Wall clock time and date at job start Mon Mar 30 2020 02:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.06821 * 2 1 4 4 C 1.40428 * 107.86169 * 179.90447 * 3 2 1 5 5 N 1.39992 * 125.97582 * 180.14339 * 4 3 2 6 6 N 1.31220 * 108.04909 * 0.36555 * 4 3 2 7 7 N 1.34960 * 126.06853 * 180.31556 * 2 1 3 8 8 C 1.46498 * 125.97191 * 359.96192 * 7 2 1 9 9 C 1.53002 * 109.47298 * 90.00287 * 8 7 2 10 10 C 1.50704 * 109.47088 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00278 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99596 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00438 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99694 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47502 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46924 * 120.00655 * 14 12 10 17 17 H 1.48503 * 109.47206 * 239.99881 * 14 12 10 18 18 H 1.09002 * 109.47152 * 269.68518 * 1 2 3 19 19 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 20 20 H 1.09004 * 109.47113 * 29.68599 * 1 2 3 21 21 H 1.08003 * 126.06901 * 0.04432 * 3 2 1 22 22 H 0.97003 * 119.99728 * 180.23305 * 5 4 3 23 23 H 0.96999 * 120.00238 * 0.24132 * 5 4 3 24 24 H 1.09006 * 109.47531 * 210.00084 * 8 7 2 25 25 H 1.09008 * 109.47462 * 330.00263 * 8 7 2 26 26 H 1.09005 * 109.46944 * 299.99861 * 9 8 7 27 27 H 1.08998 * 109.47431 * 59.99587 * 9 8 7 28 28 H 0.96993 * 120.00412 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6372 0.6544 0.0022 5 7 4.7724 1.4737 0.0058 6 7 3.6337 -0.6577 -0.0044 7 7 2.3016 -1.0909 -0.0060 8 6 1.8499 -2.4845 -0.0129 9 6 1.6919 -2.9623 -1.4578 10 6 1.2266 -4.3957 -1.4648 11 1 1.0606 -4.9142 -0.5321 12 6 1.0129 -5.0452 -2.6621 13 7 1.2155 -4.4140 -3.7980 14 14 0.4368 -6.8221 -2.6708 15 1 0.2849 -7.3002 -1.2732 16 1 -0.8699 -6.9154 -3.3703 17 1 1.4369 -7.6632 -3.3763 18 1 -0.3633 -0.0056 1.0277 19 1 -0.3633 -0.8872 -0.5187 20 1 -0.3633 0.8928 -0.5090 21 1 1.9720 2.1212 0.0007 22 1 5.6573 1.0763 0.0037 23 1 4.6741 2.4387 0.0105 24 1 2.5847 -3.1072 0.4974 25 1 0.8914 -2.5584 0.5011 26 1 0.9570 -2.3396 -1.9681 27 1 2.6502 -2.8884 -1.9718 28 1 1.0655 -4.8710 -4.6402 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067799588.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:42 Heat of formation + Delta-G solvation = 39.562098 kcal Electronic energy + Delta-G solvation = -11881.461271 eV Core-core repulsion = 9739.598552 eV Total energy + Delta-G solvation = -2141.862719 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.97594 -36.55900 -35.20816 -33.32612 -32.62684 -29.93082 -27.78959 -26.41816 -23.32745 -21.58175 -20.60520 -18.69753 -17.58457 -16.68728 -16.65517 -16.25659 -15.86733 -15.15729 -14.40765 -14.17643 -13.75925 -13.68431 -13.49986 -12.91493 -12.86570 -12.60486 -12.09418 -12.05698 -11.40299 -11.27574 -11.16331 -10.62935 -9.47642 -8.67097 -8.24335 -6.38950 1.14715 1.41365 1.42229 1.55739 1.70753 2.17900 2.40114 3.09447 3.11250 3.81757 4.03659 4.44088 4.47437 4.65453 4.70129 4.79353 4.84097 5.06405 5.26174 5.39234 5.43725 5.58696 5.72659 6.04486 6.38021 6.66131 6.68207 6.77693 7.31824 7.44059 8.87860 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.058083 B = 0.007983 C = 0.007567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.956051 B = 3506.777815 C = 3699.238450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.099 3.901 3 C -0.332 4.332 4 C 0.317 3.683 5 N -0.835 5.835 6 N -0.406 5.406 7 N -0.373 5.373 8 C 0.150 3.850 9 C 0.025 3.975 10 C -0.542 4.542 11 H 0.074 0.926 12 C 0.002 3.998 13 N -0.934 5.934 14 Si 0.974 3.026 15 H -0.255 1.255 16 H -0.276 1.276 17 H -0.282 1.282 18 H 0.102 0.898 19 H 0.062 0.938 20 H 0.104 0.896 21 H 0.169 0.831 22 H 0.404 0.596 23 H 0.420 0.580 24 H 0.077 0.923 25 H 0.106 0.894 26 H -0.002 1.002 27 H -0.021 1.021 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.702 9.964 8.245 12.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.030 4.030 3 C -0.364 4.364 4 C 0.058 3.942 5 N -0.389 5.389 6 N -0.239 5.239 7 N -0.155 5.155 8 C 0.030 3.970 9 C -0.013 4.013 10 C -0.581 4.581 11 H 0.092 0.908 12 C -0.197 4.197 13 N -0.574 5.574 14 Si 0.798 3.202 15 H -0.179 1.179 16 H -0.201 1.201 17 H -0.208 1.208 18 H 0.120 0.880 19 H 0.081 0.919 20 H 0.123 0.877 21 H 0.187 0.813 22 H 0.233 0.767 23 H 0.253 0.747 24 H 0.095 0.905 25 H 0.124 0.876 26 H 0.016 0.984 27 H -0.003 1.003 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.139 8.722 8.077 11.889 hybrid contribution -0.074 0.027 -0.585 0.590 sum -0.212 8.750 7.492 11.521 Atomic orbital electron populations 1.20593 0.85273 1.04502 1.04586 1.21692 0.96401 0.86687 0.98252 1.21003 0.90005 0.99899 1.25461 1.19590 0.89719 0.89484 0.95443 1.41201 1.03393 1.07221 1.87112 1.77258 0.98785 1.11306 1.36571 1.48459 1.02527 1.06594 1.57968 1.21782 0.99968 0.76020 0.99266 1.19232 0.94808 0.95987 0.91236 1.21519 1.45657 0.97416 0.93468 0.90759 1.26035 0.95227 1.03418 0.94979 1.70138 1.49798 1.39219 0.98231 0.85270 0.77782 0.78232 0.78963 1.17885 1.20139 1.20802 0.87986 0.91934 0.87729 0.81325 0.76732 0.74730 0.90498 0.87562 0.98359 1.00281 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.41 9.89 71.24 0.70 -1.71 15 2 C 0.10 3.50 6.92 41.39 0.29 3.78 15 3 C -0.33 -10.75 10.74 22.11 0.24 -10.51 15 4 C 0.32 11.30 8.46 133.39 1.13 12.43 15 5 N -0.83 -20.97 9.15 -54.61 -0.50 -21.47 15 6 N -0.41 -17.72 12.59 -54.54 -0.69 -18.41 15 7 N -0.37 -15.83 3.61 -334.73 -1.21 -17.04 15 8 C 0.15 6.56 5.99 86.38 0.52 7.08 15 9 C 0.03 1.38 5.30 29.85 0.16 1.54 15 10 C -0.54 -30.37 9.11 25.60 0.23 -30.14 15 11 H 0.07 3.86 7.74 -2.91 -0.02 3.83 15 12 C 0.00 0.09 5.46 84.65 0.46 0.56 15 13 N -0.93 -57.44 13.29 21.45 0.28 -57.16 15 14 Si 0.97 43.58 29.54 68.60 2.03 45.61 15 15 H -0.26 -10.67 7.11 99.48 0.71 -9.96 15 16 H -0.28 -11.96 7.11 99.48 0.71 -11.25 15 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 18 H 0.10 2.13 8.14 -2.39 -0.02 2.11 15 19 H 0.06 1.89 7.71 -2.39 -0.02 1.87 15 20 H 0.10 2.21 8.14 -2.38 -0.02 2.19 15 21 H 0.17 4.15 8.06 -2.91 -0.02 4.13 15 22 H 0.40 9.33 8.96 -92.71 -0.83 8.50 15 23 H 0.42 7.45 8.96 -92.71 -0.83 6.62 15 24 H 0.08 3.36 8.14 -2.38 -0.02 3.34 15 25 H 0.11 4.00 7.65 -2.38 -0.02 3.98 15 26 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 15 27 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 15 28 H 0.26 15.21 8.31 -92.71 -0.77 14.44 15 Total: -1.00 -72.09 249.46 3.15 -68.94 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -0.49 Total: 16.50 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 3.73 Total: -16.97 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -2.11 Total: -114.07 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -72.09 3.15 -68.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067799588.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.498 kcal (2) G-P(sol) polarization free energy of solvation -72.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds