479 sum 0.345 8.270 6.714 10.658 Atomic orbital electron populations 1.20462 0.87928 1.04170 1.02737 1.20909 0.94568 0.87242 0.99505 1.20560 0.90700 0.98551 1.26471 1.19151 0.87865 0.89850 0.96960 1.41178 1.04253 1.06637 1.88481 1.77361 0.97881 1.09320 1.33804 1.48596 1.02093 1.06517 1.55688 1.22162 0.98768 0.74997 1.02668 1.19464 0.98262 0.96221 0.88607 1.21068 1.46051 0.96636 0.92732 0.92190 1.25004 0.95296 0.98353 0.95501 1.69988 1.48500 1.36952 0.97384 0.86464 0.78354 0.84555 0.78200 1.19594 1.20910 1.20902 0.90742 0.90143 0.90231 0.84709 0.77474 0.76798 0.90058 0.90180 0.96055 0.95561 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.35 9.89 36.01 0.36 -0.99 15 2 C 0.11 1.99 6.92 -82.28 -0.57 1.42 15 3 C -0.33 -5.69 10.74 -39.82 -0.43 -6.12 15 4 C 0.32 5.87 8.46 -154.55 -1.31 4.57 15 5 N -0.85 -11.46 9.15 31.39 0.29 -11.17 15 6 N -0.35 -7.60 12.59 31.41 0.40 -7.20 15 7 N -0.35 -7.33 3.61 -57.15 -0.21 -7.54 15 8 C 0.13 2.88 5.99 -4.04 -0.02 2.86 15 9 C 0.01 0.32 5.30 -27.88 -0.15 0.18 15 10 C -0.53 -14.59 9.11 -34.44 -0.31 -14.90 15 11 H 0.06 1.58 7.74 -52.49 -0.41 1.17 15 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 13 N -0.89 -26.73 13.29 55.43 0.74 -26.00 15 14 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 15 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 17 H -0.28 -6.71 7.11 56.52 0.40 -6.30 15 18 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 19 H 0.08 1.25 7.71 -51.93 -0.40 0.85 15 20 H 0.08 0.96 8.14 -51.93 -0.42 0.54 15 21 H 0.14 1.91 8.06 -52.48 -0.42 1.48 15 22 H 0.40 4.85 8.96 -40.82 -0.37 4.49 15 23 H 0.40 4.09 8.96 -40.82 -0.37 3.72 15 24 H 0.08 1.74 8.14 -51.93 -0.42 1.32 15 25 H 0.08 1.53 7.65 -51.92 -0.40 1.14 15 26 H 0.02 0.59 8.14 -51.93 -0.42 0.16 15 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 28 H 0.26 7.38 8.31 -40.82 -0.34 7.05 15 LS Contribution 249.46 15.07 3.76 3.76 Total: -1.00 -32.70 249.46 -6.19 -38.88 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -3.61 Total: 4.35 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -2.53 Total: -11.36 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 1.21 Total: -51.91 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -32.70 -6.19 -38.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067799588.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.101 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds